Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004161.1

Orthogroup ID

OG0006816

Physical Location & Seq

Genomic Coordinates Reverse (-)

26404 .. 27107

Gene Structure 704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004161.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atggtagctggtaaccaaaccaaaactgccaccgaaaccctaaaattcctctgcagctacggcggcaagatcctcctccgccacaccgacggccagctccgctacgtcggcggccacacccgcgtcctctccgtcgatccctccatttccttctcagaattaatggcgaagctcgctgagttctgcggccactccgtcactctcaggtgtcaattgccgggcggcgacttggagacgttgatttcgatcaagtccgacgaggatttggcgaatctaatagaagagtacgatcgtgtttctccttctcgttcctataagatcagagcgattctgtctcccccgaaaccgctgaagcaagtctcgcctgctcagtccacaacatcgaccagcggcgactgttcgccgtcgaaatcgctctactccgacttcgattcgccgccgaagcgttactattccccgacggcggtcgggtttcagagagggccgggaaaagtgtgctactatccttgccatgtgcagcgaactccctgcgagattccgtatcagcatcaccgttatcaccagcacccccatcaatttcacgctcctcactgcaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1

Protein Analysis

199

Amino Acids

22.19

Weight (kDa)

8.75

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48240 AT5G63130 AT5G63130
fragaria_vesca	FvH4_5g06180 FvH4_5g06180
malus_domestica	MD04G1170400.v1.1 MD04G1170600.v1.1 MD06G1166200.v1.1 MD07G1052300.v1.1 MD14G1172100.v1.1
prunus_persica	Prupe.5G166200_v2.0.a1 Prupe.5G166200_v2.0.a1
pyrus_communis	pycom06g14880 pycom14g14360
rosa_chinensis	RchiOBHm_Chr7g0192621
rosa_laevigata	RLG00000004344
rosa_multiflora	Rmu_sc0004161.1_g000005 Rmu_sc0036738.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262830
rosa_rugosa	Rorug07G0003000.1 Rorug07G0003100
rosa_samantha	Rh7AG128200 Rh7BG129800 Rh7CG133100 Rh7DG130800
rosa_wichuraiana	Rw7G010960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	123
AclWI	GGATC	2 cut(s)	64, 131
AcoI	YGGCCR	3 cut(s)	91, 112, 187
AcsI	RAATTY	1 cut(s)	44
AcuI	CTGAAG	1 cut(s)	371
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	463
AluBI	AGCT	4 cut(s)	8, 57, 97, 172
AluI	AGCT	4 cut(s)	8, 57, 97, 172
Alw26I	GTCTC	3 cut(s)	227, 339, 364
AlwI	GGATC	2 cut(s)	64, 131
AoxI	GGCC	4 cut(s)	91, 112, 187, 482
ApeKI	GCWGC	2 cut(s)	54, 517
ApoI	RAATTY	1 cut(s)	44
ArsI	GACNNNNNNTTYG	2 cut(s)	226, 258
AseI	ATTAAT	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	482
AsuC2I	CCSGG	2 cut(s)	219, 486
AsuHPI	GGTGA	2 cut(s)	542, 551
BbvI	GCAGC	2 cut(s)	66, 529
BccI	CCATC	1 cut(s)	579
BceAI	ACGGC	4 cut(s)	76, 106, 388, 477
BcgI	CGANNNNNNTGC	2 cut(s)	510, 544
BcnI	CCSGG	2 cut(s)	219, 486
BcoDI	GTCTC	3 cut(s)	227, 339, 364
BfmI	CTRYAG	1 cut(s)	52
BisI	GCNGC	8 cut(s)	55, 64, 112, 187, 223, 391, 437, 518
BlsI	GCNGC	8 cut(s)	56, 65, 113, 188, 224, 392, 438, 519
Bme1390I	CCNGG	2 cut(s)	219, 486
BmgT120I	GGNCC	1 cut(s)	482
BmrFI	CCNGG	2 cut(s)	219, 486
BmsI	GCATC	1 cut(s)	556
