Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0006816

Physical Location & Seq

Genomic Coordinates Reverse (-)

10209178 .. 10209881

Gene Structure 704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G010960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGTAGCTGGCAACCAAACCAAAACCGCCACCGAAACCCTAAAATTCCTCTGCAGCTACGGCGGCAAGATCCTCCTCCGCCACACCGACGGCCAGCTCCGCTACGTCGGCGGCCACACCCGCGTCCTCTCCGTCGATCCCTCCATTTCCTTCTCAGTTCTGCGGCCACTCCGTCACTCTCAGGTGTCAATTGCCGGGCGGCGACTTGGAGACGTTGATTTCGATCAATCCGACGAGGATTTGGCGAATCTAATAGAAGAGTACGATCGTGTTTCTCCTTCTCGTTCCTATAAGATCAGAGCGATTCTATCTCCCCCGAAACCGCTGAAACAAGTCTCGCCTGCTCAGTCCACAACATCGACCAGCGGCGACTGTTCGCCGTCGAAATCGGTCTACTCCGACTTCGATTCGCCGCCGAAGCGTTACTATTCCCCGACGGCGGTCGGGTTTCAGAGAGGGCCGGGCAAAGTGTGCTACTATCCTTGCCATGTCCAGCGAACTCCCTGCGAGATTCCGTATCAGCATCACCGTTATCACCAGCACCCCCATCAATTTCACGCTCCTCACTGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1

Protein Analysis

191

Amino Acids

21.44

Weight (kDa)

9.15

Isoelectric Point (pI)

