Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006816

Physical Location & Seq

Genomic Coordinates Reverse (-)

19502053 .. 19502919

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g14880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGGCCTCAACAAAGCACCCGAACCATTAAAACTCCTCTGCAGCTATGGCGGTAAAATCCTCCCTCGCCACTCTGACGGCACGCTCCGGTACGTCGGCGGCCACAATCGCGTCCTCTCCGTCGATTCATCCATTACGTATACAGAGCTAATGGTGAAGCTTGCGGAGTTGTGTGGCTATTCCGTGGAATTGCGGTGTCCGTTGCCGAACGGAGACTTGGAGACCTTGATTTCCGTCAAGTCCGACGAGGATTTGGCGAATATCATAGAAGAGTACGGTCGAGCGTCTTCTCCCCCTCATTCTCTGAAGATCAGAGCCATTCTCTCGCCGCCGAAGTCCCTGAAGCAAATCTCGCCTCCGATGTCCACTGCGACGAGCGGCGGCGACTCGTCCCCTTCGAAATCGGTTTTCTCATCCGCTGATTCGCCTCGAGTTTCGCCCCCGCAACGGTTCGTTTCGCCTCAAGTTTCGCCACCGAGGCGGTACGTTTCGCCGCACGTATCGCCACCAAAACGGTATGCTTCGCCGCCGGATAGATACCCCGCCGGTCATCAGCGAGGGTTCGGACGAGTCTGCTACTATCCTTGCCATCTCCAGCCTCAGGGTCAGAGGAGTGGCCCCTGCGACATGTCGTATGTTCATCATTATCAGCAGTATCGTCACTACCACCATCATCCTCGCGTTCCCCACTGCGACATGTCGTATGGAAGGAACTTCACGCAGAGGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1

Protein Analysis

244

Amino Acids

27.06

Weight (kDa)

9.39

Isoelectric Point (pI)

