Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004906

Physical Location & Seq

Genomic Coordinates Reverse (-)

68063314 .. 68068145

Gene Structure 4832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G041050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTGGCAACCTACCCTCAGATATAAGGAACGGGAGGTTGAAGATTTATTCTACAAGTATGGCCGCATTTTGGATATTGAATTGAAGGTTCCACCTCGCCCTCCATGCTATAGTTTTGTTGAGTTTGAGAGTTCACGGGATGCAGAAGATGCAATTAGGGGTCGTGATGGGTACAACTTTGATGGCTGTCGTTTAAGGGTTGAGCTTGCCCATGGTGGTAGTAGGGGCCCGCCACCTAGTGATCGTCGTGGTGGATATGGTGGAGGCAGTAGCAGAGGAGGCAGCAGTGGGGGTCGATTTGGTGTCTCACGTCATTCTGAATTTCGAGTTATTGTTCGTGGCCTCCCTTCTTCTGCTTCATGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTGTGTTTTGCCGAGGTTTGTCGTGACAGTGAAGGGACTTATGGCTTGGTTGATTATAACAATTATGATGACATGAAATATGCTGTTCGGGAACTTCATGATACTGAATTTAAAAATCCTTGGGCAAGATCTTATATTCGGGTTAAAGTGTATGAAAGCAGCAGTCCCTCTAGGAGTCGGAGCAGAAGCCGTAGCAGAAGCCGTAGTGTAAGAAGGAATAAGAGCAATTCTTTGGAGCGATCTGTTTCTAGATCAGTTTCAAGATCTAGGTCTGCCTCTCCGGTCAAACCTTCCAGGCCAAGATCAATGTCAAGATCAAGGTCAGGGTCTCCCCGCCCGGCGCGGTCAGATAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

252

Amino Acids

28.58

Weight (kDa)

10.21

Isoelectric Point (pI)

