Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004906

Physical Location & Seq

Genomic Coordinates Forward (+)

67828554 .. 67833347

Gene Structure 4794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG461200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGAGCAATGGAGCTTGTGGAGCACGGCTCACCTCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTGGTTTTGCTTTTCTTTTCTTTTTATATTGTCAACAGAGTACATGAAGATAATAACTGGACACCAAACTAGCAGATTTTTACAAATTGTTGCATGCAATATTCACATGAATTATTTCTTTGATTGCAGAAAATTTGCAGCAGCCAATCTTTTGGTCTCAAATATGAGTGGACGATTTTCTCGCACAATCTATGTCGGCAACCTACCCTCAGATATAAGAGAACGGGAGGTTGAAGATTTATTCTACAAGTATGGCCGCATTTTGGATATTGAATTGAAGGTTCCACCTCGCCCTCCATGCTATAGTTTTGTTGAGTTTGAGAGTTCTCGGGATGCAGAAGATGCAATTAGGGGTCGTGATGGGTACAACTTTGATGGCTGTCGTTTAAGGGTTGAGCTTGCCCATGGTGGTAGTAGGGGCCCGCCACCTAGTGATCGTCGTGGTGGATATGGTGGAGGCAGTAGCAGAGGAGGCAGCAGTGGGGGTCGATTTGGTGCCTCACGTCATTCTGAATTTCGAGTTATTGTTCGTGGCCTCCCTTCTTCTGCTTCGTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTGTGTTTTGCTGAGGTTTGTCGTGACAGTGAAGGGACTTATGGCTTGGTTGATTATAACAATTATGATGACATGAAATATGCTGTTCAGGAACTTCATGATACTGAATTTAAAAATCCTTGGGCAAGATCTTATATTCGGGTTAAAGTGTATGAAAGCAGCAGTCCCTCTAGGAGTCGGAGCAGAAGCCGTAGTGTAAGAAGGAATAGGAGCAATTCTTTGGAGCGATCTGTTTCTAGATCAGTTTCAAGATCTAGGTCTGCATCTCCGGTCAAACCTTCCAGGCCAAGATCAAGATCAATGTCGAGATCGAGGTCTGGGTCTCCCCGCCCGGCGCGGTCAGATAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

336

Amino Acids

37.92

Weight (kDa)

9.96

Isoelectric Point (pI)