76.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48240 AT5G63130 AT5G63130
fragaria_vesca	FvH4_5g06180 FvH4_5g06180
malus_domestica	MD04G1170400.v1.1 MD04G1170600.v1.1 MD06G1166200.v1.1 MD07G1052300.v1.1 MD14G1172100.v1.1
prunus_persica	Prupe.5G166200_v2.0.a1 Prupe.5G166200_v2.0.a1
pyrus_communis	pycom06g14880 pycom14g14360
rosa_chinensis	RchiOBHm_Chr7g0192621
rosa_laevigata	RLG00000004344
rosa_multiflora	Rmu_sc0004161.1_g000005 Rmu_sc0036738.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262830
rosa_rugosa	Rorug07G0003000.1 Rorug07G0003100
rosa_samantha	Rh7AG128200 Rh7BG129800 Rh7CG133100 Rh7DG130800
rosa_wichuraiana	Rw7G010960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	378
AccI	GTMKAC	1 cut(s)	140
AccII	CGCG	2 cut(s)	111, 681
AcoI	YGGCCR	1 cut(s)	100
AcuI	CTGAAG	2 cut(s)	326, 362
AfaI	GTAC	3 cut(s)	92, 275, 485
AfiI	CCNNNNNNNGG	2 cut(s)	447, 601
AflIII	ACRYGT	2 cut(s)	627, 696
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AluBI	AGCT	3 cut(s)	45, 148, 160
AluI	AGCT	3 cut(s)	45, 148, 160
Alw26I	GTCTC	2 cut(s)	207, 215
Ama87I	CYCGRG	1 cut(s)	429
AoxI	GGCC	3 cut(s)	4, 100, 616
ApeKI	GCWGC	1 cut(s)	42
AspS9I	GGNCC	2 cut(s)	4, 617
AsuHPI	GGTGA	1 cut(s)	166
AsuII	TTCGAA	1 cut(s)	398
AvaI	CYCGRG	1 cut(s)	429
AxyI	CCTNAGG	1 cut(s)	600
BbsI	GAAGAC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	2 cut(s)	597, 678
BceAI	ACGGC	1 cut(s)	94
BcoDI	GTCTC	2 cut(s)	207, 215
BfmI	CTRYAG	1 cut(s)	40
BglI	GCCNNNNNGGC	1 cut(s)	478
BisI	GCNGC	7 cut(s)	43, 100, 329, 379, 382, 494, 527
BlsI	GCNGC	7 cut(s)	44, 101, 330, 380, 383, 495, 528
BmeT110I	CYCGRG	1 cut(s)	429
BmgT120I	GGNCC	2 cut(s)	4, 617
BmiI	GGNNCC	1 cut(s)	619
BpiI	GAAGAC	1 cut(s)	279
BplI	GAGNNNNNCTC	2 cut(s)	306, 338
BpmI	CTGGAG	1 cut(s)	578
Bpu14I	TTCGAA	1 cut(s)	398
BpuEI	CTTGAG	1 cut(s)	447
BsaAI	YACGTR	2 cut(s)	138, 499
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	183, 476
BsaWI	WCCGGW	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	2 cut(s)	447, 601
Bse118I	RCCGGY	1 cut(s)	545
Bse21I	CCTNAGG	1 cut(s)	600
BseDI	CCNNGG	2 cut(s)	183, 476
BseGI	GGATG	3 cut(s)	128, 413, 673
BseLI	CCNNNNNNNGG	2 cut(s)	447, 601
BseMII	CTCAG	1 cut(s)	614
BseRI	GAGGAG	2 cut(s)	26, 625
BseXI	GCAGC	1 cut(s)	54
Bsh1236I	CGCG	2 cut(s)	111, 681
Bsh1285I	CGRYCG	1 cut(s)	280
BshFI	GGCC	3 cut(s)	6, 102, 618
BsiEI	CGRYCG	1 cut(s)	280
BsiHKCI	CYCGRG	1 cut(s)	429
BsiSI	CCGG	3 cut(s)	88, 530, 546
BslFI	GGGAC	2 cut(s)	322, 376
BslI	CCNNNNNNNGG	2 cut(s)	447, 601
BsmAI	GTCTC	2 cut(s)	207, 215
BsmFI	GGGAC	2 cut(s)	322, 376
BsnI	GGCC	3 cut(s)	6, 102, 618
Bso31I	GGTCTC	1 cut(s)	215
BsoBI	CYCGRG	1 cut(s)	429
Bsp119I	TTCGAA	1 cut(s)	398
