Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006816

Physical Location & Seq

Genomic Coordinates Forward (+)

26102688 .. 26102954

Gene Structure 267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1170400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGAGAAGCTTAAGGAGTTTTGTGGCTACTCTGTGGAATTGAAGTGTCCATTGCCGAACAGAGATTTGGAGACCTTGATTGCCGTAAAGTTCGACGAGGAATCGATGAATATCATCGAAGAGTACGGTCGAGCTTCTTCTCCACCTTGTCCTCTGAAGATCAAAACCATTCTTGCACCGCCGAAGTCCCCGAAGCAAATTTCACCTCTGATGTCCACTGCTACGAGCGGCGGCGAATCGCCACTCCGGCTGATGAGCTTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PB1

Protein Analysis

89

Amino Acids

9.77

Weight (kDa)

6.56

Isoelectric Point (pI)

77.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48240 AT5G63130 AT5G63130
fragaria_vesca	FvH4_5g06180 FvH4_5g06180
malus_domestica	MD04G1170400.v1.1 MD04G1170600.v1.1 MD06G1166200.v1.1 MD07G1052300.v1.1 MD14G1172100.v1.1
prunus_persica	Prupe.5G166200_v2.0.a1 Prupe.5G166200_v2.0.a1
pyrus_communis	pycom06g14880 pycom14g14360
rosa_chinensis	RchiOBHm_Chr7g0192621
rosa_laevigata	RLG00000004344
rosa_multiflora	Rmu_sc0004161.1_g000005 Rmu_sc0036738.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262830
rosa_rugosa	Rorug07G0003000.1 Rorug07G0003100
rosa_samantha	Rh7AG128200 Rh7BG129800 Rh7CG133100 Rh7DG130800
rosa_wichuraiana	Rw7G010960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	228
AciI	CCGC	3 cut(s)	179, 228, 231
AcsI	RAATTY	1 cut(s)	198
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	1 cut(s)	125
AflII	CTTAAG	1 cut(s)	11
AgsI	TTSAA	1 cut(s)	43
AjuI	GAANNNNNNNTTGG	2 cut(s)	50, 82
AluBI	AGCT	3 cut(s)	10, 134, 258
AluI	AGCT	3 cut(s)	10, 134, 258
Alw26I	GTCTC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	198
AsuHPI	GGTGA	1 cut(s)	195
BceAI	ACGGC	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	65
BfrI	CTTAAG	1 cut(s)	11
BglI	GCCNNNNNGGC	1 cut(s)	247
BisI	GCNGC	2 cut(s)	229, 232
BlsI	GCNGC	2 cut(s)	230, 233
Bsa29I	ATCGAT	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	110
BsaI	GGTCTC	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	50
Bse8I	GATNNNNATC	1 cut(s)	110
BseCI	ATCGAT	1 cut(s)	104
BseJI	GATNNNNATC	1 cut(s)	110
BseMI	GCAATG	1 cut(s)	50
Bsh1285I	CGRYCG	1 cut(s)	130
BshVI	ATCGAT	1 cut(s)	104
BsiEI	CGRYCG	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	247
BslFI	GGGAC	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	172
Bso31I	GGTCTC	1 cut(s)	65
Bsp143I	GATC	1 cut(s)	159
BspACI	CCGC	3 cut(s)	179, 228, 231
BspDI	ATCGAT	1 cut(s)	104
BspTI	CTTAAG	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	65
BsrBI	CCGCTC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	50
BssMI	GATC	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	128
Bst6I	CTCTTC	1 cut(s)	114
BstAFI	CTTAAG	1 cut(s)	11
BstKTI	GATC	1 cut(s)	162
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	1 cut(s)	159
BstMCI	CGRYCG	1 cut(s)	130
BstMWI	GCNNNNNNNGC	1 cut(s)	247
Bsu15I	ATCGAT	1 cut(s)	104
BsuTUI	ATCGAT	1 cut(s)	104
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	216
ClaI	ATCGAT	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	124
CviJI	RGCY	5 cut(s)	10, 27, 134, 250, 258
CviKI_1	RGCY	5 cut(s)	10, 27, 134, 250, 258
CviQI	GTAC	1 cut(s)	124
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	176
FaqI	GGGAC	1 cut(s)	172
Fnu4HI	GCNGC	2 cut(s)	229, 232
Fsp4HI	GCNGC	2 cut(s)	229, 232
GluI	GCNGC	2 cut(s)	229, 232
HapII	CCGG	1 cut(s)	247
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	2 cut(s)	101, 236
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	1 cut(s)	195
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	2 cut(s)	156, 210
Hpy8I	GTNNAC	1 cut(s)	216
Hpy99I	CGWCG	1 cut(s)	98
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4V	TGCA	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	159
LpnPI	CCDG	1 cut(s)	260
MalI	GATC	1 cut(s)	161
MbiI	CCGCTC	1 cut(s)	228
MboI	GATC	1 cut(s)	159
MboII	GAAGA	3 cut(s)	129, 131, 169
MluCI	AATT	2 cut(s)	38, 198
MnlI	CCTC	3 cut(s)	91, 162, 216
MseI	TTAA	1 cut(s)	12
MspCI	CTTAAG	1 cut(s)	11
MspI	CCGG	1 cut(s)	247
MwoI	GCNNNNNNNGC	1 cut(s)	247
NdeII	GATC	1 cut(s)	159
PfeI	GAWTC	2 cut(s)	101, 236
PkrI	GCNGC	2 cut(s)	230, 233
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	2 cut(s)	229, 232
Sau3AI	GATC	1 cut(s)	159
SetI	ASST	6 cut(s)	12, 77, 136, 148, 208, 260
SgeI	CNNG	8 cut(s)	88, 109, 143, 159, 185, 202, 237, 259
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	2 cut(s)	38, 198
SsiI	CCGC	3 cut(s)	179, 228, 231
TaaI	ACNGT	1 cut(s)	128
TaqI	TCGA	4 cut(s)	93, 104, 117, 130
TasI	AATT	2 cut(s)	38, 198
TauI	GCSGC	2 cut(s)	231, 234
TfiI	GAWTC	2 cut(s)	101, 236
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	122, 251
TspRI	CASTG	1 cut(s)	223
Vha464I	CTTAAG	1 cut(s)	11
XapI	RAATTY	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.