75.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	85 - 152	2.3e-17	RNA recognition motif
RRM_1	PF00076	196 - 258	1.1e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430
fragaria_vesca	FvH4_7g32850 FvH4_7g32850
malus_domestica	MD01G1227800.v1.1 MD01G1227900.v1.1 MD07G1298400.v1.1
prunus_persica	Prupe.2G318200_v2.0.a1
pyrus_communis	pycom01g23610 pycom07g27080
rosa_chinensis	RchiOBHm_Chr1g0382791
rosa_laevigata	RLG00000026159
rosa_multiflora	Rmu_sc0002242.1_g000001 Rmu_sc0003389.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277900
rosa_rugosa	Rorug01G0435900.1 Rorug01G0436000 Rorug01G0436100 Rorug01G0436200 Rorug01G0436300
rosa_samantha	Rh1AG461200 Rh1BG417900 Rh1CG431700 Rh1DG450100
rosa_wichuraiana	Rw1G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	714
AbsI	CCTCGAGG	1 cut(s)	34
AccB1I	GGYRCC	1 cut(s)	560
AccII	CGCG	1 cut(s)	994
AciI	CCGC	4 cut(s)	322, 488, 985, 994
AclWI	GGATC	1 cut(s)	642
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	3 cut(s)	197, 578, 764
AdeI	CACNNNGTG	1 cut(s)	497
AfaI	GTAC	2 cut(s)	107, 431
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	5 cut(s)	299, 338, 343, 631, 906
AjiI	CACGTC	1 cut(s)	569
AjnI	CCWGG	1 cut(s)	938
AluBI	AGCT	3 cut(s)	14, 463, 650
AluI	AGCT	3 cut(s)	14, 463, 650
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	2 cut(s)	226, 984
AlwI	GGATC	1 cut(s)	642
Ama87I	CYCGRG	2 cut(s)	34, 393
AoxI	GGCC	4 cut(s)	319, 484, 598, 941
ApaI	GGGCCC	1 cut(s)	488
ApeKI	GCWGC	4 cut(s)	203, 206, 540, 816
ApoI	RAATTY	3 cut(s)	197, 578, 764
Asp700I	GAANNNNTTC	1 cut(s)	179
AspLEI	GCGC	1 cut(s)	994
AspS9I	GGNCC	2 cut(s)	484, 485
AsuC2I	CCSGG	1 cut(s)	989
AsuHPI	GGTGA	2 cut(s)	22, 665
AvaI	CYCGRG	2 cut(s)	34, 393
BaeGI	GKGCMC	1 cut(s)	488
BanI	GGYRCC	1 cut(s)	560
BanII	GRGCYC	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	25
BbvCI	CCTCAGC	1 cut(s)	669
BbvI	GCAGC	4 cut(s)	215, 218, 552, 828
BccI	CCATC	2 cut(s)	419, 434
BceAI	ACGGC	2 cut(s)	41, 831
BciT130I	CCWGG	1 cut(s)	940
BcnI	CCSGG	1 cut(s)	989
BcoDI	GTCTC	2 cut(s)	226, 984
BfaI	CTAG	5 cut(s)	135, 495, 828, 894, 912
BfmI	CTRYAG	1 cut(s)	367
BglII	AGATCT	2 cut(s)	785, 908
BisI	GCNGC	5 cut(s)	204, 207, 322, 541, 817
BlsI	GCNGC	5 cut(s)	205, 208, 323, 542, 818
Bme1390I	CCNGG	2 cut(s)	940, 989
BmeT110I	CYCGRG	2 cut(s)	34, 393
BmgBI	CACGTC	1 cut(s)	569
BmgT120I	GGNCC	2 cut(s)	484, 485
BmiI	GGNNCC	4 cut(s)	348, 485, 486, 562
BmrFI	CCNGG	2 cut(s)	940, 989
BmsI	GCATC	3 cut(s)	388, 397, 929
BplI	GAGNNNNNCTC	4 cut(s)	12, 44, 28, 60
Bpu10I	CCTNAGC	1 cut(s)	669
BpuMI	CCSGG	1 cut(s)	989
BsaBI	GATNNNNATC	1 cut(s)	952