BoxI	GACNNNNGTC	1 cut(s)	464
BpuMI	CCSGG	2 cut(s)	219, 486
BsaBI	GATNNNNATC	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	1 cut(s)	463
Bse8I	GATNNNNATC	1 cut(s)	245
BseJI	GATNNNNATC	1 cut(s)	245
BseLI	CCNNNNNNNGG	1 cut(s)	463
BseMII	CTCAG	4 cut(s)	168, 168, 217, 383
BseRI	GAGGAG	2 cut(s)	65, 576
BseXI	GCAGC	2 cut(s)	66, 529
BsgI	GTGCAG	1 cut(s)	536
Bsh1236I	CGCG	1 cut(s)	123
Bsh1285I	CGRYCG	2 cut(s)	292, 468
BshFI	GGCC	4 cut(s)	93, 114, 189, 484
BsiEI	CGRYCG	2 cut(s)	292, 468
BsiSI	CCGG	2 cut(s)	218, 485
BslI	CCNNNNNNNGG	1 cut(s)	463
BsmAI	GTCTC	3 cut(s)	227, 339, 364
BsmBI	CGTCTC	1 cut(s)	227
BsnI	GGCC	4 cut(s)	93, 114, 189, 484
Bsp143I	GATC	5 cut(s)	69, 136, 246, 289, 318
BspANI	GGCC	4 cut(s)	93, 114, 189, 484
BspCNI	CTCAG	4 cut(s)	167, 169, 216, 382
BspFNI	CGCG	1 cut(s)	123
BspMAI	CTGCAG	1 cut(s)	56
BspPI	GGATC	2 cut(s)	64, 131
BssMI	GATC	5 cut(s)	69, 136, 246, 289, 318
Bst4CI	ACNGT	2 cut(s)	398, 554
Bst6I	CTCTTC	1 cut(s)	276
BstC8I	GCNNGC	3 cut(s)	95, 174, 366
BstDEI	CTNAG	4 cut(s)	154, 177, 203, 369
BstEII	GGTNACC	1 cut(s)	11
BstFNI	CGCG	1 cut(s)	123
BstKTI	GATC	5 cut(s)	72, 139, 249, 292, 321
BstMAI	GTCTC	3 cut(s)	227, 339, 364
BstMBI	GATC	5 cut(s)	69, 136, 246, 289, 318
BstMCI	CGRYCG	2 cut(s)	292, 468
BstMWI	GCNNNNNNNGC	8 cut(s)	60, 63, 99, 108, 120, 173, 361, 442
BstPAI	GACNNNNGTC	1 cut(s)	464
BstPI	GGTNACC	1 cut(s)	11
BstSCI	CCNGG	2 cut(s)	217, 484
BstSFI	CTRYAG	1 cut(s)	52
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	66, 529
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
BsuRI	GGCC	4 cut(s)	93, 114, 189, 484
BtsI	GCAGTG	1 cut(s)	589
BtsIMutI	CAGTG	1 cut(s)	589
Cac8I	GCNNGC	3 cut(s)	95, 174, 366
Cfr13I	GGNCC	1 cut(s)	482
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	1 cut(s)	512
CviJI	RGCY	8 cut(s)	8, 57, 93, 97, 114, 172, 189, 484
CviKI_1	RGCY	8 cut(s)	8, 57, 93, 97, 114, 172, 189, 484
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	4 cut(s)	154, 177, 203, 369
DpnI	GATC	5 cut(s)	71, 138, 248, 291, 320
DpnII	GATC	5 cut(s)	69, 136, 246, 289, 318
EaeI	YGGCCR	3 cut(s)	91, 112, 187
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
EciI	GGCGGA	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	371
Eco91I	GGTNACC	1 cut(s)	11
EcoO65I	GGTNACC	1 cut(s)	11
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	1 cut(s)	515
FaiI	YATR	2 cut(s)	315, 513
FatI	CATG	1 cut(s)	511
FauI	CCCGC	1 cut(s)	128
Fnu4HI	GCNGC	8 cut(s)	55, 64, 112, 187, 223, 391, 437, 518
Fsp4HI	GCNGC	8 cut(s)	55, 64, 112, 187, 223, 391, 437, 518
GluI	GCNGC	8 cut(s)	55, 64, 112, 187, 223, 391, 437, 518
HaeIII	GGCC	4 cut(s)	93, 114, 189, 484
HapII	CCGG	2 cut(s)	218, 485
HgaI	GACGC	1 cut(s)	112
Hin1II	CATG	1 cut(s)	515
HinfI	GANTC	4 cut(s)	271, 328, 431, 535