Bsp143I	GATC	1 cut(s)	309
BspANI	GGCC	3 cut(s)	6, 102, 618
BspCNI	CTCAG	1 cut(s)	613
BspFNI	CGCG	2 cut(s)	111, 681
BspLI	GGNNCC	1 cut(s)	619
BspMAI	CTGCAG	1 cut(s)	44
BspT104I	TTCGAA	1 cut(s)	398
BspTNI	GGTCTC	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	378
BsrFI	RCCGGY	1 cut(s)	545
BssAI	RCCGGY	1 cut(s)	545
BssECI	CCNNGG	2 cut(s)	183, 476
BssMI	GATC	1 cut(s)	309
BssNAI	GTATAC	1 cut(s)	141
Bst1107I	GTATAC	1 cut(s)	141
Bst4CI	ACNGT	3 cut(s)	278, 450, 516
Bst6I	CTCTTC	1 cut(s)	264
BstBAI	YACGTR	2 cut(s)	138, 499
BstBI	TTCGAA	1 cut(s)	398
BstC8I	GCNNGC	2 cut(s)	83, 162
BstDEI	CTNAG	1 cut(s)	600
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	3 cut(s)	128, 413, 673
BstFNI	CGCG	2 cut(s)	111, 681
BstKTI	GATC	1 cut(s)	312
BstMAI	GTCTC	2 cut(s)	207, 215
BstMBI	GATC	1 cut(s)	309
BstMCI	CGRYCG	1 cut(s)	280
BstMWI	GCNNNNNNNGC	5 cut(s)	48, 108, 352, 478, 502
BstNSI	RCATGY	2 cut(s)	631, 700
BstSFI	CTRYAG	1 cut(s)	40
BstSNI	TACGTA	1 cut(s)	138
BstUI	CGCG	2 cut(s)	111, 681
BstV1I	GCAGC	1 cut(s)	54
BstV2I	GAAGAC	1 cut(s)	279
BstZ17I	GTATAC	1 cut(s)	141
Bsu36I	CCTNAGG	1 cut(s)	600
BsuRI	GGCC	3 cut(s)	6, 102, 618
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	3 cut(s)	128, 413, 673
BtsI	GCAGTG	2 cut(s)	366, 688
BtsIMutI	CAGTG	2 cut(s)	366, 688
Cac8I	GCNNGC	2 cut(s)	83, 162
Cfr10I	RCCGGY	1 cut(s)	545
Cfr13I	GGNCC	2 cut(s)	4, 617
CseI	GACGC	2 cut(s)	100, 273
Csp6I	GTAC	3 cut(s)	91, 274, 484
CviAII	CATG	2 cut(s)	628, 697
CviJI	RGCY	9 cut(s)	6, 45, 102, 148, 160, 177, 317, 598, 618
CviKI_1	RGCY	9 cut(s)	6, 45, 102, 148, 160, 177, 317, 598, 618
CviQI	GTAC	3 cut(s)	91, 274, 484
DdeI	CTNAG	1 cut(s)	600
DpnI	GATC	1 cut(s)	311
DpnII	GATC	1 cut(s)	309
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco105I	TACGTA	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	215
Eco57I	CTGAAG	2 cut(s)	326, 362
Eco81I	CCTNAGG	1 cut(s)	600
Eco88I	CYCGRG	1 cut(s)	429
FaeI	CATG	2 cut(s)	631, 700
FaiI	YATR	9 cut(s)	48, 141, 266, 519, 629, 636, 698, 705, 730
FaqI	GGGAC	2 cut(s)	322, 376
FatI	CATG	2 cut(s)	627, 696
FauI	CCCGC	2 cut(s)	450, 550
FblI	GTMKAC	1 cut(s)	140
Fnu4HI	GCNGC	7 cut(s)	43, 100, 329, 379, 382, 494, 527
FokI	GGATG	3 cut(s)	115, 400, 660
Fsp4HI	GCNGC	7 cut(s)	43, 100, 329, 379, 382, 494, 527
GluI	GCNGC	7 cut(s)	43, 100, 329, 379, 382, 494, 527
GsuI	CTGGAG	1 cut(s)	578
HaeIII	GGCC	3 cut(s)	6, 102, 618
HapII	CCGG	3 cut(s)	88, 530, 546
HgaI	GACGC	2 cut(s)	100, 273
Hin1II	CATG	2 cut(s)	631, 700
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	4 cut(s)	125, 386, 422, 570
HpaII	CCGG	3 cut(s)	88, 530, 546
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	2 cut(s)	141, 366
