Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004906

Physical Location & Seq

Genomic Coordinates Forward (+)

67441253 .. 67446063

Gene Structure 4811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60573

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAAGATGATAACTGGACACCAAACTAGCAGATTTTTACAAATTGTTGGATGCAATATTCACATGAATTATTTCTTTGATTGCAGAAAATTTGCAGCAGCCAATCTTTTGGTCTCAAATATGAGTGGACGATTTTCTCGCACAATTTATGTCGGCAACCTACCCTCAGATATAAGAGAACGGGAGGTTGAAGATTTATTCTACAAGTATGGCCGCATTTTGGATATTGAATTGAAGGTTCCACCTCGCCCTCCATGCTATAGTTTTGTTGAGTTTGAGAGTTCTCGGGATGCAGAAGATGCAATTAGGGGTCGTGATGGGTACAACTTTGATGGCTGTCGTTTAAGGGTTGAGCTTGCCCATGGTGGTAGTAGGGGCCCGCCACCTAGTGATCGTCGTGGTGGATATGGTGGAGGCAGTAGCAGCAGAGGAGGCAGCAGTGGGGGTCGATTTGGTGTCTCACGTCATTCTGAATTTCGAGTTATTGTTCGTGGCCTCCCTTCTTCTGCTTCATGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTGTGTTTTGCCGAGGTTTGTCGTGACAGTGAAGGGACTTATGGCTTGGTTGATTATAACAATTATGATGACATGAAATATGCTGTTCGGGAACTTCATGATACTGAATTTAAAAATCCTTGGGCAAGATCTTATATTCGGGTTAAAGTGTATGAAAGCAGCAGTCCCTCTAGGAGTCGGAGCAGAAGCCGTAGCAGAAGCCGTAGTGTAAGAAGGAATAAGAGCAATTCTTTGGAGCGATCTGTTTCTAGATCAGTTTCAAGATCTAGGTCTGCATCTCCGGTCAAACCTTCCAGGCCAAGATCAATGTCAAGATCAAGGTCAGGGTCTCCCCGCCCGGCGCGGTCAGATAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

303

Amino Acids

34.22

Weight (kDa)

10.2

Isoelectric Point (pI)

