Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004906

Physical Location & Seq

Genomic Coordinates Forward (+)

26900805 .. 26903709

Gene Structure 2905 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g27080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGAGTGGTCGATTTTCTCGCACAATCTATGTTGGCAACCTTCCCTCAGATATAAAAGAATGGGAGGTTGAAGATCTATTCTACAAGTATGGCCGCATAGTGGATATTGAACTGAAGATTCCACCACGTCCTCCATGTTTTTCGTTTGTTGAGTTTGAAAGTTCTCGGGATGCAGAAGATGCAATAAGAGGGCGTGATGGGTATAACTTTGATGGTTGCCGTTTAAGGGTTGAACTTGCCCATGGGGGTAGGGGACCATCTTCAAGTGATCGTCGTAGTGGATATGACCGAGGCAGTGGTGGGGGTCGGTTTGGCGTTTCACGTCATTCTGAGTATCGAGTTATTGTTCGTAATCTCCCTTCTTCTGCCTCTTGGCAAGACTTGAAGGTGATCGATATGCGTAGAGCTGGTGATGTGTGTTTTGCTGAGGTTTCTCGTGACAGTGAAGGGACTTATGGCTTAGTTGATTATACCAATTCTGATGACATGAAATATGCTATCCGGAAGCTTGATGACACTGAATTTAAAAATCCTTGGGCAAGAACTCATATTCGGGTTAAATATTACGATAGGAGCCCCTCAAGGAGCCGCAGTAGAAGTCGTAGCAGAAGCCGGAGTGTAAGAAGGGATCGGAGCAAGTCGTTGGAGCGATCTGTATCAAAATCGGTATCAAGATCAGTATCAAGATCTAGGTCTCCATCTCCTGTTAAATCTTCCAGGCCAAGATCAATATCAAGGTCAAGGTCAAGGTCAAGGTCAGAATCACCTCGTCCTGCGCGGTTGGGTAGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

265

Amino Acids

30.17

Weight (kDa)

10.5

Isoelectric Point (pI)