57.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48240 AT5G63130 AT5G63130
fragaria_vesca	FvH4_5g06180 FvH4_5g06180
malus_domestica	MD04G1170400.v1.1 MD04G1170600.v1.1 MD06G1166200.v1.1 MD07G1052300.v1.1 MD14G1172100.v1.1
prunus_persica	Prupe.5G166200_v2.0.a1 Prupe.5G166200_v2.0.a1
pyrus_communis	pycom06g14880 pycom14g14360
rosa_chinensis	RchiOBHm_Chr7g0192621
rosa_laevigata	RLG00000004344
rosa_multiflora	Rmu_sc0004161.1_g000005 Rmu_sc0036738.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262830
rosa_rugosa	Rorug07G0003000.1 Rorug07G0003100
rosa_samantha	Rh7AG128200 Rh7BG129800 Rh7CG133100 Rh7DG130800
rosa_wichuraiana	Rw7G010960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	393
AccII	CGCG	1 cut(s)	123
AclWI	GGATC	2 cut(s)	64, 131
AcoI	YGGCCR	3 cut(s)	91, 112, 164
AcsI	RAATTY	1 cut(s)	44
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	439
AluBI	AGCT	3 cut(s)	8, 57, 97
AluI	AGCT	3 cut(s)	8, 57, 97
Alw26I	GTCTC	2 cut(s)	204, 340
AlwI	GGATC	2 cut(s)	64, 131
AoxI	GGCC	4 cut(s)	91, 112, 164, 458
ApeKI	GCWGC	1 cut(s)	54
ApoI	RAATTY	1 cut(s)	44
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AspS9I	GGNCC	1 cut(s)	458
AsuC2I	CCSGG	2 cut(s)	196, 462
AsuHPI	GGTGA	2 cut(s)	518, 527
BbvI	GCAGC	1 cut(s)	66
BccI	CCATC	1 cut(s)	555
BceAI	ACGGC	4 cut(s)	76, 106, 364, 453
BcgI	CGANNNNNNTGC	2 cut(s)	486, 520
BcnI	CCSGG	2 cut(s)	196, 462
BcoDI	GTCTC	2 cut(s)	204, 340
BfmI	CTRYAG	1 cut(s)	52
BisI	GCNGC	7 cut(s)	55, 64, 112, 164, 200, 367, 413
BlsI	GCNGC	7 cut(s)	56, 65, 113, 165, 201, 368, 414
Bme1390I	CCNGG	2 cut(s)	196, 462
BmgT120I	GGNCC	1 cut(s)	458
BmrFI	CCNGG	2 cut(s)	196, 462
BmsI	GCATC	1 cut(s)	532
BoxI	GACNNNNGTC	1 cut(s)	440
BpuMI	CCSGG	2 cut(s)	196, 462
BsaBI	GATNNNNATC	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse8I	GATNNNNATC	1 cut(s)	222
BseJI	GATNNNNATC	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMII	CTCAG	3 cut(s)	168, 194, 359
BseRI	GAGGAG	2 cut(s)	65, 552
BseXI	GCAGC	1 cut(s)	66
Bsh1236I	CGCG	1 cut(s)	123
Bsh1285I	CGRYCG	2 cut(s)	268, 444
BshFI	GGCC	4 cut(s)	93, 114, 166, 460
BsiEI	CGRYCG	2 cut(s)	268, 444
BsiSI	CCGG	2 cut(s)	195, 461
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	2 cut(s)	204, 340
BsmBI	CGTCTC	1 cut(s)	204
BsnI	GGCC	4 cut(s)	93, 114, 166, 460
Bsp143I	GATC	5 cut(s)	69, 136, 223, 265, 294
BspANI	GGCC	4 cut(s)	93, 114, 166, 460
BspCNI	CTCAG	3 cut(s)	167, 193, 358
BspFNI	CGCG	1 cut(s)	123
BspMAI	CTGCAG	1 cut(s)	56
BspPI	GGATC	2 cut(s)	64, 131
BssMI	GATC	5 cut(s)	69, 136, 223, 265, 294
Bst4CI	ACNGT	2 cut(s)	374, 530
Bst6I	CTCTTC	1 cut(s)	252
BstAPI	GCANNNNNTGC	1 cut(s)	471
BstC8I	GCNNGC	3 cut(s)	10, 95, 342
BstDEI	CTNAG	3 cut(s)	154, 180, 345
BstFNI	CGCG	1 cut(s)	123
BstKTI	GATC	5 cut(s)	72, 139, 226, 268, 297
BstMAI	GTCTC	2 cut(s)	204, 340
BstMBI	GATC	5 cut(s)	69, 136, 223, 265, 294
BstMCI	CGRYCG	2 cut(s)	268, 444
BstMWI	GCNNNNNNNGC	7 cut(s)	60, 63, 99, 108, 120, 418, 471
BstPAI	GACNNNNGTC	1 cut(s)	440
BstSCI	CCNGG	2 cut(s)	194, 460
BstSFI	CTRYAG	1 cut(s)	52
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	66
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
BsuRI	GGCC	4 cut(s)	93, 114, 166, 460
BtsI	GCAGTG	1 cut(s)	565
BtsIMutI	CAGTG	1 cut(s)	565
Cac8I	GCNNGC	3 cut(s)	10, 95, 342
Cfr13I	GGNCC	1 cut(s)	458
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	1 cut(s)	488
CviJI	RGCY	7 cut(s)	8, 57, 93, 97, 114, 166, 460
