Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004906

Physical Location & Seq

Genomic Coordinates Forward (+)

18331509 .. 18335154

Gene Structure 3646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAGTGGGCGATTTTCTCGGTCAATCTATGTTGGTAACTTGCCCGGTGACATTAGGGAACATGAGATTGAAGATATCTTTTACAAGTATGGCCGCATTGTCGATATTGAATTGAAGGTTCCACCTCGGCCTCCATGTTATTGCTTTGTTGAGTTTGAGCATTCTCGGGATGCTGAAGATGCCATCAAGGGCCGTGATGGCTATAATTTGGATGGCTGTCGCTTGAGGGTTGAGCTTGCACATGGTGGTCGAGGACAGTCTTCAAGTGATCGTCGTGGTGGCTACGGTGGTGGTGGCAGCGGCTATGGTGGTGGAGGTGGTGGTGGTGGATCAGCTCGGTTTGGCGTCTCACGACACTCTGAATTCCGAGTTATTGTACGTGGGCTCCCATCATCTGCTTCATGGCAAGATTTGAAGGATCATATGCGGAAAGCTGGTGATGTGTGCTTTGCTGAGGTGACTCGAGACAGTGATGGAACTTATGGTGTTGTCGACTACACCAATTATGATGACATGAAGTATGCAATAAGGAAACTTGATGACACAGAGTTCAGAAACCCCTGGGCTAGAGGTTTTATCCGGGTTAAGAAATATGAAAGCTCCCGATCAAGAAGCAGAAGCCCAAGCAGAAGCAGAAGCAGAAGCAGAAGTCGAAGTCGTAGCCGAGGCCGTGGTCGCAGCCATAGCCGCAGTCGCAGCCTTAGCAGGAGCAAGAGCCCAAGGAAGGATCTGAGTAAATCACCAAGGCGATCCCTTTCCAGATCGATTTCAAAATCTAGATCGCCATCGCCCGACAAGAAGAAGAGTCCCCCCAGGGCAATGTCGAGATCAAAGTCCAGGTCCAGGTCCAGATCGAGGTCTCCGTCCAAATCTCCTCCCAAGGTTCGCGAAGGCAGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

300

Amino Acids

33.6

Weight (kDa)

10.83

Isoelectric Point (pI)

