AT3G48240

Octicosapeptide Phox Bem1p

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006816
Physical Location & Seq
Forward (+)
17867131 .. 17868460
1330 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48240.1

Sequence Viewer

Length: 543 bp
ATGGTGGCCGTAGCTGAGAATCAGAAAACGAAGAACAGTCTCAAGTTCCTCTGCAGTTACGGCGGAAGAATCCTCCCTCGTTCTATCGATGGAAAGCTCCGTTACGTCGGCGGTTTCACCAGAGTACTCTCCGTTCATCACTCTATCTCTTTCACAGAATTGACGATGAAGTTGGAGGAATTTTGTGGATACTCCGTTGAATTGAAGTGTCAATTACCAAATGGAGATCTCGAGACACTAATCTCCGTCAAATCGGACGAAGATCTGGTGAATATCGTTGAAGAATATGATCGTGTTTACGGAGGCAAGATCCGTGCGATTTTGTCGCCTCCTAAGCAGATGTCACCACGATCTAGCGGCGGCGGTGGAGATCTATCGCCGAAATCGCCGTTCTCCGTCGTGGCTTCTCCATCTCCGCCTCGGTATTGTGTGGCTCCGCCGACGGAGAATCTTCTCAGTAGATTCCGTATGAGAACTGGAGAATACTCTCGTTGCTGTAACTGCCGTGTTCCAAACAGAGACTCCAAGCTTATCTGGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1

Protein Analysis

180

Amino Acids

20.05

Weight (kDa)

9.11

Isoelectric Point (pI)

