AT5G63130

Octicosapeptide Phox Bem1p

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006816
Physical Location & Seq
Forward (+)
25322975 .. 25324739
1765 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G63130.2

Sequence Viewer

Length: 579 bp
ATGGTAGCCGTTGATTATACCGAGAAGAACAGTGGAAGCAGTCTCAAGTTTCTATGCAGTTACGGTGGCAGAATCCTCCCTCGCTCCACCGACGGCAAGCTCCGTTACGTCGGAGGTCACACCAGAGTCCTCTCCGTTGATCGTTCTATCTCTTTCTCAGAGCTGATGAAGAAACTCTATGAATTCTGTGGATACTCCGTTGATTTACGATGTCAATTACCAAACGGAGATCTCGAGACTCTAATCTCCGTCAAATCAGAAGAAGAACTAGCGGAGATCGTTGAAGAGTACGATCGCATCTGCGGAGCCAAGATCCGTGCCGTTCTATCACCTCCGAGATCTTCGCATAAGACCGAATCTTCGCCGTCTTCAAGCGGTGATCGATCTCCAAAATCGCCGTTCTCCGTCACGCCTTCACCGCCAAATTCTCCGTCGCCGGCGTATGGAAGATATCTACAATCTCGGTATTGTTTACCTTCCACGGATCTTCCTCCGAGAAGATACATTCAGAGAGCGGAAGAATCGCATTGCTGCTATGCGTGTCGTGTACACAAAGACTCTAGGCTCGTTTGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PB1

Protein Analysis

192

Amino Acids

21.55

Weight (kDa)

8.75

Isoelectric Point (pI)

