Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006816

Physical Location & Seq

Genomic Coordinates Reverse (-)

14396533 .. 14398095

Gene Structure 1563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G166200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGACCAACACAAAACCAAAGAAACTTTAAAACTCCTCTGTAGCTATGGCGGGAAAATCCTCCCACGTCACACCGACGGTAATCTCCGTTACGTCGGTGGCCTCACTCGTGTTCTCGCCGTGGATGCCTCCATTTCCTTTGCAGAGCTAATGGTGAAGCTCGCGGAATTCTGTGGCTACTCTGTGGATTTGAGGTGTCAATTGCCGGATGGAGATTTGGAGACCTTGATTTCGGTCAAGTCCGACGAGGAGTTAGCTAATATCATCGAAGAGTACGATCGAGCTTCTTCTTCGTCTCGTCCTCTAAAGATCAGAGCCATTCTCTCGCCGCCGAAATCGCTGAAGCAAATCTCGCCTCCTATGTCTATGGCTACGAGTGGCGGCGATTTGTCCCCTTCGAAATCGCTCTTATCGTTCACCGATTCGCCTCCCAAACGGTATGTTTCGCCTCTGAAGGGGTATGTTTCGCCTCCGAAACGGTACGCTTCGCCGCCGATTGTACATCCCGGGCCAGTCAGGTTTCACAAAGGGTCCGGACGTGTTTGCTACTATCCTTGCCATGTCCAGAGCAACCCCAGCGACATGTCGTATCTTCCTCATCATCATCATCACCATCAACATCGTCATCAACACGTTCCTCACTGCAATGACTGGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1

Protein Analysis

220

Amino Acids

24.5

Weight (kDa)

9.1

Isoelectric Point (pI)