85.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 76	6e-17	RNA recognition motif
RRM_1	PF00076	114 - 177	3.2e-08	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430
fragaria_vesca	FvH4_7g32850 FvH4_7g32850
malus_domestica	MD01G1227800.v1.1 MD01G1227900.v1.1 MD07G1298400.v1.1
prunus_persica	Prupe.2G318200_v2.0.a1
pyrus_communis	pycom01g23610 pycom07g27080
rosa_chinensis	RchiOBHm_Chr1g0382791
rosa_laevigata	RLG00000026159
rosa_multiflora	Rmu_sc0002242.1_g000001 Rmu_sc0003389.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277900
rosa_rugosa	Rorug01G0435900.1 Rorug01G0436000 Rorug01G0436100 Rorug01G0436200 Rorug01G0436300
rosa_samantha	Rh1AG461200 Rh1BG417900 Rh1CG431700 Rh1DG450100
rosa_wichuraiana	Rw1G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	778
AccIII	TCCGGA	1 cut(s)	501
AciI	CCGC	3 cut(s)	94, 589, 778
AclWI	GGATC	1 cut(s)	636
AcoI	YGGCCR	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	521
AcuI	CTGAAG	1 cut(s)	134
AfiI	CCNNNNNNNGG	2 cut(s)	100, 226
AgsI	TTSAA	6 cut(s)	71, 110, 158, 233, 264, 385
AjiI	CACGTC	2 cut(s)	128, 323
AjnI	CCWGG	1 cut(s)	716
AluBI	AGCT	2 cut(s)	407, 508
AluI	AGCT	2 cut(s)	407, 508
Alw26I	GTCTC	1 cut(s)	699
AlwI	GGATC	1 cut(s)	636
Ama87I	CYCGRG	1 cut(s)	165
Aor13HI	TCCGGA	1 cut(s)	501
AoxI	GGCC	2 cut(s)	91, 719
ApoI	RAATTY	1 cut(s)	521
AspLEI	GCGC	1 cut(s)	778
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	3 cut(s)	400, 422, 756
AvaI	CYCGRG	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	578
BarI	GAAGNNNNNNTAC	2 cut(s)	343, 375
BauI	CACGAG	1 cut(s)	435
BbvCI	CCTCAGC	1 cut(s)	426
BccI	CCATC	4 cut(s)	191, 206, 265, 706
BceAI	ACGGC	1 cut(s)	204
BciT130I	CCWGG	1 cut(s)	718
BcoDI	GTCTC	1 cut(s)	699
BfaI	CTAG	1 cut(s)	690
BglII	AGATCT	2 cut(s)	73, 686
BisI	GCNGC	2 cut(s)	94, 589
BlsI	GCNGC	2 cut(s)	95, 590
Bme1390I	CCNGG	1 cut(s)	718
Bme18I	GGWCC	1 cut(s)	254
BmeT110I	CYCGRG	1 cut(s)	165
BmgBI	CACGTC	2 cut(s)	128, 323
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	3 cut(s)	255, 575, 587
BmrFI	CCNGG	1 cut(s)	718
BmsI	GCATC	2 cut(s)	160, 169
Bpu10I	CCTNAGC	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	565
Bsa29I	ATCGAT	1 cut(s)	393
BsaBI	GATNNNNATC	3 cut(s)	655, 679, 730
BsaI	GGTCTC	1 cut(s)	699
BsaJI	CCNNGG	3 cut(s)	241, 289, 533
BsaWI	WCCGGW	1 cut(s)	501
BsaXI	ACNNNNNCTCC	2 cut(s)	577, 607
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 226
Bse8I	GATNNNNATC	3 cut(s)	655, 679, 730
BseAI	TCCGGA	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	718
BseCI	ATCGAT	1 cut(s)	393
BseDI	CCNNGG	3 cut(s)	241, 289, 533
BseGI	GGATG	1 cut(s)	175
BseJI	GATNNNNATC	3 cut(s)	655, 679, 730
BseLI	CCNNNNNNNGG	2 cut(s)	100, 226
BseMII	CTCAG	3 cut(s)	60, 321, 417
Bsh1236I	CGCG	1 cut(s)	778
BshFI	GGCC	2 cut(s)	93, 721
BshVI	ATCGAT	1 cut(s)	393
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	2 cut(s)	502, 613