76.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PB1 PF00564 30 - 110 1.2e-20 PB1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 515
AciI CCGC 5 cut(s) 272, 303, 375, 419, 515
AclWI GGATC 2 cut(s) 307, 492
AcsI RAATTY 2 cut(s) 182, 424
AfaI GTAC 2 cut(s) 290, 549
AfiI CCNNNNNNNGG 1 cut(s) 443
AgsI TTSAA 2 cut(s) 284, 372
AluBI AGCT 2 cut(s) 100, 163
AluI AGCT 2 cut(s) 100, 163
Alw26I GTCTC 2 cut(s) 47, 230
AlwI GGATC 2 cut(s) 307, 492
Ama87I CYCGRG 1 cut(s) 233
ApeKI GCWGC 1 cut(s) 531
ApoI RAATTY 2 cut(s) 182, 424
ArsI GACNNNNNNTTYG 4 cut(s) 343, 375, 416, 448
AsuHPI GGTGA 3 cut(s) 321, 389, 408
AvaI CYCGRG 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 360
BbvI GCAGC 1 cut(s) 518
BceAI ACGGC 4 cut(s) 109, 305, 349, 382
BciVI GTATCC 1 cut(s) 185
BcoDI GTCTC 2 cut(s) 47, 230
BfaI CTAG 2 cut(s) 269, 561
BfuI GTATCC 1 cut(s) 185
BglII AGATCT 2 cut(s) 229, 338
BisI GCNGC 1 cut(s) 532
BlsI GCNGC 1 cut(s) 533
BmeT110I CYCGRG 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 307
BmsI GCATC 1 cut(s) 306
BpiI GAAGAC 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 29
Bsa29I ATCGAT 1 cut(s) 382
BsaJI CCNNGG 1 cut(s) 480
Bsc4I CCNNNNNNNGG 1 cut(s) 443
Bse118I RCCGGY 1 cut(s) 436
Bse3DI GCAATG 1 cut(s) 526
BseCI ATCGAT 1 cut(s) 382
BseDI CCNNGG 1 cut(s) 480
BseLI CCNNNNNNNGG 1 cut(s) 443
BseMI GCAATG 1 cut(s) 526
BseMII CTCAG 1 cut(s) 171
BseXI GCAGC 1 cut(s) 518
Bsh1285I CGRYCG 1 cut(s) 295
BshVI ATCGAT 1 cut(s) 382
BsiEI CGRYCG 1 cut(s) 295
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 1 cut(s) 437
BslI CCNNNNNNNGG 1 cut(s) 443
BsmAI GTCTC 2 cut(s) 47, 230
BsoBI CYCGRG 1 cut(s) 233
Bsp1407I TGTACA 1 cut(s) 547
Bsp143I GATC 9 cut(s) 139, 229, 276, 292, 312, 338, 379, 383, 484
BspACI CCGC 5 cut(s) 272, 303, 375, 419, 515
BspCNI CTCAG 1 cut(s) 170
BspDI ATCGAT 1 cut(s) 382
BspLI GGNNCC 1 cut(s) 307
BspPI GGATC 2 cut(s) 307, 492
BsrBI CCGCTC 1 cut(s) 515
BsrDI GCAATG 1 cut(s) 526
BsrFI RCCGGY 1 cut(s) 436
BsrGI TGTACA 1 cut(s) 547
BssAI RCCGGY 1 cut(s) 436
BssECI CCNNGG 1 cut(s) 480
BssMI GATC 9 cut(s) 139, 229, 276, 292, 312, 338, 379, 383, 484
Bst4CI ACNGT 2 cut(s) 32, 65
Bst6I CTCTTC 1 cut(s) 279
BstAUI TGTACA 1 cut(s) 547
BstC8I GCNNGC 2 cut(s) 98, 438
BstDEI CTNAG 1 cut(s) 157
BstDSI CCRYGG 1 cut(s) 480
BstKTI GATC 9 cut(s) 142, 232, 279, 295, 315, 341, 382, 386, 487
BstMAI GTCTC 2 cut(s) 47, 230
BstMBI GATC 9 cut(s) 139, 229, 276, 292, 312, 338, 379, 383, 484
BstMCI CGRYCG 1 cut(s) 295
BstMWI GCNNNNNNNGC 2 cut(s) 418, 571
BstV1I GCAGC 1 cut(s) 518
BstV2I GAAGAC 1 cut(s) 360
BstX2I RGATCY 4 cut(s) 229, 312, 338, 484
BstYI RGATCY 4 cut(s) 229, 312, 338, 484
Bsu15I ATCGAT 1 cut(s) 382
BsuI GTATCC 1 cut(s) 185
BsuTUI ATCGAT 1 cut(s) 382
BtgI CCRYGG 1 cut(s) 480
BtsIMutI CAGTG 1 cut(s) 37
Cac8I GCNNGC 2 cut(s) 98, 438
Cfr10I RCCGGY 1 cut(s) 436
ClaI ATCGAT 1 cut(s) 382
Csp6I GTAC 2 cut(s) 289, 548
CviJI RGCY 5 cut(s) 8, 100, 163, 308, 565
CviKI_1 RGCY 5 cut(s) 8, 100, 163, 308, 565
CviQI GTAC 2 cut(s) 289, 548
DdeI CTNAG 1 cut(s) 157
DpnI GATC 9 cut(s) 141, 231, 278, 294, 314, 340, 381, 385, 486
DpnII GATC 9 cut(s) 139, 229, 276, 292, 312, 338, 379, 383, 484
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco32I GATATC 1 cut(s) 452