78.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	49 - 116	1.9e-17	RNA recognition motif
RRM_1	PF00076	161 - 223	1.5e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430
fragaria_vesca	FvH4_7g32850 FvH4_7g32850
malus_domestica	MD01G1227800.v1.1 MD01G1227900.v1.1 MD07G1298400.v1.1
prunus_persica	Prupe.2G318200_v2.0.a1
pyrus_communis	pycom01g23610 pycom07g27080
rosa_chinensis	RchiOBHm_Chr1g0382791
rosa_laevigata	RLG00000026159
rosa_multiflora	Rmu_sc0002242.1_g000001 Rmu_sc0003389.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277900
rosa_rugosa	Rorug01G0435900.1 Rorug01G0436000 Rorug01G0436100 Rorug01G0436200 Rorug01G0436300
rosa_samantha	Rh1AG461200 Rh1BG417900 Rh1CG431700 Rh1DG450100
rosa_wichuraiana	Rw1G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	609
AccII	CGCG	1 cut(s)	895
AciI	CCGC	4 cut(s)	214, 380, 886, 895
AclWI	GGATC	1 cut(s)	537
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	3 cut(s)	89, 473, 659
AdeI	CACNNNGTG	1 cut(s)	389
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	220
AgsI	TTSAA	5 cut(s)	191, 230, 235, 526, 813
AjiI	CACGTC	1 cut(s)	464
AjnI	CCWGG	1 cut(s)	845
AluBI	AGCT	2 cut(s)	355, 545
AluI	AGCT	2 cut(s)	355, 545
Alw26I	GTCTC	3 cut(s)	118, 463, 885
AlwI	GGATC	1 cut(s)	537
Ama87I	CYCGRG	1 cut(s)	285
AoxI	GGCC	4 cut(s)	211, 376, 493, 848
ApaI	GGGCCC	1 cut(s)	380
ApeKI	GCWGC	5 cut(s)	95, 98, 423, 435, 711
ApoI	RAATTY	3 cut(s)	89, 473, 659
Asp700I	GAANNNNTTC	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	895
AspS9I	GGNCC	2 cut(s)	376, 377
AsuC2I	CCSGG	1 cut(s)	890
AsuHPI	GGTGA	1 cut(s)	560
AvaI	CYCGRG	1 cut(s)	285
BaeGI	GKGCMC	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	380
BbvI	GCAGC	5 cut(s)	107, 110, 435, 447, 723
BccI	CCATC	2 cut(s)	311, 326
BceAI	ACGGC	2 cut(s)	726, 738
BciT130I	CCWGG	1 cut(s)	847
BcnI	CCSGG	1 cut(s)	890
BcoDI	GTCTC	3 cut(s)	118, 463, 885
BfaI	CTAG	5 cut(s)	27, 387, 723, 801, 819
BfmI	CTRYAG	1 cut(s)	259
BglII	AGATCT	2 cut(s)	680, 815
BisI	GCNGC	6 cut(s)	96, 99, 214, 424, 436, 712
BlsI	GCNGC	6 cut(s)	97, 100, 215, 425, 437, 713
Bme1390I	CCNGG	2 cut(s)	847, 890
BmeT110I	CYCGRG	1 cut(s)	285
BmgBI	CACGTC	1 cut(s)	464
BmgT120I	GGNCC	2 cut(s)	376, 377
BmiI	GGNNCC	3 cut(s)	240, 377, 378
BmrFI	CCNGG	2 cut(s)	847, 890
BmsI	GCATC	4 cut(s)	41, 280, 289, 836
BpuMI	CCSGG	1 cut(s)	890
BsaI	GGTCTC	2 cut(s)	118, 885
BsaJI	CCNNGG	3 cut(s)	361, 564, 671
BsaWI	WCCGGW	1 cut(s)	832
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	847
BseDI	CCNNGG	3 cut(s)	361, 564, 671
BseGI	GGATG	2 cut(s)	56, 295
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	19
BseRI	GAGGAG	1 cut(s)	444
BseSI	GKGCMC	1 cut(s)	380
BseXI	GCAGC	5 cut(s)	107, 110, 435, 447, 723
Bsh1236I	CGCG	1 cut(s)	895
BshFI	GGCC	4 cut(s)	213, 378, 495, 850
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	2 cut(s)	833, 890
BslFI	GGGAC	2 cut(s)	601, 702
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmAI	GTCTC	3 cut(s)	118, 463, 885
BsmFI	GGGAC	2 cut(s)	601, 702
BsnI	GGCC	4 cut(s)	213, 378, 495, 850
Bso31I	GGTCTC	2 cut(s)	118, 885