Hpy188I	TCNGA	7 cut(s)	76, 244, 306, 314, 360, 566, 609
Hpy8I	GTNNAC	2 cut(s)	141, 366
Hpy99I	CGWCG	4 cut(s)	98, 125, 248, 376
HpyAV	CCTTC	2 cut(s)	405, 702
HpyCH4III	ACNGT	3 cut(s)	278, 450, 516
HpyCH4IV	ACGT	4 cut(s)	93, 137, 486, 498
HpyCH4V	TGCA	1 cut(s)	42
HpyF10VI	GCNNNNNNNGC	5 cut(s)	48, 108, 352, 478, 502
HpyF3I	CTNAG	1 cut(s)	600
HpySE526I	ACGT	4 cut(s)	93, 137, 486, 498
Hsp92II	CATG	2 cut(s)	631, 700
Kzo9I	GATC	1 cut(s)	309
LmnI	GCTCC	1 cut(s)	90
LpnPI	CCDG	7 cut(s)	101, 353, 543, 559, 587, 608, 634
Lsp1109I	GCAGC	1 cut(s)	54
MaeII	ACGT	4 cut(s)	93, 137, 486, 498
MaeIII	GTNAC	1 cut(s)	659
MalI	GATC	1 cut(s)	311
MbiI	CCGCTC	1 cut(s)	378
MboI	GATC	1 cut(s)	309
MboII	GAAGA	3 cut(s)	279, 281, 319
MluCI	AATT	1 cut(s)	188
MlyI	GAGTC	2 cut(s)	380, 579
MmeI	TCCRAC	1 cut(s)	267
MseI	TTAA	1 cut(s)	29
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	3 cut(s)	88, 530, 546
MvnI	CGCG	2 cut(s)	111, 681
MwoI	GCNNNNNNNGC	5 cut(s)	48, 108, 352, 478, 502
NdeII	GATC	1 cut(s)	309
NlaIII	CATG	2 cut(s)	631, 700
NlaIV	GGNNCC	1 cut(s)	619
NmuCI	GTSAC	1 cut(s)	659
NspI	RCATGY	2 cut(s)	631, 700
NspV	TTCGAA	1 cut(s)	398
PaeR7I	CTCGAG	1 cut(s)	429
PciI	ACATGT	2 cut(s)	627, 696
PcsI	WCGNNNNNNNCGW	1 cut(s)	395
PfeI	GAWTC	2 cut(s)	125, 422
PkrI	GCNGC	7 cut(s)	44, 101, 330, 380, 383, 495, 528
PleI	GAGTC	2 cut(s)	380, 578
PpsI	GAGTC	2 cut(s)	380, 578
Ppu21I	YACGTR	2 cut(s)	138, 499
PscI	ACATGT	2 cut(s)	627, 696
PspN4I	GGNNCC	1 cut(s)	619
PspPI	GGNCC	2 cut(s)	4, 617
PspXI	VCTCGAGB	1 cut(s)	429
PstI	CTGCAG	1 cut(s)	44
RsaI	GTAC	3 cut(s)	92, 275, 485
RsaNI	GTAC	3 cut(s)	91, 274, 484
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	7 cut(s)	43, 100, 329, 379, 382, 494, 527
Sau3AI	GATC	1 cut(s)	309
Sau96I	GGNCC	2 cut(s)	4, 617
SchI	GAGTC	2 cut(s)	380, 579
SetI	ASST	8 cut(s)	47, 96, 140, 150, 162, 227, 489, 501
SfcI	CTRYAG	1 cut(s)	40
Sfr274I	CTCGAG	1 cut(s)	429
SfuI	TTCGAA	1 cut(s)	398
SlaI	CTCGAG	1 cut(s)	429
SmlI	CTYRAG	2 cut(s)	429, 462
SmoI	CTYRAG	2 cut(s)	429, 462
SnaBI	TACGTA	1 cut(s)	138
Sse9I	AATT	1 cut(s)	188
TaaI	ACNGT	3 cut(s)	278, 450, 516
TaiI	ACGT	4 cut(s)	96, 140, 489, 501
TaqI	TCGA	4 cut(s)	123, 280, 398, 430
TasI	AATT	1 cut(s)	188
TauI	GCSGC	6 cut(s)	102, 331, 381, 384, 496, 529
TfiI	GAWTC	2 cut(s)	125, 422
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	2 cut(s)	373, 695
TseFI	GTSAC	1 cut(s)	659
TseI	GCWGC	1 cut(s)	42
Tsp45I	GTSAC	1 cut(s)	659
TspDTI	ATGAA	2 cut(s)	117, 629
TspGWI	ACGGA	5 cut(s)	109, 172, 189, 223, 225
TspRI	CASTG	2 cut(s)	373, 695
XceI	RCATGY	2 cut(s)	631, 700
XhoI	CTCGAG	1 cut(s)	429
XmiI	GTMKAC	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.