Eco88I CYCGRG 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 182
EcoRV GATATC 1 cut(s) 452
FaiI YATR 6 cut(s) 18, 55, 180, 348, 444, 537
Fnu4HI GCNGC 1 cut(s) 532
Fsp4HI GCNGC 1 cut(s) 532
FspBI CTAG 2 cut(s) 269, 561
GluI GCNGC 1 cut(s) 532
HapII CCGG 1 cut(s) 437
HinfI GANTC 6 cut(s) 72, 126, 238, 356, 521, 557
HpaII CCGG 1 cut(s) 437
HphI GGTGA 3 cut(s) 321, 389, 408
Hpy166II GTNNAC 3 cut(s) 473, 548, 550
Hpy188I TCNGA 6 cut(s) 113, 160, 259, 336, 495, 510
Hpy188III TCNNGA 2 cut(s) 233, 235
Hpy8I GTNNAC 3 cut(s) 473, 548, 550
Hpy99I CGWCG 3 cut(s) 95, 113, 436
HpyAV CCTTC 2 cut(s) 423, 486
HpyCH4III ACNGT 2 cut(s) 32, 65
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 1 cut(s) 57
HpyF10VI GCNNNNNNNGC 2 cut(s) 418, 571
HpyF3I CTNAG 1 cut(s) 157
HpySE526I ACGT 1 cut(s) 108
KroI GCCGGC 1 cut(s) 436
KroNI GCCGGC 1 cut(s) 438
Kzo9I GATC 9 cut(s) 139, 229, 276, 292, 312, 338, 379, 383, 484
LmnI GCTCC 3 cut(s) 89, 105, 305
LpnPI CCDG 2 cut(s) 136, 450
Lsp1109I GCAGC 1 cut(s) 518
LweI GCATC 1 cut(s) 306
MaeI CTAG 2 cut(s) 269, 561
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 4 cut(s) 59, 104, 116, 406
MalI GATC 9 cut(s) 141, 231, 278, 294, 314, 340, 381, 385, 486
MbiI CCGCTC 1 cut(s) 515
MboI GATC 9 cut(s) 139, 229, 276, 292, 312, 338, 379, 383, 484
MflI RGATCY 4 cut(s) 229, 312, 338, 484
MluCI AATT 3 cut(s) 182, 215, 424
MlyI GAGTC 3 cut(s) 135, 232, 551
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 6 cut(s) 86, 90, 107, 140, 342, 501
MreI CGCCGGCG 1 cut(s) 436
MroNI GCCGGC 1 cut(s) 436
MspI CCGG 1 cut(s) 437
MwoI GCNNNNNNNGC 2 cut(s) 418, 571
NaeI GCCGGC 1 cut(s) 438
NdeII GATC 9 cut(s) 139, 229, 276, 292, 312, 338, 379, 383, 484
NgoMIV GCCGGC 1 cut(s) 436
NlaIV GGNNCC 1 cut(s) 307
NmuCI GTSAC 2 cut(s) 116, 406
PaeR7I CTCGAG 1 cut(s) 233
PcsI WCGNNNNNNNCGW 1 cut(s) 231
PdiI GCCGGC 1 cut(s) 438
PfeI GAWTC 3 cut(s) 72, 356, 521
PkrI GCNGC 1 cut(s) 533
Ple19I CGATCG 1 cut(s) 295
PleI GAGTC 3 cut(s) 134, 232, 551
PpsI GAGTC 3 cut(s) 134, 232, 551
PspN4I GGNNCC 1 cut(s) 307
PsuI RGATCY 4 cut(s) 229, 312, 338, 484
PvuI CGATCG 1 cut(s) 295
RsaI GTAC 2 cut(s) 290, 549
RsaNI GTAC 2 cut(s) 289, 548
SatI GCNGC 1 cut(s) 532
Sau3AI GATC 9 cut(s) 139, 229, 276, 292, 312, 338, 379, 383, 484
SchI GAGTC 3 cut(s) 135, 232, 551
SetI ASST 6 cut(s) 102, 111, 118, 165, 334, 478
SfaNI GCATC 1 cut(s) 306
Sfr274I CTCGAG 1 cut(s) 233
SgrAI CRCCGGYG 1 cut(s) 436
SlaI CTCGAG 1 cut(s) 233
SmlI CTYRAG 2 cut(s) 44, 233
SmoI CTYRAG 2 cut(s) 44, 233
Sse9I AATT 3 cut(s) 182, 215, 424
SsiI CCGC 5 cut(s) 272, 303, 375, 419, 515
SspMI CTAG 2 cut(s) 269, 561
TaaI ACNGT 2 cut(s) 32, 65
TaiI ACGT 1 cut(s) 111
TaqI TCGA 2 cut(s) 234, 382
TaqII GACCGA 1 cut(s) 368
TasI AATT 3 cut(s) 182, 215, 424
TatI WGTACW 1 cut(s) 547
TfiI GAWTC 3 cut(s) 72, 356, 521
TscAI CASTG 1 cut(s) 37
TseFI GTSAC 2 cut(s) 116, 406
TseI GCWGC 1 cut(s) 531
Tsp45I GTSAC 2 cut(s) 116, 406
TspDTI ATGAA 2 cut(s) 182, 195
TspGWI ACGGA 9 cut(s) 92, 124, 187, 238, 240, 305, 394, 420, 497
TspRI CASTG 1 cut(s) 37
XapI RAATTY 2 cut(s) 182, 424
XhoI CTCGAG 1 cut(s) 233
XspI CTAG 2 cut(s) 269, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.