BsoBI	CYCGRG	1 cut(s)	285
Bsp120I	GGGCCC	1 cut(s)	376
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp143I	GATC	8 cut(s)	391, 529, 680, 791, 803, 815, 854, 866
Bsp19I	CCATGG	1 cut(s)	361
BspACI	CCGC	4 cut(s)	214, 380, 886, 895
BspANI	GGCC	4 cut(s)	213, 378, 495, 850
BspCNI	CTCAG	1 cut(s)	179
BspFNI	CGCG	1 cut(s)	895
BspHI	TCATGA	1 cut(s)	649
BspLI	GGNNCC	3 cut(s)	240, 377, 378
BspPI	GGATC	1 cut(s)	537
BspTNI	GGTCTC	2 cut(s)	118, 885
BsrI	ACTGG	1 cut(s)	19
BssECI	CCNNGG	3 cut(s)	361, 564, 671
BssMI	GATC	8 cut(s)	391, 529, 680, 791, 803, 815, 854, 866
BssT1I	CCWWGG	2 cut(s)	361, 671
Bst2UI	CCWGG	1 cut(s)	847
Bst4CI	ACNGT	1 cut(s)	581
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstC8I	GCNNGC	2 cut(s)	357, 380
BstDEI	CTNAG	1 cut(s)	166
BstDSI	CCRYGG	1 cut(s)	361
BstF5I	GGATG	2 cut(s)	56, 295
BstFNI	CGCG	1 cut(s)	895
BstHHI	GCGC	1 cut(s)	895
BstKTI	GATC	8 cut(s)	394, 532, 683, 794, 806, 818, 857, 869
BstMAI	GTCTC	3 cut(s)	118, 463, 885
BstMBI	GATC	8 cut(s)	391, 529, 680, 791, 803, 815, 854, 866
BstMWI	GCNNNNNNNGC	4 cut(s)	255, 299, 423, 432
BstNI	CCWGG	1 cut(s)	847
BstSCI	CCNGG	2 cut(s)	845, 888
BstSFI	CTRYAG	1 cut(s)	259
BstSLI	GKGCMC	1 cut(s)	380
BstUI	CGCG	1 cut(s)	895
BstV1I	GCAGC	5 cut(s)	107, 110, 435, 447, 723
BstX2I	RGATCY	2 cut(s)	680, 815
BstXI	CCANNNNNNTGG	1 cut(s)	109
BstYI	RGATCY	2 cut(s)	680, 815
BsuRI	GGCC	4 cut(s)	213, 378, 495, 850
BtgI	CCRYGG	1 cut(s)	361
BtrI	CACGTC	1 cut(s)	464
BtsCI	GGATG	2 cut(s)	56, 295
BtsI	GCAGTG	1 cut(s)	445
BtsIMutI	CAGTG	2 cut(s)	445, 586
Cac8I	GCNNGC	2 cut(s)	357, 380
CciI	TCATGA	1 cut(s)	649
CfoI	GCGC	1 cut(s)	895
Cfr13I	GGNCC	2 cut(s)	376, 377
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	6 cut(s)	64, 255, 362, 513, 625, 650
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	1 cut(s)	166
DpnI	GATC	8 cut(s)	393, 531, 682, 793, 805, 817, 856, 868
DpnII	GATC	8 cut(s)	391, 529, 680, 791, 803, 815, 854, 866
DraI	TTTAAA	1 cut(s)	664
DraIII	CACNNNGTG	1 cut(s)	389
EaeI	YGGCCR	1 cut(s)	211
Eco130I	CCWWGG	2 cut(s)	361, 671
Eco24I	GRGCYC	1 cut(s)	380
Eco31I	GGTCTC	2 cut(s)	118, 885
Eco88I	CYCGRG	1 cut(s)	285
EcoO109I	RGGNCCY	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	845
EcoT14I	CCWWGG	2 cut(s)	361, 671
EcoT38I	GRGCYC	1 cut(s)	380
ErhI	CCWWGG	2 cut(s)	361, 671
FaeI	CATG	6 cut(s)	67, 258, 365, 516, 628, 653
FaqI	GGGAC	2 cut(s)	601, 702
FatI	CATG	6 cut(s)	63, 254, 361, 512, 624, 649
FauI	CCCGC	2 cut(s)	387, 893
FauNDI	CATATG	1 cut(s)	534
Fnu4HI	GCNGC	6 cut(s)	96, 99, 214, 424, 436, 712
FokI	GGATG	2 cut(s)	63, 302
FriOI	GRGCYC	1 cut(s)	380
Fsp4HI	GCNGC	6 cut(s)	96, 99, 214, 424, 436, 712
FspBI	CTAG	5 cut(s)	27, 387, 723, 801, 819
GlaI	GCGC	1 cut(s)	894
GluI	GCNGC	6 cut(s)	96, 99, 214, 424, 436, 712
HaeIII	GGCC	4 cut(s)	213, 378, 495, 850
HapII	CCGG	2 cut(s)	833, 890
HhaI	GCGC	1 cut(s)	895
Hin1II	CATG	6 cut(s)	67, 258, 365, 516, 628, 653
Hin6I	GCGC	1 cut(s)	893
HinP1I	GCGC	1 cut(s)	893
HinfI	GANTC	1 cut(s)	727
HpaII	CCGG	2 cut(s)	833, 890
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	4 cut(s)	169, 472, 732, 901