84.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	8 - 66	1.1e-11	RNA recognition motif
RRM_1	PF00076	110 - 172	1.1e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430
fragaria_vesca	FvH4_7g32850 FvH4_7g32850
malus_domestica	MD01G1227800.v1.1 MD01G1227900.v1.1 MD07G1298400.v1.1
prunus_persica	Prupe.2G318200_v2.0.a1
pyrus_communis	pycom01g23610 pycom07g27080
rosa_chinensis	RchiOBHm_Chr1g0382791
rosa_laevigata	RLG00000026159
rosa_multiflora	Rmu_sc0002242.1_g000001 Rmu_sc0003389.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277900
rosa_rugosa	Rorug01G0435900.1 Rorug01G0436000 Rorug01G0436100 Rorug01G0436200 Rorug01G0436300
rosa_samantha	Rh1AG461200 Rh1BG417900 Rh1CG431700 Rh1DG450100
rosa_wichuraiana	Rw1G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	456
AccII	CGCG	1 cut(s)	742
AciI	CCGC	4 cut(s)	64, 230, 733, 742
AclWI	GGATC	1 cut(s)	384
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	2 cut(s)	320, 506
AdeI	CACNNNGTG	1 cut(s)	239
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	70
AgsI	TTSAA	5 cut(s)	41, 80, 85, 373, 660
AjiI	CACGTC	1 cut(s)	311
AjnI	CCWGG	1 cut(s)	692
AluBI	AGCT	2 cut(s)	205, 392
AluI	AGCT	2 cut(s)	205, 392
Alw26I	GTCTC	2 cut(s)	310, 732
AlwI	GGATC	1 cut(s)	384
AoxI	GGCC	4 cut(s)	61, 226, 340, 695
ApaI	GGGCCC	1 cut(s)	230
ApeKI	GCWGC	2 cut(s)	282, 558
ApoI	RAATTY	2 cut(s)	320, 506
AspLEI	GCGC	1 cut(s)	742
AspS9I	GGNCC	2 cut(s)	226, 227
AsuC2I	CCSGG	1 cut(s)	737
AsuHPI	GGTGA	1 cut(s)	407
BaeGI	GKGCMC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	294, 570
BccI	CCATC	2 cut(s)	161, 176
BceAI	ACGGC	2 cut(s)	573, 585
BciT130I	CCWGG	1 cut(s)	694
BcnI	CCSGG	1 cut(s)	737
BcoDI	GTCTC	2 cut(s)	310, 732
BfaI	CTAG	4 cut(s)	237, 570, 648, 666
BfmI	CTRYAG	1 cut(s)	109
BglII	AGATCT	2 cut(s)	527, 662
BisI	GCNGC	3 cut(s)	64, 283, 559
BlsI	GCNGC	3 cut(s)	65, 284, 560
Bme1390I	CCNGG	2 cut(s)	694, 737
BmgBI	CACGTC	1 cut(s)	311
BmgT120I	GGNCC	2 cut(s)	226, 227
BmiI	GGNNCC	3 cut(s)	90, 227, 228
BmrFI	CCNGG	2 cut(s)	694, 737
BmsI	GCATC	2 cut(s)	130, 139
BpuMI	CCSGG	1 cut(s)	737
BsaI	GGTCTC	1 cut(s)	732
BsaJI	CCNNGG	3 cut(s)	211, 411, 518
BsaWI	WCCGGW	1 cut(s)	679
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
BseBI	CCWGG	1 cut(s)	694
BseDI	CCNNGG	3 cut(s)	211, 411, 518
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMII	CTCAG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	291
BseSI	GKGCMC	1 cut(s)	230
BseXI	GCAGC	2 cut(s)	294, 570
Bsh1236I	CGCG	1 cut(s)	742
BshFI	GGCC	4 cut(s)	63, 228, 342, 697
BsiSI	CCGG	2 cut(s)	680, 737
BslFI	GGGAC	2 cut(s)	448, 549
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmAI	GTCTC	2 cut(s)	310, 732
BsmFI	GGGAC	2 cut(s)	448, 549
BsnI	GGCC	4 cut(s)	63, 228, 342, 697
Bso31I	GGTCTC	1 cut(s)	732
Bsp120I	GGGCCC	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	8 cut(s)	241, 376, 527, 638, 650, 662, 701, 713
Bsp19I	CCATGG	1 cut(s)	211
BspACI	CCGC	4 cut(s)	64, 230, 733, 742
BspANI	GGCC	4 cut(s)	63, 228, 342, 697
BspCNI	CTCAG	1 cut(s)	30
BspFNI	CGCG	1 cut(s)	742
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	3 cut(s)	90, 227, 228
BspPI	GGATC	1 cut(s)	384
BspTNI	GGTCTC	1 cut(s)	732
BssECI	CCNNGG	3 cut(s)	211, 411, 518
BssMI	GATC	8 cut(s)	241, 376, 527, 638, 650, 662, 701, 713
BssT1I	CCWWGG	2 cut(s)	211, 518
Bst2UI	CCWGG	1 cut(s)	694
Bst4CI	ACNGT	1 cut(s)	428
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	207, 230
BstDEI	CTNAG	1 cut(s)	17
BstDSI	CCRYGG	1 cut(s)	211
BstF5I	GGATG	1 cut(s)	145
BstFNI	CGCG	1 cut(s)	742
BstHHI	GCGC	1 cut(s)	742
BstKTI	GATC	8 cut(s)	244, 379, 530, 641, 653, 665, 704, 716
BstMAI	GTCTC	2 cut(s)	310, 732
BstMBI	GATC	8 cut(s)	241, 376, 527, 638, 650, 662, 701, 713
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 149, 279
BstNI	CCWGG	1 cut(s)	694
BstSCI	CCNGG	2 cut(s)	692, 735
BstSFI	CTRYAG	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	230
BstUI	CGCG	1 cut(s)	742
BstV1I	GCAGC	2 cut(s)	294, 570
BstX2I	RGATCY	2 cut(s)	527, 662
BstYI	RGATCY	2 cut(s)	527, 662
BsuRI	GGCC	4 cut(s)	63, 228, 342, 697
BtgI	CCRYGG	1 cut(s)	211
BtrI	CACGTC	1 cut(s)	311
BtsCI	GGATG	1 cut(s)	145
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	2 cut(s)	292, 433
Cac8I	GCNNGC	2 cut(s)	207, 230
CciI	TCATGA	1 cut(s)	496
CfoI	GCGC	1 cut(s)	742
Cfr13I	GGNCC	2 cut(s)	226, 227