59.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48240 AT5G63130 AT5G63130
fragaria_vesca	FvH4_5g06180 FvH4_5g06180
malus_domestica	MD04G1170400.v1.1 MD04G1170600.v1.1 MD06G1166200.v1.1 MD07G1052300.v1.1 MD14G1172100.v1.1
prunus_persica	Prupe.5G166200_v2.0.a1 Prupe.5G166200_v2.0.a1
pyrus_communis	pycom06g14880 pycom14g14360
rosa_chinensis	RchiOBHm_Chr7g0192621
rosa_laevigata	RLG00000004344
rosa_multiflora	Rmu_sc0004161.1_g000005 Rmu_sc0036738.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262830
rosa_rugosa	Rorug07G0003000.1 Rorug07G0003100
rosa_samantha	Rh7AG128200 Rh7BG129800 Rh7CG133100 Rh7DG130800
rosa_wichuraiana	Rw7G010960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	164
AccIII	TCCGGA	1 cut(s)	533
AciI	CCGC	5 cut(s)	51, 164, 329, 381, 491
AcsI	RAATTY	1 cut(s)	167
AcuI	CTGAAG	2 cut(s)	362, 473
AfaI	GTAC	3 cut(s)	275, 482, 501
AfiI	CCNNNNNNNGG	1 cut(s)	455
AflIII	ACRYGT	3 cut(s)	538, 582, 631
AjiI	CACGTC	2 cut(s)	68, 539
AluBI	AGCT	5 cut(s)	45, 148, 160, 257, 284
AluI	AGCT	5 cut(s)	45, 148, 160, 257, 284
Alw26I	GTCTC	2 cut(s)	215, 300
Ama87I	CYCGRG	1 cut(s)	506
Aor13HI	TCCGGA	1 cut(s)	533
AoxI	GGCC	2 cut(s)	100, 509
ApoI	RAATTY	1 cut(s)	167
ArsI	GACNNNNNNTTYG	2 cut(s)	214, 246
AspS9I	GGNCC	3 cut(s)	4, 509, 531
AsuC2I	CCSGG	2 cut(s)	507, 508
AsuHPI	GGTGA	3 cut(s)	166, 409, 602
AsuII	TTCGAA	1 cut(s)	398
AvaI	CYCGRG	1 cut(s)	506
AvaII	GGWCC	2 cut(s)	4, 531
BauI	CACGAG	1 cut(s)	108
BccI	CCATC	2 cut(s)	203, 621
BceAI	ACGGC	1 cut(s)	104
BcnI	CCSGG	2 cut(s)	507, 508
BcoDI	GTCTC	2 cut(s)	215, 300
BfmI	CTRYAG	1 cut(s)	40
BisI	GCNGC	3 cut(s)	329, 382, 491
BlsI	GCNGC	3 cut(s)	330, 383, 492
Bme1390I	CCNGG	2 cut(s)	507, 508
Bme18I	GGWCC	2 cut(s)	4, 531
BmeT110I	CYCGRG	1 cut(s)	506
BmgBI	CACGTC	2 cut(s)	68, 539
BmgT120I	GGNCC	3 cut(s)	4, 509, 531
BmiI	GGNNCC	1 cut(s)	532
BmrFI	CCNGG	2 cut(s)	507, 508
BmsI	GCATC	1 cut(s)	115
BplI	GAGNNNNNCTC	2 cut(s)	306, 338
Bpu14I	TTCGAA	1 cut(s)	398
BpuMI	CCSGG	2 cut(s)	507, 508
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	120, 506
BsaWI	WCCGGW	1 cut(s)	533
Bsc4I	CCNNNNNNNGG	1 cut(s)	455
Bse1I	ACTGG	2 cut(s)	512, 656
Bse3DI	GCAATG	1 cut(s)	652
BseAI	TCCGGA	1 cut(s)	533
BseDI	CCNNGG	2 cut(s)	120, 506
BseGI	GGATG	3 cut(s)	130, 214, 502
BseLI	CCNNNNNNNGG	1 cut(s)	455
BseMI	GCAATG	1 cut(s)	652
BseNI	ACTGG	2 cut(s)	512, 656
BseRI	GAGGAG	2 cut(s)	26, 263
BseYI	CCCAGC	1 cut(s)	575
Bsh1236I	CGCG	1 cut(s)	164
Bsh1285I	CGRYCG	1 cut(s)	280
BshFI	GGCC	2 cut(s)	102, 511
BsiEI	CGRYCG	1 cut(s)	280
BsiHKCI	CYCGRG	1 cut(s)	506
BsiSI	CCGG	3 cut(s)	206, 507, 534
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	1 cut(s)	455
BsmAI	GTCTC	2 cut(s)	215, 300
BsmBI	CGTCTC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	376
BsnI	GGCC	2 cut(s)	102, 511
Bso31I	GGTCTC	1 cut(s)	215
BsoBI	CYCGRG	1 cut(s)	506
Bsp119I	TTCGAA	1 cut(s)	398
Bsp13I	TCCGGA	1 cut(s)	533
Bsp1407I	TGTACA	1 cut(s)	499
Bsp143I	GATC	2 cut(s)	277, 309
BspACI	CCGC	5 cut(s)	51, 164, 329, 381, 491
BspANI	GGCC	2 cut(s)	102, 511
BspEI	TCCGGA	1 cut(s)	533
BspFNI	CGCG	1 cut(s)	164
BspLI	GGNNCC	1 cut(s)	532
BspT104I	TTCGAA	1 cut(s)	398
BspTNI	GGTCTC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	652
BsrGI	TGTACA	1 cut(s)	499
BsrI	ACTGG	2 cut(s)	512, 656
BssECI	CCNNGG	2 cut(s)	120, 506
BssMI	GATC	2 cut(s)	277, 309
BssSI	CACGAG	1 cut(s)	108
Bst2BI	CACGAG	1 cut(s)	108
Bst4CI	ACNGT	3 cut(s)	80, 438, 480
Bst6I	CTCTTC	1 cut(s)	264
BstAUI	TGTACA	1 cut(s)	499
BstBI	TTCGAA	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	162
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	3 cut(s)	130, 214, 502
BstFNI	CGCG	1 cut(s)	164
BstKTI	GATC	2 cut(s)	280, 312
BstMAI	GTCTC	2 cut(s)	215, 300
BstMBI	GATC	2 cut(s)	277, 309
BstMCI	CGRYCG	1 cut(s)	280
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 337, 352, 576
BstNSI	RCATGY	1 cut(s)	586
BstSCI	CCNGG	2 cut(s)	505, 506