CviKI_1	RGCY	7 cut(s)	8, 57, 93, 97, 114, 166, 460
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	3 cut(s)	154, 180, 345
DpnI	GATC	5 cut(s)	71, 138, 225, 267, 296
DpnII	GATC	5 cut(s)	69, 136, 223, 265, 294
EaeI	YGGCCR	3 cut(s)	91, 112, 164
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
EciI	GGCGGA	1 cut(s)	68
Esp3I	CGTCTC	1 cut(s)	204
FaeI	CATG	1 cut(s)	491
FaiI	YATR	2 cut(s)	291, 489
FatI	CATG	1 cut(s)	487
FauI	CCCGC	1 cut(s)	128
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	7 cut(s)	55, 64, 112, 164, 200, 367, 413
Fsp4HI	GCNGC	7 cut(s)	55, 64, 112, 164, 200, 367, 413
GluI	GCNGC	7 cut(s)	55, 64, 112, 164, 200, 367, 413
HaeIII	GGCC	4 cut(s)	93, 114, 166, 460
HapII	CCGG	2 cut(s)	195, 461
HgaI	GACGC	1 cut(s)	112
Hin1II	CATG	1 cut(s)	491
HinfI	GANTC	4 cut(s)	247, 304, 407, 511
HpaII	CCGG	2 cut(s)	195, 461
HphI	GGTGA	2 cut(s)	518, 527
Hpy166II	GTNNAC	2 cut(s)	351, 394
Hpy188I	TCNGA	4 cut(s)	232, 299, 400, 453
Hpy8I	GTNNAC	2 cut(s)	351, 394
Hpy99I	CGWCG	6 cut(s)	92, 110, 137, 236, 385, 439
HpyAV	CCTTC	2 cut(s)	160, 288
HpyCH4III	ACNGT	2 cut(s)	374, 530
HpyCH4IV	ACGT	2 cut(s)	105, 213
HpyCH4V	TGCA	2 cut(s)	54, 570
HpyF10VI	GCNNNNNNNGC	7 cut(s)	60, 63, 99, 108, 120, 418, 471
HpyF3I	CTNAG	3 cut(s)	154, 180, 345
HpySE526I	ACGT	2 cut(s)	105, 213
Hsp92II	CATG	1 cut(s)	491
Kzo9I	GATC	5 cut(s)	69, 136, 223, 265, 294
LmnI	GCTCC	2 cut(s)	102, 565
LpnPI	CCDG	9 cut(s)	107, 167, 208, 354, 376, 474, 506, 517, 551
Lsp1109I	GCAGC	1 cut(s)	66
LweI	GCATC	1 cut(s)	532
MaeII	ACGT	2 cut(s)	105, 213
MaeIII	GTNAC	2 cut(s)	173, 422
MalI	GATC	5 cut(s)	71, 138, 225, 267, 296
MboI	GATC	5 cut(s)	69, 136, 223, 265, 294
MboII	GAAGA	1 cut(s)	269
MfeI	CAATTG	2 cut(s)	189, 571
MflI	RGATCY	1 cut(s)	69
MluCI	AATT	4 cut(s)	44, 189, 551, 571
MmeI	TCCRAC	2 cut(s)	255, 423
MnlI	CCTC	8 cut(s)	59, 83, 86, 137, 151, 229, 449, 573
MspA1I	CMGCKG	2 cut(s)	325, 366
MspI	CCGG	2 cut(s)	195, 461
MspR9I	CCNGG	2 cut(s)	196, 462
MunI	CAATTG	2 cut(s)	189, 571
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	7 cut(s)	60, 63, 99, 108, 120, 418, 471
NciI	CCSGG	2 cut(s)	196, 462
NdeII	GATC	5 cut(s)	69, 136, 223, 265, 294
NlaIII	CATG	1 cut(s)	491
NmuCI	GTSAC	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	2 cut(s)	219, 228
PfeI	GAWTC	4 cut(s)	247, 304, 407, 511
PkrI	GCNGC	7 cut(s)	56, 65, 113, 165, 201, 368, 414
Ple19I	CGATCG	1 cut(s)	268
PshAI	GACNNNNGTC	1 cut(s)	440
PspPI	GGNCC	1 cut(s)	458
PstI	CTGCAG	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	69
PvuI	CGATCG	1 cut(s)	268
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SatI	GCNGC	7 cut(s)	55, 64, 112, 164, 200, 367, 413
Sau3AI	GATC	5 cut(s)	69, 136, 223, 265, 294
Sau96I	GGNCC	1 cut(s)	458
ScrFI	CCNGG	2 cut(s)	196, 462
SetI	ASST	6 cut(s)	10, 59, 99, 108, 186, 216
SfaNI	GCATC	1 cut(s)	532
SfcI	CTRYAG	1 cut(s)	52
Sse9I	AATT	4 cut(s)	44, 189, 551, 571
StyD4I	CCNGG	2 cut(s)	194, 460
TaaI	ACNGT	2 cut(s)	374, 530
TaiI	ACGT	2 cut(s)	108, 216
TaqI	TCGA	5 cut(s)	135, 222, 359, 383, 405
TaqII	GACCGA	1 cut(s)	379
TasI	AATT	4 cut(s)	44, 189, 551, 571
TauI	GCSGC	6 cut(s)	66, 114, 166, 202, 369, 415
TfiI	GAWTC	4 cut(s)	247, 304, 407, 511
TscAI	CASTG	1 cut(s)	572
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	1 cut(s)	54
Tsp45I	GTSAC	1 cut(s)	173
TspGWI	ACGGA	3 cut(s)	121, 161, 504
TspRI	CASTG	1 cut(s)	572
XapI	RAATTY	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.