Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002242.1

Orthogroup ID

OG0004906

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4578

Gene Structure 4578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002242.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

gcgccggcgctgcccacaaccgcactcttcacctccgaagcttctccgattcgtctccgaaaatttgcagcagccaatcttttggtctcaaatatgagtggacgattttctcgcacaatttatgtcggcaacctaccctcagatataagagaacgggaggttgaagatttattctacaagtatggccgcattttggatattgaattgaaggttccacctcgccctccatgctatagttttgttgagtttgagagttctcgggatgcagaagatgcaattaggggtcgtgatgggtacaactttgatggctgtcgtttaagggttgagcttgcccatggtggtagtaggggcccgccacctagtgatcgtcgtggtggatatggtggaggcagtagcagaggaggcagcagtgggggtcgatttggtgtctcacgtcattctgaatttcgagttattgttcgtggcctcccttcttctgcttcatggcaagatttgaaggatcatatgcgaaaagctggtgatgtgtgttttgccgaggtttgtcgtgacagtgaagggacttatggcttggttgattataacaattatgatgacatgaaatatgctgttcgggaacttcatgatactgaatttaaaaatccttgggcaagatcttatattcgggttaaagtgtatgaaagcagcagtccctctaggagtcggagcagaagccgtagcagaagccgtagtgtaagaaggaataagagcaattctttggagcgatctgtttctagatcagtttcaagatctaggtctgcatctccggtcaaaccttccaggccaagatcaatgtcaagatcaaggtcagggtctccccgcccggcgcggtcagatagtgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

293

Amino Acids

32.75

Weight (kDa)

10.35

Isoelectric Point (pI)

