Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036738.1

Orthogroup ID

OG0006816

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 988

Gene Structure 988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036738.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 481 bp

ctcctccgccacaccgacggccagctccgctacgtcggcggccacacccgcgtcctctccgtcgatccctccatttccttcccagaattaatggtgaagctcgctgagttctgcggccactccgtcactctcaggtgtcaattgctgggcggcgacttggagacgttgatttcgatcaagtccgacgaggatttggcgaatctaatagaagagtacgatcgtgtttctccttctcgttcctataagatcagagcgattctgtctcccccgaaaccgctgaaacaagtctcgcctgctcagtccacaacatcgaccagcggcgactgttcgccgtcgaaatcgctctattccgacttcgattcgccgccgaagcgttactattccccgacggcggtcgggtttcagagaggtccgggaaaagtgtgctactatccttgccatgtccagcgaactccctgcgagattccgtatcagcatcacc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1

Protein Analysis

160

Amino Acids

17.81

Weight (kDa)

8.24

Isoelectric Point (pI)

56.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48240 AT5G63130 AT5G63130
fragaria_vesca	FvH4_5g06180 FvH4_5g06180
malus_domestica	MD04G1170400.v1.1 MD04G1170600.v1.1 MD06G1166200.v1.1 MD07G1052300.v1.1 MD14G1172100.v1.1
prunus_persica	Prupe.5G166200_v2.0.a1 Prupe.5G166200_v2.0.a1
pyrus_communis	pycom06g14880 pycom14g14360
rosa_chinensis	RchiOBHm_Chr7g0192621
rosa_laevigata	RLG00000004344
rosa_multiflora	Rmu_sc0004161.1_g000005 Rmu_sc0036738.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262830
rosa_rugosa	Rorug07G0003000.1 Rorug07G0003100
rosa_samantha	Rh7AG128200 Rh7BG129800 Rh7CG133100 Rh7DG130800
rosa_wichuraiana	Rw7G010960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	51
AclWI	GGATC	1 cut(s)	59
AcoI	YGGCCR	3 cut(s)	19, 40, 115
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	391
AluBI	AGCT	2 cut(s)	25, 100
AluI	AGCT	2 cut(s)	25, 100
Alw26I	GTCTC	3 cut(s)	155, 267, 292
AlwI	GGATC	1 cut(s)	59
AoxI	GGCC	3 cut(s)	19, 40, 115
ArsI	GACNNNNNNTTYG	2 cut(s)	154, 186
AseI	ATTAAT	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	410
AsuC2I	CCSGG	1 cut(s)	414
AsuHPI	GGTGA	2 cut(s)	106, 470
AvaII	GGWCC	1 cut(s)	410
BceAI	ACGGC	3 cut(s)	34, 316, 405
BcgI	CGANNNNNNTGC	2 cut(s)	438, 472
BcnI	CCSGG	1 cut(s)	414
BcoDI	GTCTC	3 cut(s)	155, 267, 292
BisI	GCNGC	5 cut(s)	40, 115, 151, 319, 365
BlsI	GCNGC	5 cut(s)	41, 116, 152, 320, 366
Bme1390I	CCNGG	1 cut(s)	414
Bme18I	GGWCC	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	410
BmrFI	CCNGG	1 cut(s)	414
BoxI	GACNNNNGTC	1 cut(s)	392
BpuMI	CCSGG	1 cut(s)	414
BsaBI	GATNNNNATC	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
Bse8I	GATNNNNATC	1 cut(s)	173
BseJI	GATNNNNATC	1 cut(s)	173
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseMII	CTCAG	3 cut(s)	96, 145, 311
BseYI	CCCAGC	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	51
Bsh1285I	CGRYCG	2 cut(s)	220, 396
BshFI	GGCC	3 cut(s)	21, 42, 117
BsiEI	CGRYCG	2 cut(s)	220, 396
BsiSI	CCGG	1 cut(s)	413
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmAI	GTCTC	3 cut(s)	155, 267, 292
BsmBI	CGTCTC	1 cut(s)	155
BsnI	GGCC	3 cut(s)	21, 42, 117
Bsp143I	GATC	4 cut(s)	64, 174, 217, 246
BspANI	GGCC	3 cut(s)	21, 42, 117
BspCNI	CTCAG	3 cut(s)	97, 144, 310
BspFNI	CGCG	1 cut(s)	51
BspPI	GGATC	1 cut(s)	59
BssMI	GATC	4 cut(s)	64, 174, 217, 246
Bst4CI	ACNGT	1 cut(s)	326
Bst6I	CTCTTC	1 cut(s)	204
BstC8I	GCNNGC	3 cut(s)	23, 102, 294
BstDEI	CTNAG	3 cut(s)	105, 131, 297
BstFNI	CGCG	1 cut(s)	51
BstKTI	GATC	4 cut(s)	67, 177, 220, 249