BsaI	GGTCTC	2 cut(s)	226, 984
BsaJI	CCNNGG	2 cut(s)	469, 776
BsaWI	WCCGGW	1 cut(s)	925
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse1I	ACTGG	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	13
Bse8I	GATNNNNATC	1 cut(s)	952
BseBI	CCWGG	1 cut(s)	940
BseDI	CCNNGG	2 cut(s)	469, 776
BseGI	GGATG	1 cut(s)	403
BseJI	GATNNNNATC	1 cut(s)	952
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMI	GCAATG	1 cut(s)	13
BseMII	CTCAG	2 cut(s)	288, 660
BseNI	ACTGG	1 cut(s)	127
BseRI	GAGGAG	1 cut(s)	549
BseSI	GKGCMC	1 cut(s)	488
BseXI	GCAGC	4 cut(s)	215, 218, 552, 828
Bsh1236I	CGCG	1 cut(s)	994
BshFI	GGCC	4 cut(s)	321, 486, 600, 943
BshNI	GGYRCC	1 cut(s)	560
BsiHKAI	GWGCWC	1 cut(s)	25
BsiHKCI	CYCGRG	2 cut(s)	34, 393
BsiSI	CCGG	2 cut(s)	926, 989
BslFI	GGGAC	2 cut(s)	706, 807
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	2 cut(s)	226, 984
BsmFI	GGGAC	2 cut(s)	706, 807
BsnI	GGCC	4 cut(s)	321, 486, 600, 943
Bso31I	GGTCTC	2 cut(s)	226, 984
BsoBI	CYCGRG	2 cut(s)	34, 393
Bsp120I	GGGCCC	1 cut(s)	484
Bsp1286I	GDGCHC	2 cut(s)	25, 488
Bsp143I	GATC	9 cut(s)	499, 634, 785, 884, 896, 908, 947, 953, 965
Bsp19I	CCATGG	1 cut(s)	469
BspACI	CCGC	4 cut(s)	322, 488, 985, 994
BspANI	GGCC	4 cut(s)	321, 486, 600, 943
BspCNI	CTCAG	2 cut(s)	287, 661
BspFNI	CGCG	1 cut(s)	994
BspHI	TCATGA	1 cut(s)	754
BspLI	GGNNCC	4 cut(s)	348, 485, 486, 562
BspPI	GGATC	1 cut(s)	642
BspT107I	GGYRCC	1 cut(s)	560
BspTNI	GGTCTC	2 cut(s)	226, 984
BsrDI	GCAATG	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	2 cut(s)	469, 776
BssMI	GATC	9 cut(s)	499, 634, 785, 884, 896, 908, 947, 953, 965
BssT1I	CCWWGG	2 cut(s)	469, 776
Bst2UI	CCWGG	1 cut(s)	940
Bst4CI	ACNGT	1 cut(s)	686
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstC8I	GCNNGC	3 cut(s)	160, 465, 488
BstDEI	CTNAG	2 cut(s)	274, 669
BstDSI	CCRYGG	1 cut(s)	469
BstF5I	GGATG	1 cut(s)	403
BstFNI	CGCG	1 cut(s)	994
BstHHI	GCGC	1 cut(s)	994
BstKTI	GATC	9 cut(s)	502, 637, 788, 887, 899, 911, 950, 956, 968
BstMAI	GTCTC	2 cut(s)	226, 984
BstMBI	GATC	9 cut(s)	499, 634, 785, 884, 896, 908, 947, 953, 965
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 363, 407, 537
BstNI	CCWGG	1 cut(s)	940
BstNSI	RCATGY	1 cut(s)	162
BstSCI	CCNGG	2 cut(s)	938, 987
BstSFI	CTRYAG	1 cut(s)	367
BstSLI	GKGCMC	1 cut(s)	488
BstUI	CGCG	1 cut(s)	994
BstV1I	GCAGC	4 cut(s)	215, 218, 552, 828
BstX2I	RGATCY	2 cut(s)	785, 908
BstXI	CCANNNNNNTGG	1 cut(s)	217
BstYI	RGATCY	2 cut(s)	785, 908
BsuRI	GGCC	4 cut(s)	321, 486, 600, 943
BtgI	CCRYGG	1 cut(s)	469
BtrI	CACGTC	1 cut(s)	569
BtsCI	GGATG	1 cut(s)	403
BtsI	GCAGTG	1 cut(s)	550