90.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 76	1.3e-17	RNA recognition motif
RRM_1	PF00076	124 - 186	1.5e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430
fragaria_vesca	FvH4_7g32850 FvH4_7g32850
malus_domestica	MD01G1227800.v1.1 MD01G1227900.v1.1 MD07G1298400.v1.1
prunus_persica	Prupe.2G318200_v2.0.a1
pyrus_communis	pycom01g23610 pycom07g27080
rosa_chinensis	RchiOBHm_Chr1g0382791
rosa_laevigata	RLG00000026159
rosa_multiflora	Rmu_sc0002242.1_g000001 Rmu_sc0003389.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277900
rosa_rugosa	Rorug01G0435900.1 Rorug01G0436000 Rorug01G0436100 Rorug01G0436200 Rorug01G0436300
rosa_samantha	Rh1AG461200 Rh1BG417900 Rh1CG431700 Rh1DG450100
rosa_wichuraiana	Rw1G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	492
AccII	CGCG	1 cut(s)	888
AciI	CCGC	4 cut(s)	94, 300, 427, 688
AclWI	GGATC	4 cut(s)	337, 426, 735, 744
AcoI	YGGCCR	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	195
AcyI	GRCGYC	1 cut(s)	345
AdeI	CACNNNGTG	1 cut(s)	245
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	3 cut(s)	724, 843, 855
AgsI	TTSAA	6 cut(s)	71, 110, 115, 264, 415, 771
AjnI	CCWGG	4 cut(s)	560, 812, 836, 842
AluBI	AGCT	4 cut(s)	235, 335, 434, 600
AluI	AGCT	4 cut(s)	235, 335, 434, 600
Alw26I	GTCTC	3 cut(s)	352, 459, 864
AlwI	GGATC	4 cut(s)	337, 426, 735, 744
Ama87I	CYCGRG	2 cut(s)	165, 462
AoxI	GGCC	4 cut(s)	91, 128, 190, 667
ApeKI	GCWGC	3 cut(s)	297, 678, 696
ApoI	RAATTY	1 cut(s)	362
ArsI	GACNNNNNNTTYG	2 cut(s)	824, 856
AspS9I	GGNCC	3 cut(s)	190, 840, 846
AsuC2I	CCSGG	2 cut(s)	45, 581
AsuHPI	GGTGA	4 cut(s)	59, 449, 469, 732
AvaI	CYCGRG	2 cut(s)	165, 462
AvaII	GGWCC	2 cut(s)	840, 846
BanII	GRGCYC	2 cut(s)	387, 719
BbsI	GAAGAC	1 cut(s)	252
BbvCI	CCTCAGC	1 cut(s)	453
BbvI	GCAGC	3 cut(s)	309, 690, 708
BccI	CCATC	6 cut(s)	191, 191, 206, 397, 467, 793
BceAI	ACGGC	2 cut(s)	177, 654
BciT130I	CCWGG	4 cut(s)	562, 814, 838, 844
BcnI	CCSGG	2 cut(s)	45, 581
BcoDI	GTCTC	3 cut(s)	352, 459, 864
BfaI	CTAG	2 cut(s)	567, 777
BglI	GCCNNNNNGGC	1 cut(s)	198
BisI	GCNGC	6 cut(s)	94, 298, 301, 679, 688, 697
BlsI	GCNGC	6 cut(s)	95, 299, 302, 680, 689, 698
Bme1390I	CCNGG	6 cut(s)	45, 562, 581, 814, 838, 844
Bme18I	GGWCC	2 cut(s)	840, 846
BmeT110I	CYCGRG	2 cut(s)	165, 462
BmgT120I	GGNCC	3 cut(s)	190, 840, 846
BmiI	GGNNCC	2 cut(s)	120, 386
BmrFI	CCNGG	6 cut(s)	45, 562, 581, 814, 838, 844
BmsI	GCATC	2 cut(s)	160, 169
BpiI	GAAGAC	1 cut(s)	252
Bpu10I	CCTNAGC	2 cut(s)	453, 701
BpuEI	CTTGAG	1 cut(s)	244
BpuMI	CCSGG	2 cut(s)	45, 581
Bsa29I	ATCGAT	1 cut(s)	764
BsaAI	YACGTR	1 cut(s)	380
BsaBI	GATNNNNATC	1 cut(s)	784
BsaHI	GRCGYC	1 cut(s)	345
BsaI	GGTCTC	1 cut(s)	864
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bsc4I	CCNNNNNNNGG	3 cut(s)	724, 843, 855
Bse3DI	GCAATG	1 cut(s)	825
Bse8I	GATNNNNATC	1 cut(s)	784
BseBI	CCWGG	4 cut(s)	562, 814, 838, 844
BseCI	ATCGAT	1 cut(s)	764
BseGI	GGATG	2 cut(s)	175, 217
BseJI	GATNNNNATC	1 cut(s)	784
BseLI	CCNNNNNNNGG	3 cut(s)	724, 843, 855
BseMI	GCAATG	1 cut(s)	825
BseMII	CTCAG	2 cut(s)	444, 722
BseRI	GAGGAG	1 cut(s)	864
BseXI	GCAGC	3 cut(s)	309, 690, 708
Bsh1236I	CGCG	1 cut(s)	888
BshFI	GGCC	4 cut(s)	93, 130, 192, 669
BshVI	ATCGAT	1 cut(s)	764
BsiHKCI	CYCGRG	2 cut(s)	165, 462