BstMAI	GTCTC	3 cut(s)	155, 267, 292
BstMBI	GATC	4 cut(s)	64, 174, 217, 246
BstMCI	CGRYCG	2 cut(s)	220, 396
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 36, 48, 370
BstPAI	GACNNNNGTC	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	412
BstUI	CGCG	1 cut(s)	51
BsuRI	GGCC	3 cut(s)	21, 42, 117
Cac8I	GCNNGC	3 cut(s)	23, 102, 294
Cfr13I	GGNCC	1 cut(s)	410
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	1 cut(s)	440
CviJI	RGCY	5 cut(s)	21, 25, 42, 100, 117
CviKI_1	RGCY	5 cut(s)	21, 25, 42, 100, 117
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	3 cut(s)	105, 131, 297
DpnI	GATC	4 cut(s)	66, 176, 219, 248
DpnII	GATC	4 cut(s)	64, 174, 217, 246
EaeI	YGGCCR	3 cut(s)	19, 40, 115
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	410
Esp3I	CGTCTC	1 cut(s)	155
FaeI	CATG	1 cut(s)	443
FaiI	YATR	2 cut(s)	243, 441
FatI	CATG	1 cut(s)	439
FauI	CCCGC	1 cut(s)	56
Fnu4HI	GCNGC	5 cut(s)	40, 115, 151, 319, 365
Fsp4HI	GCNGC	5 cut(s)	40, 115, 151, 319, 365
GluI	GCNGC	5 cut(s)	40, 115, 151, 319, 365
GsaI	CCCAGC	1 cut(s)	149
HaeIII	GGCC	3 cut(s)	21, 42, 117
HapII	CCGG	1 cut(s)	413
HgaI	GACGC	1 cut(s)	40
Hin1II	CATG	1 cut(s)	443
HinfI	GANTC	4 cut(s)	199, 256, 359, 463
HpaII	CCGG	1 cut(s)	413
HphI	GGTGA	2 cut(s)	106, 470
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	4 cut(s)	184, 251, 352, 405
Hpy8I	GTNNAC	1 cut(s)	303
Hpy99I	CGWCG	6 cut(s)	20, 38, 65, 188, 337, 391
HpyAV	CCTTC	2 cut(s)	88, 240
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	2 cut(s)	33, 164
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 36, 48, 370
HpyF3I	CTNAG	3 cut(s)	105, 131, 297
HpySE526I	ACGT	2 cut(s)	33, 164
Hsp92II	CATG	1 cut(s)	443
Kzo9I	GATC	4 cut(s)	64, 174, 217, 246
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	9 cut(s)	35, 96, 118, 131, 306, 328, 426, 458, 469
MaeII	ACGT	2 cut(s)	33, 164
MaeIII	GTNAC	2 cut(s)	124, 374
MalI	GATC	4 cut(s)	66, 176, 219, 248
MboI	GATC	4 cut(s)	64, 174, 217, 246
MboII	GAAGA	1 cut(s)	221
MfeI	CAATTG	1 cut(s)	140
MluCI	AATT	2 cut(s)	86, 140
MmeI	TCCRAC	2 cut(s)	207, 375
MnlI	CCTC	5 cut(s)	14, 65, 79, 181, 401
MseI	TTAA	1 cut(s)	89
MspA1I	CMGCKG	2 cut(s)	277, 318
MspI	CCGG	1 cut(s)	413
MspR9I	CCNGG	1 cut(s)	414
MunI	CAATTG	1 cut(s)	140
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	4 cut(s)	27, 36, 48, 370
NciI	CCSGG	1 cut(s)	414
NdeII	GATC	4 cut(s)	64, 174, 217, 246
NlaIII	CATG	1 cut(s)	443
NmuCI	GTSAC	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	1 cut(s)	170
PfeI	GAWTC	4 cut(s)	199, 256, 359, 463
PfoI	TCCNGGA	1 cut(s)	412
PkrI	GCNGC	5 cut(s)	41, 116, 152, 320, 366
Ple19I	CGATCG	1 cut(s)	220
PshAI	GACNNNNGTC	1 cut(s)	392
PshBI	ATTAAT	1 cut(s)	89
PspFI	CCCAGC	1 cut(s)	145
PspPI	GGNCC	1 cut(s)	410
PvuI	CGATCG	1 cut(s)	220
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	5 cut(s)	40, 115, 151, 319, 365
Sau3AI	GATC	4 cut(s)	64, 174, 217, 246
Sau96I	GGNCC	1 cut(s)	410
ScrFI	CCNGG	1 cut(s)	414
SetI	ASST	6 cut(s)	27, 36, 102, 137, 167, 412
SinI	GGWCC	1 cut(s)	410
Sse9I	AATT	2 cut(s)	86, 140
StyD4I	CCNGG	1 cut(s)	412
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	2 cut(s)	36, 167
TaqI	TCGA	5 cut(s)	63, 173, 311, 335, 357
TasI	AATT	2 cut(s)	86, 140
TauI	GCSGC	5 cut(s)	42, 117, 153, 321, 367
TfiI	GAWTC	4 cut(s)	199, 256, 359, 463
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspGWI	ACGGA	3 cut(s)	49, 112, 456
VpaK11BI	GGWCC	1 cut(s)	410
VspI	ATTAAT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.