80.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430
fragaria_vesca	FvH4_7g32850 FvH4_7g32850
malus_domestica	MD01G1227800.v1.1 MD01G1227900.v1.1 MD07G1298400.v1.1
prunus_persica	Prupe.2G318200_v2.0.a1
pyrus_communis	pycom01g23610 pycom07g27080
rosa_chinensis	RchiOBHm_Chr1g0382791
rosa_laevigata	RLG00000026159
rosa_multiflora	Rmu_sc0002242.1_g000001 Rmu_sc0003389.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277900
rosa_rugosa	Rorug01G0435900.1 Rorug01G0436000 Rorug01G0436100 Rorug01G0436200 Rorug01G0436300
rosa_samantha	Rh1AG461200 Rh1BG417900 Rh1CG431700 Rh1DG450100
rosa_wichuraiana	Rw1G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	579
AccII	CGCG	1 cut(s)	865
AciI	CCGC	5 cut(s)	21, 187, 353, 856, 865
AclWI	GGATC	1 cut(s)	507
AcoI	YGGCCR	1 cut(s)	184
AcsI	RAATTY	3 cut(s)	62, 443, 629
AdeI	CACNNNGTG	1 cut(s)	362
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	5 cut(s)	164, 203, 208, 496, 783
AjiI	CACGTC	1 cut(s)	434
AjnI	CCWGG	1 cut(s)	815
AluBI	AGCT	3 cut(s)	41, 328, 515
AluI	AGCT	3 cut(s)	41, 328, 515
Alw26I	GTCTC	4 cut(s)	59, 91, 433, 855
AlwI	GGATC	1 cut(s)	507
Ama87I	CYCGRG	1 cut(s)	258
AoxI	GGCC	4 cut(s)	184, 349, 463, 818
ApaI	GGGCCC	1 cut(s)	353
ApeKI	GCWGC	5 cut(s)	10, 68, 71, 405, 681
ApoI	RAATTY	3 cut(s)	62, 443, 629
AspLEI	GCGC	3 cut(s)	4, 10, 865
AspS9I	GGNCC	2 cut(s)	349, 350
AsuC2I	CCSGG	1 cut(s)	860
AsuHPI	GGTGA	2 cut(s)	22, 530
AvaI	CYCGRG	1 cut(s)	258
BaeGI	GKGCMC	1 cut(s)	353
BanII	GRGCYC	1 cut(s)	353
BbvI	GCAGC	4 cut(s)	80, 83, 417, 693
BccI	CCATC	2 cut(s)	284, 299
BceAI	ACGGC	2 cut(s)	696, 708
BciT130I	CCWGG	1 cut(s)	817
BcnI	CCSGG	1 cut(s)	860
BcoDI	GTCTC	4 cut(s)	59, 91, 433, 855
BfaI	CTAG	4 cut(s)	360, 693, 771, 789
BfmI	CTRYAG	1 cut(s)	232
BfoI	RGCGCY	1 cut(s)	11
BglII	AGATCT	2 cut(s)	650, 785
BisI	GCNGC	6 cut(s)	11, 69, 72, 187, 406, 682
BlsI	GCNGC	6 cut(s)	12, 70, 73, 188, 407, 683
Bme1390I	CCNGG	2 cut(s)	817, 860
BmeT110I	CYCGRG	1 cut(s)	258
BmgBI	CACGTC	1 cut(s)	434
BmgT120I	GGNCC	2 cut(s)	349, 350
BmiI	GGNNCC	3 cut(s)	213, 350, 351
BmrFI	CCNGG	2 cut(s)	817, 860
BmsI	GCATC	3 cut(s)	253, 262, 806
BpuMI	CCSGG	1 cut(s)	860
BsaI	GGTCTC	2 cut(s)	91, 855
BsaJI	CCNNGG	3 cut(s)	334, 534, 641
BsaWI	WCCGGW	1 cut(s)	802
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse118I	RCCGGY	1 cut(s)	4
BseBI	CCWGG	1 cut(s)	817
BseDI	CCNNGG	3 cut(s)	334, 534, 641
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	153
BseRI	GAGGAG	1 cut(s)	414
BseSI	GKGCMC	1 cut(s)	353
BseXI	GCAGC	4 cut(s)	80, 83, 417, 693
Bsh1236I	CGCG	1 cut(s)	865
BshFI	GGCC	4 cut(s)	186, 351, 465, 820
BsiHKCI	CYCGRG	1 cut(s)	258
BsiSI	CCGG	3 cut(s)	5, 803, 860
BslFI	GGGAC	2 cut(s)	571, 672
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	4 cut(s)	59, 91, 433, 855
BsmBI	CGTCTC	1 cut(s)	59
BsmFI	GGGAC	2 cut(s)	571, 672
BsnI	GGCC	4 cut(s)	186, 351, 465, 820
Bso31I	GGTCTC	2 cut(s)	91, 855
BsoBI	CYCGRG	1 cut(s)	258
Bsp120I	GGGCCC	1 cut(s)	349
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	8 cut(s)	364, 499, 650, 761, 773, 785, 824, 836
Bsp19I	CCATGG	1 cut(s)	334
BspACI	CCGC	5 cut(s)	21, 187, 353, 856, 865
BspANI	GGCC	4 cut(s)	186, 351, 465, 820
BspCNI	CTCAG	1 cut(s)	152
BspFNI	CGCG	1 cut(s)	865
BspHI	TCATGA	1 cut(s)	619
