Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004906

Physical Location & Seq

Genomic Coordinates Reverse (-)

53519577 .. 53522518

Gene Structure 2942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0436100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGACGAGAAAAGCATACCCATACGGAGTCAAATCTCATATTCGCACCAAAGAGTACAGAATCGACTCTGGTGTGGCTGGACTTTTGATTGTCCTTAAAAATCTAAGGAAAAGATATGGACTTGCAATGCATACATCAGAAGAGAGGAGAGCAATATCTGGTATTATGAAAGAAATCATCCATGGAGGAGAAGAGGAAATTGCAGATACCATGCCTAGAATTAAGGCTGCCAAGAATTGTTCTTTTCAGAGAATTGAATTTGTATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

89

Amino Acids

10.24

Weight (kDa)

9.81

Isoelectric Point (pI)

50.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430
fragaria_vesca	FvH4_7g32850 FvH4_7g32850
malus_domestica	MD01G1227800.v1.1 MD01G1227900.v1.1 MD07G1298400.v1.1
prunus_persica	Prupe.2G318200_v2.0.a1
pyrus_communis	pycom01g23610 pycom07g27080
rosa_chinensis	RchiOBHm_Chr1g0382791
rosa_laevigata	RLG00000026159
rosa_multiflora	Rmu_sc0002242.1_g000001 Rmu_sc0003389.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277900
rosa_rugosa	Rorug01G0435900.1 Rorug01G0436000 Rorug01G0436100 Rorug01G0436200 Rorug01G0436300
rosa_samantha	Rh1AG461200 Rh1BG417900 Rh1CG431700 Rh1DG450100
rosa_wichuraiana	Rw1G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	257
AfaI	GTAC	1 cut(s)	56
AgsI	TTSAA	1 cut(s)	257
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	214
BfaI	CTAG	1 cut(s)	216
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
BsaJI	CCNNGG	1 cut(s)	181
Bse3DI	GCAATG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	1 cut(s)	177
BseMI	GCAATG	1 cut(s)	132
BseRI	GAGGAG	2 cut(s)	160, 201
BseXI	GCAGC	1 cut(s)	214
Bsp19I	CCATGG	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	181
Bst6I	CTCTTC	2 cut(s)	135, 186
BstDEI	CTNAG	1 cut(s)	104
BstDSI	CCRYGG	1 cut(s)	181
BstF5I	GGATG	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	214
BtgI	CCRYGG	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	2 cut(s)	182, 211
CviJI	RGCY	2 cut(s)	77, 227
CviKI_1	RGCY	2 cut(s)	77, 227
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	1 cut(s)	104
Eam1104I	CTCTTC	2 cut(s)	135, 186
EarI	CTCTTC	2 cut(s)	135, 186
Eco130I	CCWWGG	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	181
EcoT22I	ATGCAT	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	181
FaeI	CATG	2 cut(s)	185, 214
FaiI	YATR	9 cut(s)	16, 22, 39, 117, 132, 167, 183, 212, 265
FatI	CATG	2 cut(s)	181, 210
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	1 cut(s)	228
Hin1II	CATG	2 cut(s)	185, 214
HinfI	GANTC	3 cut(s)	27, 60, 65
Hpy188I	TCNGA	2 cut(s)	139, 249
HpyCH4V	TGCA	3 cut(s)	125, 130, 203
HpyF3I	CTNAG	1 cut(s)	104
Hsp92II	CATG	2 cut(s)	185, 214
LpnPI	CCDG	3 cut(s)	54, 63, 144
Lsp1109I	GCAGC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	216
MboII	GAAGA	2 cut(s)	152, 203
MluCI	AATT	5 cut(s)	198, 219, 235, 252, 257
MlyI	GAGTC	2 cut(s)	36, 59
MnlI	CCTC	3 cut(s)	138, 179, 187
Mph1103I	ATGCAT	1 cut(s)	132
MseI	TTAA	3 cut(s)	96, 222, 268
NcoI	CCATGG	1 cut(s)	181
NlaIII	CATG	2 cut(s)	185, 214
NsiI	ATGCAT	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	60
PkrI	GCNGC	1 cut(s)	229
PleI	GAGTC	2 cut(s)	35, 59
PpsI	GAGTC	2 cut(s)	35, 59
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SaqAI	TTAA	3 cut(s)	96, 222, 268
SatI	GCNGC	1 cut(s)	228
SchI	GAGTC	2 cut(s)	36, 59
SgeI	CNNG	9 cut(s)	18, 81, 90, 134, 171, 194, 223, 228, 244
Sse9I	AATT	5 cut(s)	198, 219, 235, 252, 257
SspMI	CTAG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	181
TaqI	TCGA	1 cut(s)	63
TasI	AATT	5 cut(s)	198, 219, 235, 252, 257
TatI	WGTACW	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	60
Tru1I	TTAA	3 cut(s)	96, 222, 268
Tru9I	TTAA	3 cut(s)	96, 222, 268
TseI	GCWGC	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	182
TspGWI	ACGGA	1 cut(s)	39
XapI	RAATTY	1 cut(s)	257
XspI	CTAG	1 cut(s)	216
Zsp2I	ATGCAT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.