52.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1 PF00564 29 - 109 4.9e-21 PB1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 63, 111, 357, 360, 363, 416, 437
AclWI GGATC 1 cut(s) 304
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 1 cut(s) 179
AfaI GTAC 1 cut(s) 126
AgsI TTSAA 3 cut(s) 200, 205, 281
AluBI AGCT 3 cut(s) 14, 97, 529
AluI AGCT 3 cut(s) 14, 97, 529
Alw26I GTCTC 3 cut(s) 44, 227, 513
AlwI GGATC 1 cut(s) 304
Ama87I CYCGRG 1 cut(s) 230
AoxI GGCC 1 cut(s) 6
ApoI RAATTY 1 cut(s) 179
AsuHPI GGTGA 3 cut(s) 109, 280, 336
AvaI CYCGRG 1 cut(s) 230
BccI CCATC 2 cut(s) 83, 418
BceAI ACGGC 3 cut(s) 76, 373, 489
BciVI GTATCC 1 cut(s) 182
BcoDI GTCTC 3 cut(s) 44, 227, 513
BfaI CTAG 1 cut(s) 354
BfmI CTRYAG 1 cut(s) 52
BfuI GTATCC 1 cut(s) 182
BglII AGATCT 3 cut(s) 226, 262, 370
BisI GCNGC 2 cut(s) 358, 361
BlsI GCNGC 2 cut(s) 359, 362
BmcAI AGTACT 1 cut(s) 126
BmeT110I CYCGRG 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 435
BpmI CTGGAG 1 cut(s) 498
Bpu10I CCTNAGC 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 26
Bsa29I ATCGAT 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 419
BsaXI ACNNNNNCTCC 2 cut(s) 506, 536
Bse1I ACTGG 1 cut(s) 481
BseCI ATCGAT 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 419
BseMII CTCAG 2 cut(s) 6, 469
BseNI ACTGG 1 cut(s) 481
BshFI GGCC 1 cut(s) 8
BshVI ATCGAT 1 cut(s) 87
BsiHKCI CYCGRG 1 cut(s) 230
BsmAI GTCTC 3 cut(s) 44, 227, 513
BsnI GGCC 1 cut(s) 8
BsoBI CYCGRG 1 cut(s) 230
Bsp143I GATC 6 cut(s) 226, 262, 289, 309, 350, 370
BspACI CCGC 7 cut(s) 63, 111, 357, 360, 363, 416, 437
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 2 cut(s) 7, 468
BspDI ATCGAT 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 435
BspMAI CTGCAG 1 cut(s) 56
BspPI GGATC 1 cut(s) 304
BsrI ACTGG 1 cut(s) 481
BssECI CCNNGG 1 cut(s) 419
BssMI GATC 6 cut(s) 226, 262, 289, 309, 350, 370
Bst4CI ACNGT 1 cut(s) 38
BstDEI CTNAG 3 cut(s) 15, 333, 455
BstKTI GATC 6 cut(s) 229, 265, 292, 312, 353, 373
BstMAI GTCTC 3 cut(s) 44, 227, 513
BstMBI GATC 6 cut(s) 226, 262, 289, 309, 350, 370
BstMWI GCNNNNNNNGC 5 cut(s) 60, 334, 385, 501, 535
BstSFI CTRYAG 1 cut(s) 52
BstX2I RGATCY 4 cut(s) 226, 262, 309, 370
BstYI RGATCY 4 cut(s) 226, 262, 309, 370
Bsu15I ATCGAT 1 cut(s) 87
BsuI GTATCC 1 cut(s) 182
BsuRI GGCC 1 cut(s) 8
BsuTUI ATCGAT 1 cut(s) 87
ClaI ATCGAT 1 cut(s) 87
Csp6I GTAC 1 cut(s) 125
CviJI RGCY 6 cut(s) 8, 14, 97, 404, 434, 529
CviKI_1 RGCY 6 cut(s) 8, 14, 97, 404, 434, 529
CviQI GTAC 1 cut(s) 125
DdeI CTNAG 3 cut(s) 15, 333, 455
DpnI GATC 6 cut(s) 228, 264, 291, 311, 352, 372
DpnII GATC 6 cut(s) 226, 262, 289, 309, 350, 370
EaeI YGGCCR 1 cut(s) 6
EciI GGCGGA 3 cut(s) 78, 405, 426
Eco88I CYCGRG 1 cut(s) 230
FaiI YATR 2 cut(s) 288, 470
Fnu4HI GCNGC 2 cut(s) 358, 361
Fsp4HI GCNGC 2 cut(s) 358, 361
FspBI CTAG 1 cut(s) 354
GluI GCNGC 2 cut(s) 358, 361
GsuI CTGGAG 1 cut(s) 498
HaeIII GGCC 1 cut(s) 8
HindIII AAGCTT 1 cut(s) 527
HinfI GANTC 5 cut(s) 19, 69, 448, 462, 521
HphI GGTGA 3 cut(s) 109, 280, 336
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 2 cut(s) 24, 256
Hpy188III TCNNGA 2 cut(s) 230, 232
Hpy8I GTNNAC 1 cut(s) 298
Hpy99I CGWCG 3 cut(s) 110, 401, 445
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 1 cut(s) 54
HpyF10VI GCNNNNNNNGC 5 cut(s) 60, 334, 385, 501, 535
HpyF3I CTNAG 3 cut(s) 15, 333, 455
HpySE526I ACGT 1 cut(s) 105
Kzo9I GATC 6 cut(s) 226, 262, 289, 309, 350, 370
LmnI GCTCC 2 cut(s) 102, 439
LpnPI CCDG 4 cut(s) 133, 251, 462, 520
MaeI CTAG 1 cut(s) 354
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 4 cut(s) 56, 101, 342, 497
MalI GATC 6 cut(s) 228, 264, 291, 311, 352, 372
MboI GATC 6 cut(s) 226, 262, 289, 309, 350, 370
MboII GAAGA 5 cut(s) 43, 78, 272, 293, 443
MflI RGATCY 4 cut(s) 226, 262, 309, 370
MluCI AATT 4 cut(s) 158, 179, 200, 212
MlyI GAGTC 1 cut(s) 515
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 7 cut(s) 59, 83, 87, 169, 296, 339, 429
MwoI GCNNNNNNNGC 5 cut(s) 60, 334, 385, 501, 535
NdeII GATC 6 cut(s) 226, 262, 289, 309, 350, 370
NlaIV GGNNCC 1 cut(s) 435
NmuCI GTSAC 1 cut(s) 342
PaeR7I CTCGAG 1 cut(s) 230
PfeI GAWTC 4 cut(s) 19, 69, 448, 462
PkrI GCNGC 2 cut(s) 359, 362
PleI GAGTC 1 cut(s) 515
PpsI GAGTC 1 cut(s) 515
PspN4I GGNNCC 1 cut(s) 435
PsrI GAACNNNNNNTAC 2 cut(s) 117, 149
PstI CTGCAG 1 cut(s) 56
PsuI RGATCY 4 cut(s) 226, 262, 309, 370
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
SatI GCNGC 2 cut(s) 358, 361
Sau3AI GATC 6 cut(s) 226, 262, 289, 309, 350, 370
ScaI AGTACT 1 cut(s) 126
SchI GAGTC 1 cut(s) 515
SetI ASST 4 cut(s) 16, 99, 108, 531
SfcI CTRYAG 1 cut(s) 52
Sfr274I CTCGAG 1 cut(s) 230
SlaI CTCGAG 1 cut(s) 230
SmlI CTYRAG 2 cut(s) 41, 230
SmoI CTYRAG 2 cut(s) 41, 230
Sse9I AATT 4 cut(s) 158, 179, 200, 212
SsiI CCGC 7 cut(s) 63, 111, 357, 360, 363, 416, 437
SspMI CTAG 1 cut(s) 354
TaaI ACNGT 1 cut(s) 38
TaiI ACGT 1 cut(s) 108
TaqI TCGA 2 cut(s) 87, 231
TasI AATT 4 cut(s) 158, 179, 200, 212
TatI WGTACW 1 cut(s) 124
TauI GCSGC 2 cut(s) 360, 363
TfiI GAWTC 4 cut(s) 19, 69, 448, 462
TseFI GTSAC 1 cut(s) 342
Tsp45I GTSAC 1 cut(s) 342
TspDTI ATGAA 2 cut(s) 125, 182
TspGWI ACGGA 9 cut(s) 89, 121, 184, 235, 302, 315, 385, 455, 458
XapI RAATTY 1 cut(s) 179
XhoI CTCGAG 1 cut(s) 230
XspI CTAG 1 cut(s) 354
ZrmI AGTACT 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.