Hpy188III	TCNNGA	8 cut(s)	287, 314, 575, 641, 650, 801, 813, 864
Hpy8I	GTNNAC	1 cut(s)	128
Hpy99I	CGWCG	1 cut(s)	399
HpyAV	CCTTC	6 cut(s)	229, 510, 520, 578, 759, 852
HpyCH4III	ACNGT	1 cut(s)	581
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	6 cut(s)	54, 84, 95, 293, 302, 827
HpyF10VI	GCNNNNNNNGC	4 cut(s)	255, 299, 423, 432
HpyF3I	CTNAG	1 cut(s)	166
HpySE526I	ACGT	1 cut(s)	463
Hsp92II	CATG	6 cut(s)	67, 258, 365, 516, 628, 653
HspAI	GCGC	1 cut(s)	893
Kzo9I	GATC	8 cut(s)	391, 529, 680, 791, 803, 815, 854, 866
LmnI	GCTCC	2 cut(s)	732, 787
LpnPI	CCDG	6 cut(s)	531, 832, 846, 859, 861, 903
Lsp1109I	GCAGC	5 cut(s)	107, 110, 435, 447, 723
LweI	GCATC	4 cut(s)	41, 280, 289, 836
MaeI	CTAG	5 cut(s)	27, 387, 723, 801, 819
MaeII	ACGT	1 cut(s)	463
MaeIII	GTNAC	1 cut(s)	575
MalI	GATC	8 cut(s)	393, 531, 682, 793, 805, 817, 856, 868
MboI	GATC	8 cut(s)	391, 529, 680, 791, 803, 815, 854, 866
MboII	GAAGA	4 cut(s)	16, 203, 308, 495
MflI	RGATCY	2 cut(s)	680, 815
MhlI	GDGCHC	1 cut(s)	380
MlyI	GAGTC	1 cut(s)	736
MmeI	TCCRAC	2 cut(s)	28, 710
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	3 cut(s)	344, 663, 696
MspI	CCGG	2 cut(s)	833, 890
MspR9I	CCNGG	2 cut(s)	847, 890
MvaI	CCWGG	1 cut(s)	847
MvnI	CGCG	1 cut(s)	895
MwoI	GCNNNNNNNGC	4 cut(s)	255, 299, 423, 432
NciI	CCSGG	1 cut(s)	890
NcoI	CCATGG	1 cut(s)	361
NdeI	CATATG	1 cut(s)	534
NdeII	GATC	8 cut(s)	391, 529, 680, 791, 803, 815, 854, 866
NlaIII	CATG	6 cut(s)	67, 258, 365, 516, 628, 653
NlaIV	GGNNCC	3 cut(s)	240, 377, 378
NmeAIII	GCCGAG	1 cut(s)	589
NmuCI	GTSAC	1 cut(s)	575
PagI	TCATGA	1 cut(s)	649
PdmI	GAANNNNTTC	1 cut(s)	71
PkrI	GCNGC	6 cut(s)	97, 100, 215, 425, 437, 713
PleI	GAGTC	1 cut(s)	735
PpsI	GAGTC	1 cut(s)	735
PsiI	TTATAA	1 cut(s)	609
Psp6I	CCWGG	1 cut(s)	845
PspGI	CCWGG	1 cut(s)	845
PspN4I	GGNNCC	3 cut(s)	240, 377, 378
PspOMI	GGGCCC	1 cut(s)	376
PspPI	GGNCC	2 cut(s)	376, 377
PsuI	RGATCY	2 cut(s)	680, 815
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SaqAI	TTAA	3 cut(s)	344, 663, 696
SatI	GCNGC	6 cut(s)	96, 99, 214, 424, 436, 712
Sau3AI	GATC	8 cut(s)	391, 529, 680, 791, 803, 815, 854, 866
Sau96I	GGNCC	2 cut(s)	376, 377
SchI	GAGTC	1 cut(s)	736
ScrFI	CCNGG	2 cut(s)	847, 890
SduI	GDGCHC	1 cut(s)	380
SfaNI	GCATC	4 cut(s)	41, 280, 289, 836
SfcI	CTRYAG	1 cut(s)	259
SsiI	CCGC	4 cut(s)	214, 380, 886, 895
SspI	AATATT	1 cut(s)	58
SspMI	CTAG	5 cut(s)	27, 387, 723, 801, 819
StyD4I	CCNGG	2 cut(s)	845, 888
StyI	CCWWGG	2 cut(s)	361, 671
TaaI	ACNGT	1 cut(s)	581
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	2 cut(s)	448, 478
TauI	GCSGC	1 cut(s)	216
Tru1I	TTAA	3 cut(s)	344, 663, 696
Tru9I	TTAA	3 cut(s)	344, 663, 696
TscAI	CASTG	2 cut(s)	445, 586
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	5 cut(s)	95, 98, 423, 435, 711
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	6 cut(s)	17, 80, 501, 638, 641, 720
TspRI	CASTG	2 cut(s)	445, 586
XapI	RAATTY	3 cut(s)	89, 473, 659
XbaI	TCTAGA	1 cut(s)	800
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	5 cut(s)	27, 387, 723, 801, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.