BslFI	GGGAC	2 cut(s)	267, 463
BslI	CCNNNNNNNGG	2 cut(s)	100, 226
BsmAI	GTCTC	1 cut(s)	699
BsmFI	GGGAC	2 cut(s)	267, 463
BsnI	GGCC	2 cut(s)	93, 721
Bso31I	GGTCTC	1 cut(s)	699
BsoBI	CYCGRG	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	578
Bsp13I	TCCGGA	1 cut(s)	501
Bsp143I	GATC	8 cut(s)	73, 268, 390, 628, 650, 674, 686, 725
Bsp19I	CCATGG	1 cut(s)	241
BspACI	CCGC	3 cut(s)	94, 589, 778
BspANI	GGCC	2 cut(s)	93, 721
BspCNI	CTCAG	3 cut(s)	59, 322, 418
BspDI	ATCGAT	1 cut(s)	393
BspEI	TCCGGA	1 cut(s)	501
BspFNI	CGCG	1 cut(s)	778
BspLI	GGNNCC	3 cut(s)	255, 575, 587
BspPI	GGATC	1 cut(s)	636
BspTNI	GGTCTC	1 cut(s)	699
BssECI	CCNNGG	3 cut(s)	241, 289, 533
BssMI	GATC	8 cut(s)	73, 268, 390, 628, 650, 674, 686, 725
BssSI	CACGAG	1 cut(s)	435
BssT1I	CCWWGG	2 cut(s)	241, 533
Bst2BI	CACGAG	1 cut(s)	435
Bst2UI	CCWGG	1 cut(s)	718
Bst4CI	ACNGT	1 cut(s)	443
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstDEI	CTNAG	4 cut(s)	46, 330, 426, 460
BstDSI	CCRYGG	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	778
BstHHI	GCGC	1 cut(s)	778
BstKTI	GATC	8 cut(s)	76, 271, 393, 631, 653, 677, 689, 728
BstMAI	GTCTC	1 cut(s)	699
BstMBI	GATC	8 cut(s)	73, 268, 390, 628, 650, 674, 686, 725
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	1 cut(s)	718
BstSCI	CCNGG	1 cut(s)	716
BstUI	CGCG	1 cut(s)	778
BstX2I	RGATCY	2 cut(s)	73, 686
BstYI	RGATCY	2 cut(s)	73, 686
Bsu15I	ATCGAT	1 cut(s)	393
BsuRI	GGCC	2 cut(s)	93, 721
BsuTUI	ATCGAT	1 cut(s)	393
BtgI	CCRYGG	1 cut(s)	241
BtrI	CACGTC	2 cut(s)	128, 323
BtsCI	GGATG	1 cut(s)	175
BtsI	GCAGTG	1 cut(s)	301
BtsIMutI	CAGTG	3 cut(s)	301, 448, 516
CfoI	GCGC	1 cut(s)	778
Cfr13I	GGNCC	1 cut(s)	254
ClaI	ATCGAT	1 cut(s)	393
CviAII	CATG	3 cut(s)	135, 242, 487
CviJI	RGCY	8 cut(s)	93, 407, 459, 508, 576, 588, 612, 721
CviKI_1	RGCY	8 cut(s)	93, 407, 459, 508, 576, 588, 612, 721
DdeI	CTNAG	4 cut(s)	46, 330, 426, 460
DpnI	GATC	8 cut(s)	75, 270, 392, 630, 652, 676, 688, 727
DpnII	GATC	8 cut(s)	73, 268, 390, 628, 650, 674, 686, 725
DraI	TTTAAA	1 cut(s)	526
EaeI	YGGCCR	1 cut(s)	91
Eco130I	CCWWGG	2 cut(s)	241, 533
Eco24I	GRGCYC	1 cut(s)	578
Eco31I	GGTCTC	1 cut(s)	699
Eco47I	GGWCC	1 cut(s)	254
Eco57I	CTGAAG	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	716
EcoT14I	CCWWGG	2 cut(s)	241, 533
EcoT38I	GRGCYC	1 cut(s)	578
ErhI	CCWWGG	2 cut(s)	241, 533
FaeI	CATG	3 cut(s)	138, 245, 490
FaqI	GGGAC	2 cut(s)	267, 463
FatI	CATG	3 cut(s)	134, 241, 486
Fnu4HI	GCNGC	2 cut(s)	94, 589
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	578
Fsp4HI	GCNGC	2 cut(s)	94, 589
FspBI	CTAG	1 cut(s)	690
GlaI	GCGC	1 cut(s)	777
GluI	GCNGC	2 cut(s)	94, 589
HaeIII	GGCC	2 cut(s)	93, 721
HapII	CCGG	2 cut(s)	502, 613
HhaI	GCGC	1 cut(s)	778
Hin1II	CATG	3 cut(s)	138, 245, 490
Hin6I	GCGC	1 cut(s)	776
HinP1I	GCGC	1 cut(s)	776
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	2 cut(s)	118, 761