BtsIMutI	CAGTG	2 cut(s)	550, 691
Cac8I	GCNNGC	3 cut(s)	160, 465, 488
CciI	TCATGA	1 cut(s)	754
CfoI	GCGC	1 cut(s)	994
Cfr13I	GGNCC	2 cut(s)	484, 485
Csp6I	GTAC	2 cut(s)	106, 430
CviAII	CATG	7 cut(s)	109, 159, 172, 363, 470, 730, 755
CviQI	GTAC	2 cut(s)	106, 430
DdeI	CTNAG	2 cut(s)	274, 669
DpnI	GATC	9 cut(s)	501, 636, 787, 886, 898, 910, 949, 955, 967
DpnII	GATC	9 cut(s)	499, 634, 785, 884, 896, 908, 947, 953, 965
DraI	TTTAAA	1 cut(s)	769
DraIII	CACNNNGTG	1 cut(s)	497
EaeI	YGGCCR	1 cut(s)	319
Eco130I	CCWWGG	2 cut(s)	469, 776
Eco24I	GRGCYC	1 cut(s)	488
Eco31I	GGTCTC	2 cut(s)	226, 984
Eco88I	CYCGRG	2 cut(s)	34, 393
EcoO109I	RGGNCCY	1 cut(s)	484
EcoRII	CCWGG	1 cut(s)	938
EcoT14I	CCWWGG	2 cut(s)	469, 776
EcoT38I	GRGCYC	1 cut(s)	488
ErhI	CCWWGG	2 cut(s)	469, 776
FaeI	CATG	7 cut(s)	112, 162, 175, 366, 473, 733, 758
FaqI	GGGAC	2 cut(s)	706, 807
FatI	CATG	7 cut(s)	108, 158, 171, 362, 469, 729, 754
FauI	CCCGC	2 cut(s)	495, 992
FauNDI	CATATG	1 cut(s)	639
Fnu4HI	GCNGC	5 cut(s)	204, 207, 322, 541, 817
FokI	GGATG	1 cut(s)	410
FriOI	GRGCYC	1 cut(s)	488
Fsp4HI	GCNGC	5 cut(s)	204, 207, 322, 541, 817
FspBI	CTAG	5 cut(s)	135, 495, 828, 894, 912
GlaI	GCGC	1 cut(s)	993
GluI	GCNGC	5 cut(s)	204, 207, 322, 541, 817
HaeIII	GGCC	4 cut(s)	321, 486, 600, 943
HapII	CCGG	2 cut(s)	926, 989
HhaI	GCGC	1 cut(s)	994
Hin1II	CATG	7 cut(s)	112, 162, 175, 366, 473, 733, 758
Hin6I	GCGC	1 cut(s)	992
HinP1I	GCGC	1 cut(s)	992
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HinfI	GANTC	1 cut(s)	832
HpaII	CCGG	2 cut(s)	926, 989
HphI	GGTGA	2 cut(s)	22, 665
Hpy166II	GTNNAC	2 cut(s)	99, 236
Hpy188I	TCNGA	4 cut(s)	277, 577, 837, 1000
Hpy188III	TCNNGA	9 cut(s)	395, 422, 680, 746, 755, 894, 906, 951, 963
Hpy8I	GTNNAC	2 cut(s)	99, 236
Hpy99I	CGWCG	1 cut(s)	507
HpyAV	CCTTC	6 cut(s)	337, 615, 625, 683, 852, 945
HpyCH4III	ACNGT	1 cut(s)	686
HpyCH4IV	ACGT	1 cut(s)	568
HpyCH4V	TGCA	7 cut(s)	158, 162, 192, 203, 401, 410, 920
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 363, 407, 537
HpyF3I	CTNAG	2 cut(s)	274, 669
HpySE526I	ACGT	1 cut(s)	568
Hsp92II	CATG	7 cut(s)	112, 162, 175, 366, 473, 733, 758
HspAI	GCGC	1 cut(s)	992
Kzo9I	GATC	9 cut(s)	499, 634, 785, 884, 896, 908, 947, 953, 965
LmnI	GCTCC	5 cut(s)	11, 20, 837, 867, 880
LpnPI	CCDG	8 cut(s)	108, 636, 731, 925, 939, 952, 960, 1002
Lsp1109I	GCAGC	4 cut(s)	215, 218, 552, 828
LweI	GCATC	3 cut(s)	388, 397, 929
MaeI	CTAG	5 cut(s)	135, 495, 828, 894, 912
MaeII	ACGT	1 cut(s)	568
MaeIII	GTNAC	1 cut(s)	680
MalI	GATC	9 cut(s)	501, 636, 787, 886, 898, 910, 949, 955, 967
MboI	GATC	9 cut(s)	499, 634, 785, 884, 896, 908, 947, 953, 965