BspLI	GGNNCC	3 cut(s)	213, 350, 351
BspPI	GGATC	1 cut(s)	507
BspTNI	GGTCTC	2 cut(s)	91, 855
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	3 cut(s)	334, 534, 641
BssMI	GATC	8 cut(s)	364, 499, 650, 761, 773, 785, 824, 836
BssT1I	CCWWGG	2 cut(s)	334, 641
Bst2UI	CCWGG	1 cut(s)	817
Bst4CI	ACNGT	1 cut(s)	551
Bst6I	CTCTTC	1 cut(s)	32
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstC8I	GCNNGC	3 cut(s)	6, 330, 353
BstDEI	CTNAG	1 cut(s)	139
BstDSI	CCRYGG	1 cut(s)	334
BstF5I	GGATG	1 cut(s)	268
BstFNI	CGCG	1 cut(s)	865
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	3 cut(s)	4, 10, 865
BstKTI	GATC	8 cut(s)	367, 502, 653, 764, 776, 788, 827, 839
BstMAI	GTCTC	4 cut(s)	59, 91, 433, 855
BstMBI	GATC	8 cut(s)	364, 499, 650, 761, 773, 785, 824, 836
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 228, 272, 402
BstNI	CCWGG	1 cut(s)	817
BstSCI	CCNGG	2 cut(s)	815, 858
BstSFI	CTRYAG	1 cut(s)	232
BstSLI	GKGCMC	1 cut(s)	353
BstUI	CGCG	1 cut(s)	865
BstV1I	GCAGC	4 cut(s)	80, 83, 417, 693
BstX2I	RGATCY	2 cut(s)	650, 785
BstXI	CCANNNNNNTGG	1 cut(s)	82
BstYI	RGATCY	2 cut(s)	650, 785
BsuRI	GGCC	4 cut(s)	186, 351, 465, 820
BtgI	CCRYGG	1 cut(s)	334
BtrI	CACGTC	1 cut(s)	434
BtsCI	GGATG	1 cut(s)	268
BtsI	GCAGTG	1 cut(s)	415
BtsIMutI	CAGTG	2 cut(s)	415, 556
Cac8I	GCNNGC	3 cut(s)	6, 330, 353
CciI	TCATGA	1 cut(s)	619
CfoI	GCGC	3 cut(s)	4, 10, 865
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	2 cut(s)	349, 350
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	5 cut(s)	228, 335, 483, 595, 620
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	1 cut(s)	139
DpnI	GATC	8 cut(s)	366, 501, 652, 763, 775, 787, 826, 838
DpnII	GATC	8 cut(s)	364, 499, 650, 761, 773, 785, 824, 836
DraI	TTTAAA	1 cut(s)	634
DraIII	CACNNNGTG	1 cut(s)	362
EaeI	YGGCCR	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco130I	CCWWGG	2 cut(s)	334, 641
Eco24I	GRGCYC	1 cut(s)	353
Eco31I	GGTCTC	2 cut(s)	91, 855
Eco88I	CYCGRG	1 cut(s)	258
EcoO109I	RGGNCCY	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	815
EcoT14I	CCWWGG	2 cut(s)	334, 641
EcoT38I	GRGCYC	1 cut(s)	353
ErhI	CCWWGG	2 cut(s)	334, 641
Esp3I	CGTCTC	1 cut(s)	59
FaeI	CATG	5 cut(s)	231, 338, 486, 598, 623
FaqI	GGGAC	2 cut(s)	571, 672
FatI	CATG	5 cut(s)	227, 334, 482, 594, 619
FauI	CCCGC	2 cut(s)	360, 863
FauNDI	CATATG	1 cut(s)	504
Fnu4HI	GCNGC	6 cut(s)	11, 69, 72, 187, 406, 682
FokI	GGATG	1 cut(s)	275
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	6 cut(s)	11, 69, 72, 187, 406, 682
FspBI	CTAG	4 cut(s)	360, 693, 771, 789
GlaI	GCGC	3 cut(s)	3, 9, 864
GluI	GCNGC	6 cut(s)	11, 69, 72, 187, 406, 682
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	4 cut(s)	186, 351, 465, 820
HapII	CCGG	3 cut(s)	5, 803, 860
HhaI	GCGC	3 cut(s)	4, 10, 865
Hin1II	CATG	5 cut(s)	231, 338, 486, 598, 623
Hin6I	GCGC	3 cut(s)	2, 8, 863
HinP1I	GCGC	3 cut(s)	2, 8, 863
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	2 cut(s)	49, 697
HpaII	CCGG	3 cut(s)	5, 803, 860
HphI	GGTGA	2 cut(s)	22, 530
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	7 cut(s)	37, 48, 59, 142, 442, 702, 871
Hpy188III	TCNNGA	8 cut(s)	260, 287, 545, 611, 620, 771, 783, 834
Hpy8I	GTNNAC	1 cut(s)	101
Hpy99I	CGWCG	1 cut(s)	372
HpyAV	CCTTC	6 cut(s)	202, 480, 490, 548, 729, 822