HpaII	CCGG	2 cut(s)	502, 613
HphI	GGTGA	3 cut(s)	400, 422, 756
Hpy188I	TCNGA	5 cut(s)	49, 331, 481, 633, 760
Hpy188III	TCNNGA	5 cut(s)	167, 437, 502, 672, 684
Hpy99I	CGWCG	1 cut(s)	276
HpyAV	CCTTC	5 cut(s)	50, 369, 379, 440, 618
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4IV	ACGT	2 cut(s)	127, 322
HpyCH4V	TGCA	2 cut(s)	173, 182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	4 cut(s)	46, 330, 426, 460
HpySE526I	ACGT	2 cut(s)	127, 322
Hsp92II	CATG	3 cut(s)	138, 245, 490
HspAI	GCGC	1 cut(s)	776
Kpn2I	TCCGGA	1 cut(s)	501
Kzo9I	GATC	8 cut(s)	73, 268, 390, 628, 650, 674, 686, 725
LmnI	GCTCC	4 cut(s)	573, 585, 633, 646
LpnPI	CCDG	7 cut(s)	393, 515, 626, 703, 717, 730, 786
LweI	GCATC	2 cut(s)	160, 169
MaeI	CTAG	1 cut(s)	690
MaeII	ACGT	2 cut(s)	127, 322
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	8 cut(s)	75, 270, 392, 630, 652, 676, 688, 727
MboI	GATC	8 cut(s)	73, 268, 390, 628, 650, 674, 686, 725
MboII	GAAGA	6 cut(s)	83, 127, 188, 252, 354, 705
MflI	RGATCY	2 cut(s)	73, 686
MhlI	GDGCHC	1 cut(s)	578
MluCI	AATT	2 cut(s)	475, 521
MmeI	TCCRAC	1 cut(s)	624
MnlI	CCTC	9 cut(s)	55, 58, 141, 182, 284, 379, 421, 589, 777
MroI	TCCGGA	1 cut(s)	501
MseI	TTAA	4 cut(s)	224, 525, 558, 708
MspI	CCGG	2 cut(s)	502, 613
MspR9I	CCNGG	1 cut(s)	718
MvaI	CCWGG	1 cut(s)	718
MvnI	CGCG	1 cut(s)	778
MwoI	GCNNNNNNNGC	1 cut(s)	179
NcoI	CCATGG	1 cut(s)	241
NdeII	GATC	8 cut(s)	73, 268, 390, 628, 650, 674, 686, 725
NlaIII	CATG	3 cut(s)	138, 245, 490
NlaIV	GGNNCC	3 cut(s)	255, 575, 587
NmuCI	GTSAC	1 cut(s)	437
PfeI	GAWTC	2 cut(s)	118, 761
PkrI	GCNGC	2 cut(s)	95, 590
Psp6I	CCWGG	1 cut(s)	716
PspGI	CCWGG	1 cut(s)	716
PspN4I	GGNNCC	3 cut(s)	255, 575, 587
PspPI	GGNCC	1 cut(s)	254
PsuI	RGATCY	2 cut(s)	73, 686
SaqAI	TTAA	4 cut(s)	224, 525, 558, 708
SatI	GCNGC	2 cut(s)	94, 589
Sau3AI	GATC	8 cut(s)	73, 268, 390, 628, 650, 674, 686, 725
Sau96I	GGNCC	1 cut(s)	254
ScrFI	CCNGG	1 cut(s)	718
SduI	GDGCHC	1 cut(s)	578
SfaNI	GCATC	2 cut(s)	160, 169
SinI	GGWCC	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	580
SmoI	CTYRAG	1 cut(s)	580
Sse9I	AATT	2 cut(s)	475, 521
SsiI	CCGC	3 cut(s)	94, 589, 778
SspI	AATATT	1 cut(s)	563
SspMI	CTAG	1 cut(s)	690
StyD4I	CCNGG	1 cut(s)	716
StyI	CCWWGG	2 cut(s)	241, 533
TaaI	ACNGT	1 cut(s)	443
TaiI	ACGT	2 cut(s)	130, 325
TaqI	TCGA	3 cut(s)	10, 337, 393
TaqII	GACCGA	1 cut(s)	303
TasI	AATT	2 cut(s)	475, 521
TauI	GCSGC	2 cut(s)	96, 591
TfiI	GAWTC	2 cut(s)	118, 761
Tru1I	TTAA	4 cut(s)	224, 525, 558, 708
Tru9I	TTAA	4 cut(s)	224, 525, 558, 708
TscAI	CASTG	3 cut(s)	301, 448, 523
TseFI	GTSAC	1 cut(s)	437
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	1 cut(s)	503
TspRI	CASTG	3 cut(s)	301, 448, 523
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	1 cut(s)	521
XspI	CTAG	1 cut(s)	690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.