BstSFI	CTRYAG	1 cut(s)	40
BstUI	CGCG	1 cut(s)	164
BsuRI	GGCC	2 cut(s)	102, 511
BtgI	CCRYGG	1 cut(s)	120
BtrI	CACGTC	2 cut(s)	68, 539
BtsCI	GGATG	3 cut(s)	130, 214, 502
BtsI	GCAGTG	1 cut(s)	640
BtsIMutI	CAGTG	1 cut(s)	640
Cac8I	GCNNGC	1 cut(s)	162
Cfr13I	GGNCC	3 cut(s)	4, 509, 531
Cfr9I	CCCGGG	1 cut(s)	506
Csp6I	GTAC	3 cut(s)	274, 481, 500
CviAII	CATG	2 cut(s)	560, 583
CviQI	GTAC	3 cut(s)	274, 481, 500
DpnI	GATC	2 cut(s)	279, 311
DpnII	GATC	2 cut(s)	277, 309
DraI	TTTAAA	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco31I	GGTCTC	1 cut(s)	215
Eco47I	GGWCC	2 cut(s)	4, 531
Eco57I	CTGAAG	2 cut(s)	362, 473
Eco88I	CYCGRG	1 cut(s)	506
EcoRI	GAATTC	1 cut(s)	167
Esp3I	CGTCTC	1 cut(s)	300
FaeI	CATG	2 cut(s)	563, 586
FaiI	YATR	7 cut(s)	48, 362, 368, 441, 462, 561, 584
FaqI	GGGAC	1 cut(s)	376
FatI	CATG	2 cut(s)	559, 582
FauI	CCCGC	1 cut(s)	44
Fnu4HI	GCNGC	3 cut(s)	329, 382, 491
FokI	GGATG	3 cut(s)	137, 221, 489
Fsp4HI	GCNGC	3 cut(s)	329, 382, 491
GluI	GCNGC	3 cut(s)	329, 382, 491
GsaI	CCCAGC	1 cut(s)	579
HaeIII	GGCC	2 cut(s)	102, 511
HapII	CCGG	3 cut(s)	206, 507, 534
Hin1II	CATG	2 cut(s)	563, 586
HinfI	GANTC	1 cut(s)	422
HpaII	CCGG	3 cut(s)	206, 507, 534
HphI	GGTGA	3 cut(s)	166, 409, 602
Hpy166II	GTNNAC	1 cut(s)	417
Hpy188I	TCNGA	4 cut(s)	244, 314, 453, 474
Hpy188III	TCNNGA	2 cut(s)	534, 565
Hpy8I	GTNNAC	1 cut(s)	417
Hpy99I	CGWCG	3 cut(s)	80, 98, 248
HpyAV	CCTTC	2 cut(s)	405, 448
HpyCH4III	ACNGT	3 cut(s)	80, 438, 480
HpyCH4IV	ACGT	4 cut(s)	67, 93, 538, 633
HpyCH4V	TGCA	2 cut(s)	143, 645
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 337, 352, 576
HpySE526I	ACGT	4 cut(s)	67, 93, 538, 633
Hsp92II	CATG	2 cut(s)	563, 586
Kpn2I	TCCGGA	1 cut(s)	533
Kzo9I	GATC	2 cut(s)	277, 309
LpnPI	CCDG	8 cut(s)	219, 502, 520, 525, 547, 578, 589, 637
LweI	GCATC	1 cut(s)	115
MaeII	ACGT	4 cut(s)	67, 93, 538, 633
MaeIII	GTNAC	2 cut(s)	68, 89
MalI	GATC	2 cut(s)	279, 311
MboI	GATC	2 cut(s)	277, 309
MboII	GAAGA	4 cut(s)	279, 281, 282, 584
MfeI	CAATTG	1 cut(s)	200
MluCI	AATT	2 cut(s)	167, 200
MmeI	TCCRAC	1 cut(s)	267
MroI	TCCGGA	1 cut(s)	533
MseI	TTAA	1 cut(s)	29
MslI	CAYNNNNRTG	1 cut(s)	645
MspI	CCGG	3 cut(s)	206, 507, 534
MspR9I	CCNGG	2 cut(s)	507, 508
MunI	CAATTG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	4 cut(s)	125, 337, 352, 576
NciI	CCSGG	2 cut(s)	507, 508
NdeII	GATC	2 cut(s)	277, 309
NlaIII	CATG	2 cut(s)	563, 586
NlaIV	GGNNCC	1 cut(s)	532
NmuCI	GTSAC	1 cut(s)	68
NspI	RCATGY	1 cut(s)	586
NspV	TTCGAA	1 cut(s)	398
PciI	ACATGT	1 cut(s)	582
PcsI	WCGNNNNNNNCGW	2 cut(s)	273, 410
PfeI	GAWTC	1 cut(s)	422
PkrI	GCNGC	3 cut(s)	330, 383, 492
Ple19I	CGATCG	1 cut(s)	280
PscI	ACATGT	1 cut(s)	582
PspFI	CCCAGC	1 cut(s)	575
PspN4I	GGNNCC	1 cut(s)	532
PspPI	GGNCC	3 cut(s)	4, 509, 531
PvuI	CGATCG	1 cut(s)	280
RsaI	GTAC	3 cut(s)	275, 482, 501
RsaNI	GTAC	3 cut(s)	274, 481, 500
RseI	CAYNNNNRTG	1 cut(s)	645
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	3 cut(s)	329, 382, 491
Sau3AI	GATC	2 cut(s)	277, 309
Sau96I	GGNCC	3 cut(s)	4, 509, 531
ScrFI	CCNGG	2 cut(s)	507, 508
SfaNI	GCATC	1 cut(s)	115
SfcI	CTRYAG	1 cut(s)	40
SfuI	TTCGAA	1 cut(s)	398
SinI	GGWCC	2 cut(s)	4, 531
SmaI	CCCGGG	1 cut(s)	508
SmiMI	CAYNNNNRTG	1 cut(s)	645
Sse9I	AATT	2 cut(s)	167, 200
SsiI	CCGC	5 cut(s)	51, 164, 329, 381, 491
StyD4I	CCNGG	2 cut(s)	505, 506
TaaI	ACNGT	3 cut(s)	80, 438, 480
TaiI	ACGT	4 cut(s)	70, 96, 541, 636
TaqI	TCGA	3 cut(s)	267, 280, 398
TaqII	GACCGA	1 cut(s)	223
TasI	AATT	2 cut(s)	167, 200
TatI	WGTACW	1 cut(s)	499
TauI	GCSGC	3 cut(s)	331, 384, 493
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	1 cut(s)	647
TseFI	GTSAC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	68
TspGWI	ACGGA	1 cut(s)	77
TspMI	CCCGGG	1 cut(s)	506
TspRI	CASTG	1 cut(s)	647
VpaK11BI	GGWCC	2 cut(s)	4, 531
XapI	RAATTY	1 cut(s)	167
XceI	RCATGY	1 cut(s)	586
XmaI	CCCGGG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.