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	5 cut(s)	105, 212, 360, 472, 497
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	1 cut(s)	17
DpnI	GATC	8 cut(s)	243, 378, 529, 640, 652, 664, 703, 715
DpnII	GATC	8 cut(s)	241, 376, 527, 638, 650, 662, 701, 713
DraI	TTTAAA	1 cut(s)	511
DraIII	CACNNNGTG	1 cut(s)	239
EaeI	YGGCCR	1 cut(s)	61
Eco130I	CCWWGG	2 cut(s)	211, 518
Eco24I	GRGCYC	1 cut(s)	230
Eco31I	GGTCTC	1 cut(s)	732
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	692
EcoT14I	CCWWGG	2 cut(s)	211, 518
EcoT38I	GRGCYC	1 cut(s)	230
ErhI	CCWWGG	2 cut(s)	211, 518
FaeI	CATG	5 cut(s)	108, 215, 363, 475, 500
FaqI	GGGAC	2 cut(s)	448, 549
FatI	CATG	5 cut(s)	104, 211, 359, 471, 496
FauI	CCCGC	2 cut(s)	237, 740
FauNDI	CATATG	1 cut(s)	381
Fnu4HI	GCNGC	3 cut(s)	64, 283, 559
FokI	GGATG	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	230
Fsp4HI	GCNGC	3 cut(s)	64, 283, 559
FspBI	CTAG	4 cut(s)	237, 570, 648, 666
GlaI	GCGC	1 cut(s)	741
GluI	GCNGC	3 cut(s)	64, 283, 559
HaeIII	GGCC	4 cut(s)	63, 228, 342, 697
HapII	CCGG	2 cut(s)	680, 737
HhaI	GCGC	1 cut(s)	742
Hin1II	CATG	5 cut(s)	108, 215, 363, 475, 500
Hin6I	GCGC	1 cut(s)	740
HinP1I	GCGC	1 cut(s)	740
HinfI	GANTC	1 cut(s)	574
HpaII	CCGG	2 cut(s)	680, 737
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188I	TCNGA	4 cut(s)	20, 319, 579, 748
Hpy188III	TCNNGA	7 cut(s)	164, 422, 488, 497, 648, 660, 711
Hpy8I	GTNNAC	1 cut(s)	134
Hpy99I	CGWCG	1 cut(s)	249
HpyAV	CCTTC	6 cut(s)	79, 357, 367, 425, 606, 699
HpyCH4III	ACNGT	1 cut(s)	428
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	2 cut(s)	143, 152
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 149, 279
HpyF3I	CTNAG	1 cut(s)	17
HpySE526I	ACGT	1 cut(s)	310
Hsp92II	CATG	5 cut(s)	108, 215, 363, 475, 500
HspAI	GCGC	1 cut(s)	740
Kzo9I	GATC	8 cut(s)	241, 376, 527, 638, 650, 662, 701, 713
LmnI	GCTCC	2 cut(s)	579, 634
LpnPI	CCDG	6 cut(s)	378, 679, 693, 706, 708, 750
Lsp1109I	GCAGC	2 cut(s)	294, 570
LweI	GCATC	2 cut(s)	130, 139
MaeI	CTAG	4 cut(s)	237, 570, 648, 666
MaeII	ACGT	1 cut(s)	310
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	8 cut(s)	243, 378, 529, 640, 652, 664, 703, 715
MboI	GATC	8 cut(s)	241, 376, 527, 638, 650, 662, 701, 713
MboII	GAAGA	3 cut(s)	53, 158, 342
MflI	RGATCY	2 cut(s)	527, 662
MhlI	GDGCHC	1 cut(s)	230
MluCI	AATT	6 cut(s)	80, 153, 320, 460, 506, 625
MlyI	GAGTC	1 cut(s)	583
MmeI	TCCRAC	1 cut(s)	557
MseI	TTAA	3 cut(s)	194, 510, 543
MspI	CCGG	2 cut(s)	680, 737
MspR9I	CCNGG	2 cut(s)	694, 737
MvaI	CCWGG	1 cut(s)	694
MvnI	CGCG	1 cut(s)	742
MwoI	GCNNNNNNNGC	3 cut(s)	105, 149, 279
NciI	CCSGG	1 cut(s)	737
NcoI	CCATGG	1 cut(s)	211
NdeI	CATATG	1 cut(s)	381
NdeII	GATC	8 cut(s)	241, 376, 527, 638, 650, 662, 701, 713
NlaIII	CATG	5 cut(s)	108, 215, 363, 475, 500
NlaIV	GGNNCC	3 cut(s)	90, 227, 228
NmeAIII	GCCGAG	1 cut(s)	436
NmuCI	GTSAC	1 cut(s)	422
PagI	TCATGA	1 cut(s)	496
PkrI	GCNGC	3 cut(s)	65, 284, 560
PleI	GAGTC	1 cut(s)	582
PpsI	GAGTC	1 cut(s)	582
PsiI	TTATAA	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	692
PspGI	CCWGG	1 cut(s)	692
PspN4I	GGNNCC	3 cut(s)	90, 227, 228
PspOMI	GGGCCC	1 cut(s)	226
PspPI	GGNCC	2 cut(s)	226, 227
PsuI	RGATCY	2 cut(s)	527, 662
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SaqAI	TTAA	3 cut(s)	194, 510, 543
SatI	GCNGC	3 cut(s)	64, 283, 559
Sau3AI	GATC	8 cut(s)	241, 376, 527, 638, 650, 662, 701, 713
Sau96I	GGNCC	2 cut(s)	226, 227
SchI	GAGTC	1 cut(s)	583
ScrFI	CCNGG	2 cut(s)	694, 737
SduI	GDGCHC	1 cut(s)	230
SfaNI	GCATC	2 cut(s)	130, 139
SfcI	CTRYAG	1 cut(s)	109
Sse9I	AATT	6 cut(s)	80, 153, 320, 460, 506, 625
SsiI	CCGC	4 cut(s)	64, 230, 733, 742
SspMI	CTAG	4 cut(s)	237, 570, 648, 666
StyD4I	CCNGG	2 cut(s)	692, 735
StyI	CCWWGG	2 cut(s)	211, 518
TaaI	ACNGT	1 cut(s)	428
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	2 cut(s)	295, 325
TasI	AATT	6 cut(s)	80, 153, 320, 460, 506, 625
TauI	GCSGC	1 cut(s)	66
Tru1I	TTAA	3 cut(s)	194, 510, 543
Tru9I	TTAA	3 cut(s)	194, 510, 543
TscAI	CASTG	2 cut(s)	292, 433
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	2 cut(s)	282, 558
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	4 cut(s)	348, 485, 488, 567
TspRI	CASTG	2 cut(s)	292, 433
XapI	RAATTY	2 cut(s)	320, 506
XbaI	TCTAGA	1 cut(s)	647
XspI	CTAG	4 cut(s)	237, 570, 648, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.