HpaII	CCGG	2 cut(s)	218, 485
HphI	GGTGA	2 cut(s)	542, 551
Hpy166II	GTNNAC	1 cut(s)	375
Hpy188I	TCNGA	5 cut(s)	157, 256, 323, 424, 477
Hpy8I	GTNNAC	1 cut(s)	375
Hpy99I	CGWCG	6 cut(s)	92, 110, 137, 260, 409, 463
HpyAV	CCTTC	2 cut(s)	160, 312
HpyCH4III	ACNGT	2 cut(s)	398, 554
HpyCH4IV	ACGT	2 cut(s)	105, 236
HpyCH4V	TGCA	3 cut(s)	54, 517, 594
HpyF10VI	GCNNNNNNNGC	8 cut(s)	60, 63, 99, 108, 120, 173, 361, 442
HpyF3I	CTNAG	4 cut(s)	154, 177, 203, 369
HpySE526I	ACGT	2 cut(s)	105, 236
Hsp92II	CATG	1 cut(s)	515
Kzo9I	GATC	5 cut(s)	69, 136, 246, 289, 318
LmnI	GCTCC	2 cut(s)	102, 589
LpnPI	CCDG	8 cut(s)	107, 190, 231, 378, 400, 498, 541, 575
Lsp1109I	GCAGC	2 cut(s)	66, 529
LweI	GCATC	1 cut(s)	556
MaeII	ACGT	2 cut(s)	105, 236
MaeIII	GTNAC	3 cut(s)	11, 196, 446
MalI	GATC	5 cut(s)	71, 138, 248, 291, 320
MboI	GATC	5 cut(s)	69, 136, 246, 289, 318
MboII	GAAGA	1 cut(s)	293
MfeI	CAATTG	2 cut(s)	212, 595
MflI	RGATCY	1 cut(s)	69
MluCI	AATT	5 cut(s)	44, 158, 212, 575, 595
MmeI	TCCRAC	2 cut(s)	279, 447
MnlI	CCTC	8 cut(s)	59, 83, 86, 137, 151, 253, 473, 597
MseI	TTAA	1 cut(s)	161
MspA1I	CMGCKG	2 cut(s)	349, 390
MspI	CCGG	2 cut(s)	218, 485
MspR9I	CCNGG	2 cut(s)	219, 486
MunI	CAATTG	2 cut(s)	212, 595
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	8 cut(s)	60, 63, 99, 108, 120, 173, 361, 442
NciI	CCSGG	2 cut(s)	219, 486
NdeII	GATC	5 cut(s)	69, 136, 246, 289, 318
NlaIII	CATG	1 cut(s)	515
NmuCI	GTSAC	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	242
PfeI	GAWTC	4 cut(s)	271, 328, 431, 535
PkrI	GCNGC	8 cut(s)	56, 65, 113, 188, 224, 392, 438, 519
Ple19I	CGATCG	1 cut(s)	292
PshAI	GACNNNNGTC	1 cut(s)	464
PshBI	ATTAAT	1 cut(s)	161
PspEI	GGTNACC	1 cut(s)	11
PspPI	GGNCC	1 cut(s)	482
PstI	CTGCAG	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	69
PvuI	CGATCG	1 cut(s)	292
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	8 cut(s)	55, 64, 112, 187, 223, 391, 437, 518
Sau3AI	GATC	5 cut(s)	69, 136, 246, 289, 318
Sau96I	GGNCC	1 cut(s)	482
ScrFI	CCNGG	2 cut(s)	219, 486
SetI	ASST	7 cut(s)	10, 59, 99, 108, 174, 209, 239
SfaNI	GCATC	1 cut(s)	556
SfcI	CTRYAG	1 cut(s)	52
Sse9I	AATT	5 cut(s)	44, 158, 212, 575, 595
StyD4I	CCNGG	2 cut(s)	217, 484
TaaI	ACNGT	2 cut(s)	398, 554
TaiI	ACGT	2 cut(s)	108, 239
TaqI	TCGA	5 cut(s)	135, 245, 383, 407, 429
TasI	AATT	5 cut(s)	44, 158, 212, 575, 595
TauI	GCSGC	6 cut(s)	66, 114, 189, 225, 393, 439
TfiI	GAWTC	4 cut(s)	271, 328, 431, 535
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	1 cut(s)	596
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	2 cut(s)	54, 517
Tsp45I	GTSAC	1 cut(s)	196
TspGWI	ACGGA	3 cut(s)	121, 184, 528
TspRI	CASTG	1 cut(s)	596
VspI	ATTAAT	1 cut(s)	161
XapI	RAATTY	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.