BsiSI	CCGG	2 cut(s)	45, 580
BslFI	GGGAC	1 cut(s)	792
BslI	CCNNNNNNNGG	3 cut(s)	724, 843, 855
BsmAI	GTCTC	3 cut(s)	352, 459, 864
BsmBI	CGTCTC	1 cut(s)	352
BsmFI	GGGAC	1 cut(s)	792
BsmI	GAATGC	1 cut(s)	160
BsnI	GGCC	4 cut(s)	93, 130, 192, 669
Bso31I	GGTCTC	1 cut(s)	864
BsoBI	CYCGRG	2 cut(s)	165, 462
Bsp1286I	GDGCHC	2 cut(s)	387, 719
Bsp68I	TCGCGA	1 cut(s)	888
BspACI	CCGC	4 cut(s)	94, 300, 427, 688
BspANI	GGCC	4 cut(s)	93, 130, 192, 669
BspCNI	CTCAG	2 cut(s)	445, 723
BspDI	ATCGAT	1 cut(s)	764
BspFNI	CGCG	1 cut(s)	888
BspLI	GGNNCC	2 cut(s)	120, 386
BspPI	GGATC	4 cut(s)	337, 426, 735, 744
BspTNI	GGTCTC	1 cut(s)	864
BsrDI	GCAATG	1 cut(s)	825
BssNI	GRCGYC	1 cut(s)	345
BssT1I	CCWWGG	3 cut(s)	719, 743, 879
Bst2UI	CCWGG	4 cut(s)	562, 814, 838, 844
Bst4CI	ACNGT	3 cut(s)	258, 287, 470
Bst6I	CTCTTC	1 cut(s)	797
BstACI	GRCGYC	1 cut(s)	345
BstBAI	YACGTR	1 cut(s)	380
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	3 cut(s)	453, 701, 731
BstDSI	CCRYGG	1 cut(s)	670
BstF5I	GGATG	2 cut(s)	175, 217
BstFNI	CGCG	1 cut(s)	888
BstMAI	GTCTC	3 cut(s)	352, 459, 864
BstMWI	GCNNNNNNNGC	8 cut(s)	179, 198, 675, 684, 687, 693, 696, 702
BstNI	CCWGG	4 cut(s)	562, 814, 838, 844
BstSCI	CCNGG	6 cut(s)	43, 560, 579, 812, 836, 842
BstUI	CGCG	1 cut(s)	888
BstV1I	GCAGC	3 cut(s)	309, 690, 708
BstV2I	GAAGAC	1 cut(s)	252
BstX2I	RGATCY	1 cut(s)	727
BstYI	RGATCY	1 cut(s)	727
Bsu15I	ATCGAT	1 cut(s)	764
BsuRI	GGCC	4 cut(s)	93, 130, 192, 669
BsuTUI	ATCGAT	1 cut(s)	764
BtgI	CCRYGG	1 cut(s)	670
BtgZI	GCGATG	1 cut(s)	771
BtsCI	GGATG	2 cut(s)	175, 217
BtsI	GCAGTG	1 cut(s)	901
BtsIMutI	CAGTG	2 cut(s)	475, 901
BtuMI	TCGCGA	1 cut(s)	888
Cac8I	GCNNGC	1 cut(s)	237
Cfr13I	GGNCC	3 cut(s)	190, 840, 846
ClaI	ATCGAT	1 cut(s)	764
CseI	GACGC	1 cut(s)	334
Csp6I	GTAC	1 cut(s)	377
CviAII	CATG	5 cut(s)	62, 135, 242, 402, 514
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	3 cut(s)	453, 701, 731
DraIII	CACNNNGTG	1 cut(s)	245
EaeI	YGGCCR	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	797
EarI	CTCTTC	1 cut(s)	797
Eco130I	CCWWGG	3 cut(s)	719, 743, 879
Eco24I	GRGCYC	2 cut(s)	387, 719
Eco31I	GGTCTC	1 cut(s)	864
Eco32I	GATATC	1 cut(s)	76
Eco47I	GGWCC	2 cut(s)	840, 846
Eco57I	CTGAAG	1 cut(s)	195
Eco88I	CYCGRG	2 cut(s)	165, 462
EcoRI	GAATTC	1 cut(s)	362
EcoRII	CCWGG	4 cut(s)	560, 812, 836, 842
EcoRV	GATATC	1 cut(s)	76
EcoT14I	CCWWGG	3 cut(s)	719, 743, 879
EcoT38I	GRGCYC	2 cut(s)	387, 719
ErhI	CCWWGG	3 cut(s)	719, 743, 879
Esp3I	CGTCTC	1 cut(s)	352
FaeI	CATG	5 cut(s)	65, 138, 245, 405, 517
FaqI	GGGAC	1 cut(s)	792
FatI	CATG	5 cut(s)	61, 134, 241, 401, 513
FauNDI	CATATG	1 cut(s)	423
FblI	GTMKAC	1 cut(s)	492
Fnu4HI	GCNGC	6 cut(s)	94, 298, 301, 679, 688, 697
FokI	GGATG	2 cut(s)	182, 224
FriOI	GRGCYC	2 cut(s)	387, 719
Fsp4HI	GCNGC	6 cut(s)	94, 298, 301, 679, 688, 697
FspBI	CTAG	2 cut(s)	567, 777
GluI	GCNGC	6 cut(s)	94, 298, 301, 679, 688, 697
HaeIII	GGCC	4 cut(s)	93, 130, 192, 669
HapII	CCGG	2 cut(s)	45, 580
HgaI	GACGC	1 cut(s)	334
Hin1I	GRCGYC	1 cut(s)	345
Hin1II	CATG	5 cut(s)	65, 138, 245, 405, 517
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
HinfI	GANTC	2 cut(s)	460, 805
HpaII	CCGG	2 cut(s)	45, 580
HphI	GGTGA	4 cut(s)	59, 449, 469, 732