HpyCH4III	ACNGT	1 cut(s)	551
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	4 cut(s)	68, 266, 275, 797
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 228, 272, 402
HpyF3I	CTNAG	1 cut(s)	139
HpySE526I	ACGT	1 cut(s)	433
Hsp92II	CATG	5 cut(s)	231, 338, 486, 598, 623
HspAI	GCGC	3 cut(s)	2, 8, 863
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	8 cut(s)	364, 499, 650, 761, 773, 785, 824, 836
LmnI	GCTCC	2 cut(s)	702, 757
LpnPI	CCDG	7 cut(s)	18, 501, 802, 816, 829, 831, 873
Lsp1109I	GCAGC	4 cut(s)	80, 83, 417, 693
LweI	GCATC	3 cut(s)	253, 262, 806
MaeI	CTAG	4 cut(s)	360, 693, 771, 789
MaeII	ACGT	1 cut(s)	433
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	8 cut(s)	366, 501, 652, 763, 775, 787, 826, 838
MboI	GATC	8 cut(s)	364, 499, 650, 761, 773, 785, 824, 836
MboII	GAAGA	4 cut(s)	19, 176, 281, 465
MflI	RGATCY	2 cut(s)	650, 785
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	8 cut(s)	62, 117, 203, 276, 443, 583, 629, 748
MlyI	GAGTC	1 cut(s)	706
MmeI	TCCRAC	1 cut(s)	680
MreI	CGCCGGCG	1 cut(s)	4
MroNI	GCCGGC	1 cut(s)	4
MseI	TTAA	3 cut(s)	317, 633, 666
MspI	CCGG	3 cut(s)	5, 803, 860
MspR9I	CCNGG	2 cut(s)	817, 860
MvaI	CCWGG	1 cut(s)	817
MvnI	CGCG	1 cut(s)	865
MwoI	GCNNNNNNNGC	4 cut(s)	10, 228, 272, 402
NaeI	GCCGGC	1 cut(s)	6
NciI	CCSGG	1 cut(s)	860
NcoI	CCATGG	1 cut(s)	334
NdeI	CATATG	1 cut(s)	504
NdeII	GATC	8 cut(s)	364, 499, 650, 761, 773, 785, 824, 836
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	5 cut(s)	231, 338, 486, 598, 623
NlaIV	GGNNCC	3 cut(s)	213, 350, 351
NmeAIII	GCCGAG	1 cut(s)	559
NmuCI	GTSAC	1 cut(s)	545
PagI	TCATGA	1 cut(s)	619
PdiI	GCCGGC	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	49
PkrI	GCNGC	6 cut(s)	12, 70, 73, 188, 407, 683
PleI	GAGTC	1 cut(s)	705
PpsI	GAGTC	1 cut(s)	705
PsiI	TTATAA	1 cut(s)	579
Psp6I	CCWGG	1 cut(s)	815
PspGI	CCWGG	1 cut(s)	815
PspN4I	GGNNCC	3 cut(s)	213, 350, 351
PspOMI	GGGCCC	1 cut(s)	349
PspPI	GGNCC	2 cut(s)	349, 350
PsuI	RGATCY	2 cut(s)	650, 785
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SaqAI	TTAA	3 cut(s)	317, 633, 666
SatI	GCNGC	6 cut(s)	11, 69, 72, 187, 406, 682
Sau3AI	GATC	8 cut(s)	364, 499, 650, 761, 773, 785, 824, 836
Sau96I	GGNCC	2 cut(s)	349, 350
SchI	GAGTC	1 cut(s)	706
ScrFI	CCNGG	2 cut(s)	817, 860
SduI	GDGCHC	1 cut(s)	353
SfaNI	GCATC	3 cut(s)	253, 262, 806
SfcI	CTRYAG	1 cut(s)	232
SgrAI	CRCCGGYG	1 cut(s)	4
Sse9I	AATT	8 cut(s)	62, 117, 203, 276, 443, 583, 629, 748
SsiI	CCGC	5 cut(s)	21, 187, 353, 856, 865
SspMI	CTAG	4 cut(s)	360, 693, 771, 789
StyD4I	CCNGG	2 cut(s)	815, 858
StyI	CCWWGG	2 cut(s)	334, 641
TaaI	ACNGT	1 cut(s)	551
TaiI	ACGT	1 cut(s)	436
TaqI	TCGA	2 cut(s)	418, 448
TasI	AATT	8 cut(s)	62, 117, 203, 276, 443, 583, 629, 748
TauI	GCSGC	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	3 cut(s)	317, 633, 666
Tru9I	TTAA	3 cut(s)	317, 633, 666
TscAI	CASTG	2 cut(s)	415, 556
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	5 cut(s)	10, 68, 71, 405, 681
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	4 cut(s)	471, 608, 611, 690
TspRI	CASTG	2 cut(s)	415, 556
XapI	RAATTY	3 cut(s)	62, 443, 629
XbaI	TCTAGA	1 cut(s)	770
XspI	CTAG	4 cut(s)	360, 693, 771, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.