MboII	GAAGA	4 cut(s)	124, 311, 416, 600
MflI	RGATCY	2 cut(s)	785, 908
MhlI	GDGCHC	2 cut(s)	25, 488
MluCI	AATT	9 cut(s)	150, 175, 197, 338, 411, 578, 718, 764, 871
MlyI	GAGTC	1 cut(s)	841
MmeI	TCCRAC	1 cut(s)	815
MroXI	GAANNNNTTC	1 cut(s)	179
MseI	TTAA	3 cut(s)	452, 768, 801
MspI	CCGG	2 cut(s)	926, 989
MspR9I	CCNGG	2 cut(s)	940, 989
MvaI	CCWGG	1 cut(s)	940
MvnI	CGCG	1 cut(s)	994
MwoI	GCNNNNNNNGC	4 cut(s)	20, 363, 407, 537
NciI	CCSGG	1 cut(s)	989
NcoI	CCATGG	1 cut(s)	469
NdeI	CATATG	1 cut(s)	639
NdeII	GATC	9 cut(s)	499, 634, 785, 884, 896, 908, 947, 953, 965
NlaIII	CATG	7 cut(s)	112, 162, 175, 366, 473, 733, 758
NlaIV	GGNNCC	4 cut(s)	348, 485, 486, 562
NmuCI	GTSAC	1 cut(s)	680
NspI	RCATGY	1 cut(s)	162
PaeI	GCATGC	1 cut(s)	162
PaeR7I	CTCGAG	1 cut(s)	34
PagI	TCATGA	1 cut(s)	754
PdmI	GAANNNNTTC	1 cut(s)	179
PkrI	GCNGC	5 cut(s)	205, 208, 323, 542, 818
PleI	GAGTC	1 cut(s)	840
PpsI	GAGTC	1 cut(s)	840
PsiI	TTATAA	1 cut(s)	714
Psp6I	CCWGG	1 cut(s)	938
PspGI	CCWGG	1 cut(s)	938
PspN4I	GGNNCC	4 cut(s)	348, 485, 486, 562
PspOMI	GGGCCC	1 cut(s)	484
PspPI	GGNCC	2 cut(s)	484, 485
PspXI	VCTCGAGB	1 cut(s)	34
PsuI	RGATCY	2 cut(s)	785, 908
RsaI	GTAC	2 cut(s)	107, 431
RsaNI	GTAC	2 cut(s)	106, 430
SaqAI	TTAA	3 cut(s)	452, 768, 801
SatI	GCNGC	5 cut(s)	204, 207, 322, 541, 817
Sau3AI	GATC	9 cut(s)	499, 634, 785, 884, 896, 908, 947, 953, 965
Sau96I	GGNCC	2 cut(s)	484, 485
SchI	GAGTC	1 cut(s)	841
ScrFI	CCNGG	2 cut(s)	940, 989
SduI	GDGCHC	2 cut(s)	25, 488
SfaNI	GCATC	3 cut(s)	388, 397, 929
SfcI	CTRYAG	1 cut(s)	367
Sfr274I	CTCGAG	1 cut(s)	34
SlaI	CTCGAG	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
SphI	GCATGC	1 cut(s)	162
Sse9I	AATT	9 cut(s)	150, 175, 197, 338, 411, 578, 718, 764, 871
SsiI	CCGC	4 cut(s)	322, 488, 985, 994
SspI	AATATT	1 cut(s)	166
SspMI	CTAG	5 cut(s)	135, 495, 828, 894, 912
StyD4I	CCNGG	2 cut(s)	938, 987
StyI	CCWWGG	2 cut(s)	469, 776
TaaI	ACNGT	1 cut(s)	686
TaiI	ACGT	1 cut(s)	571
TaqI	TCGA	5 cut(s)	35, 553, 583, 962, 968
TasI	AATT	9 cut(s)	150, 175, 197, 338, 411, 578, 718, 764, 871
TatI	WGTACW	1 cut(s)	105
TauI	GCSGC	1 cut(s)	324
Tru1I	TTAA	3 cut(s)	452, 768, 801
Tru9I	TTAA	3 cut(s)	452, 768, 801
TscAI	CASTG	2 cut(s)	550, 691
TseFI	GTSAC	1 cut(s)	680
TseI	GCWGC	4 cut(s)	203, 206, 540, 816
Tsp45I	GTSAC	1 cut(s)	680
TspDTI	ATGAA	6 cut(s)	49, 125, 188, 743, 746, 825
TspRI	CASTG	2 cut(s)	550, 691
XapI	RAATTY	3 cut(s)	197, 578, 764
XbaI	TCTAGA	1 cut(s)	893
XceI	RCATGY	1 cut(s)	162
XhoI	CTCGAG	1 cut(s)	34
XmnI	GAANNNNTTC	1 cut(s)	179
XspI	CTAG	5 cut(s)	135, 495, 828, 894, 912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.