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	4 cut(s)	361, 368, 554, 732
Hpy8I	GTNNAC	1 cut(s)	493
Hpy99I	CGWCG	1 cut(s)	276
HpyAV	CCTTC	4 cut(s)	109, 409, 718, 884
HpyCH4III	ACNGT	3 cut(s)	258, 287, 470
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	2 cut(s)	239, 524
HpyF10VI	GCNNNNNNNGC	8 cut(s)	179, 198, 675, 684, 687, 693, 696, 702
HpyF3I	CTNAG	3 cut(s)	453, 701, 731
HpySE526I	ACGT	1 cut(s)	379
Hsp92I	GRCGYC	1 cut(s)	345
Hsp92II	CATG	5 cut(s)	65, 138, 245, 405, 517
LmnI	GCTCC	3 cut(s)	390, 605, 708
Lsp1109I	GCAGC	3 cut(s)	309, 690, 708
LweI	GCATC	2 cut(s)	160, 169
MaeI	CTAG	2 cut(s)	567, 777
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	3 cut(s)	35, 47, 457
MboII	GAAGA	5 cut(s)	83, 188, 252, 811, 814
MflI	RGATCY	1 cut(s)	727
MhlI	GDGCHC	2 cut(s)	387, 719
MluCI	AATT	4 cut(s)	110, 205, 362, 502
MlyI	GAGTC	2 cut(s)	454, 814
MseI	TTAA	1 cut(s)	585
MspA1I	CMGCKG	1 cut(s)	300
MspI	CCGG	2 cut(s)	45, 580
MspR9I	CCNGG	6 cut(s)	45, 562, 581, 814, 838, 844
Mva1269I	GAATGC	1 cut(s)	160
MvaI	CCWGG	4 cut(s)	562, 814, 838, 844
MvnI	CGCG	1 cut(s)	888
MwoI	GCNNNNNNNGC	8 cut(s)	179, 198, 675, 684, 687, 693, 696, 702
NciI	CCSGG	2 cut(s)	45, 581
NdeI	CATATG	1 cut(s)	423
NlaIII	CATG	5 cut(s)	65, 138, 245, 405, 517
NlaIV	GGNNCC	2 cut(s)	120, 386
NmeAIII	GCCGAG	2 cut(s)	106, 689
NmuCI	GTSAC	2 cut(s)	47, 457
NruI	TCGCGA	1 cut(s)	888
PaeR7I	CTCGAG	1 cut(s)	462
PasI	CCCWGGG	2 cut(s)	561, 813
PcsI	WCGNNNNNNNCGW	1 cut(s)	860
PctI	GAATGC	1 cut(s)	160
PkrI	GCNGC	6 cut(s)	95, 299, 302, 680, 689, 698
PleI	GAGTC	2 cut(s)	454, 813
PpsI	GAGTC	2 cut(s)	454, 813
Ppu21I	YACGTR	1 cut(s)	380
Psp6I	CCWGG	4 cut(s)	560, 812, 836, 842
PspGI	CCWGG	4 cut(s)	560, 812, 836, 842
PspN4I	GGNNCC	2 cut(s)	120, 386
PspPI	GGNCC	3 cut(s)	190, 840, 846
PsuI	RGATCY	1 cut(s)	727
RruI	TCGCGA	1 cut(s)	888
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
SalI	GTCGAC	1 cut(s)	491
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	6 cut(s)	94, 298, 301, 679, 688, 697
Sau96I	GGNCC	3 cut(s)	190, 840, 846
SchI	GAGTC	2 cut(s)	454, 814
ScrFI	CCNGG	6 cut(s)	45, 562, 581, 814, 838, 844
SduI	GDGCHC	2 cut(s)	387, 719
SfaNI	GCATC	2 cut(s)	160, 169
Sfr274I	CTCGAG	1 cut(s)	462
SinI	GGWCC	2 cut(s)	840, 846
SlaI	CTCGAG	1 cut(s)	462
SmlI	CTYRAG	2 cut(s)	223, 462
SmoI	CTYRAG	2 cut(s)	223, 462
Sse9I	AATT	4 cut(s)	110, 205, 362, 502
SsiI	CCGC	4 cut(s)	94, 300, 427, 688
SspMI	CTAG	2 cut(s)	567, 777
StyD4I	CCNGG	6 cut(s)	43, 560, 579, 812, 836, 842
StyI	CCWWGG	3 cut(s)	719, 743, 879
TaaI	ACNGT	3 cut(s)	258, 287, 470
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	8 cut(s)	102, 250, 463, 492, 652, 764, 824, 854
TaqII	GACCGA	1 cut(s)	9
TasI	AATT	4 cut(s)	110, 205, 362, 502
TauI	GCSGC	3 cut(s)	96, 303, 690
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TscAI	CASTG	2 cut(s)	475, 901
TseFI	GTSAC	2 cut(s)	47, 457
TseI	GCWGC	3 cut(s)	297, 678, 696
Tsp45I	GTSAC	2 cut(s)	47, 457
TspDTI	ATGAA	3 cut(s)	390, 530, 609
TspGWI	ACGGA	1 cut(s)	852
TspRI	CASTG	2 cut(s)	475, 901
VpaK11BI	GGWCC	2 cut(s)	840, 846
XapI	RAATTY	1 cut(s)	362
XbaI	TCTAGA	1 cut(s)	776
XhoI	CTCGAG	1 cut(s)	462
XmiI	GTMKAC	1 cut(s)	492
XspI	CTAG	2 cut(s)	567, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.