Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004906

Physical Location & Seq

Genomic Coordinates Forward (+)

35798987 .. 35803895

Gene Structure 4909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1298400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAGTGGTCGATTTTCTCGCACAATCTATGTTGGCAACCTTCCCTCAGATATAAAAGAATGGGAGGTTGAAGATCTATTCTACAAGTATGGCCGCATAGTGGATATTGAACTGAAGATTCCACCACGTCCTCCGTGTTATTCATTTGTTGAGTTTGAAAGTTCTCGGGATGCAGAAGATGCAATAAGAGGGCGTGATGGGTATAACTTTGATGGTTGCCGTTTAAGGGTTGAACTTGCCCATGGTGGTAGGGGACCATCTTCAAGTGATCGTCGTAGTGGATATGACCGAGGCAGTGGTGGGGGTCAGTTTGGCGTTTCACGTCATTCTGAGTATCGAGTTATTGTTCGAAATCTCCCTTCTTCCGCCTCTTGGCAAGACTTGAAGGATCATATGCGTAGAGCTGGTGATGTGTGTTTTGCTGAGGTTTCTCGTGACAGTGAAGGGACTTATGGCTTAGTTGATTATACCAATTCTGATGACATGAAATATGCCATCCGGAAGCTTGATGACACTGAATTTAAAAATCCTTGGGCAAGAACTCATATTTGGGTTAAATATTACGATAGGAGCCCCTCAAGGAGCCGTAGTAGAAGTCGTAGCAGAAGCCGGAGTGTAAGAAGGAATCGGAGCAAGTCGTTGGAGCGATCTGTATCAAAATCGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

223

Amino Acids

25.63

Weight (kDa)

9.62

Isoelectric Point (pI)

65.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 76	5.1e-17	RNA recognition motif
RRM_1	PF00076	114 - 176	2.3e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430
fragaria_vesca	FvH4_7g32850 FvH4_7g32850
malus_domestica	MD01G1227800.v1.1 MD01G1227900.v1.1 MD07G1298400.v1.1
prunus_persica	Prupe.2G318200_v2.0.a1
pyrus_communis	pycom01g23610 pycom07g27080
rosa_chinensis	RchiOBHm_Chr1g0382791
rosa_laevigata	RLG00000026159
rosa_multiflora	Rmu_sc0002242.1_g000001 Rmu_sc0003389.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277900
rosa_rugosa	Rorug01G0435900.1 Rorug01G0436000 Rorug01G0436100 Rorug01G0436200 Rorug01G0436300
rosa_samantha	Rh1AG461200 Rh1BG417900 Rh1CG431700 Rh1DG450100
rosa_wichuraiana	Rw1G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	498
AciI	CCGC	2 cut(s)	94, 366
AclWI	GGATC	1 cut(s)	396
AcoI	YGGCCR	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	518
AcuI	CTGAAG	1 cut(s)	134
AfiI	CCNNNNNNNGG	3 cut(s)	100, 226, 372
AgsI	TTSAA	6 cut(s)	71, 110, 158, 233, 264, 385
AjiI	CACGTC	2 cut(s)	128, 323
AjuI	GAANNNNNNNTTGG	2 cut(s)	532, 564
AluBI	AGCT	2 cut(s)	404, 505
AluI	AGCT	2 cut(s)	404, 505
AlwI	GGATC	1 cut(s)	396
Ama87I	CYCGRG	1 cut(s)	165
Aor13HI	TCCGGA	1 cut(s)	498
AoxI	GGCC	1 cut(s)	91
ApoI	RAATTY	1 cut(s)	518
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	419
AsuII	TTCGAA	1 cut(s)	349
AvaI	CYCGRG	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	575
BauI	CACGAG	1 cut(s)	432
BbvCI	CCTCAGC	1 cut(s)	423
BccI	CCATC	4 cut(s)	191, 206, 265, 503
BceAI	ACGGC	2 cut(s)	204, 570
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	1 cut(s)	94
BlsI	GCNGC	1 cut(s)	95
Bme18I	GGWCC	1 cut(s)	254
BmeT110I	CYCGRG	1 cut(s)	165
BmgBI	CACGTC	2 cut(s)	128, 323
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	3 cut(s)	255, 572, 584
BmsI	GCATC	2 cut(s)	160, 169
Bpu10I	CCTNAGC	1 cut(s)	423
Bpu14I	TTCGAA	1 cut(s)	349
BpuEI	CTTGAG	1 cut(s)	562
BsaBI	GATNNNNATC	1 cut(s)	652
BsaJI	CCNNGG	3 cut(s)	241, 289, 530
BsaWI	WCCGGW	1 cut(s)	498
BsaXI	ACNNNNNCTCC	2 cut(s)	574, 604
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 226, 372
Bse8I	GATNNNNATC	1 cut(s)	652
BseAI	TCCGGA	1 cut(s)	498
BseDI	CCNNGG	3 cut(s)	241, 289, 530
BseGI	GGATG	2 cut(s)	175, 495
BseJI	GATNNNNATC	1 cut(s)	652
BseLI	CCNNNNNNNGG	3 cut(s)	100, 226, 372
BseMII	CTCAG	3 cut(s)	60, 321, 414
BshFI	GGCC	1 cut(s)	93
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	2 cut(s)	499, 610
BslFI	GGGAC	2 cut(s)	267, 460
BslI	CCNNNNNNNGG	3 cut(s)	100, 226, 372
BsmFI	GGGAC	2 cut(s)	267, 460
BsnI	GGCC	1 cut(s)	93
BsoBI	CYCGRG	1 cut(s)	165
Bsp119I	TTCGAA	1 cut(s)	349
Bsp1286I	GDGCHC	1 cut(s)	575
Bsp13I	TCCGGA	1 cut(s)	498
Bsp143I	GATC	4 cut(s)	73, 268, 388, 647
Bsp19I	CCATGG	1 cut(s)	241
BspACI	CCGC	2 cut(s)	94, 366
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	3 cut(s)	59, 322, 415
BspEI	TCCGGA	1 cut(s)	498
BspLI	GGNNCC	3 cut(s)	255, 572, 584
BspPI	GGATC	1 cut(s)	396
BspT104I	TTCGAA	1 cut(s)	349
BssECI	CCNNGG	3 cut(s)	241, 289, 530
BssMI	GATC	4 cut(s)	73, 268, 388, 647
BssSI	CACGAG	1 cut(s)	432
BssT1I	CCWWGG	2 cut(s)	241, 530
Bst2BI	CACGAG	1 cut(s)	432
Bst4CI	ACNGT	1 cut(s)	440
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstBI	TTCGAA	1 cut(s)	349
BstDEI	CTNAG	4 cut(s)	46, 330, 423, 457
BstDSI	CCRYGG	1 cut(s)	241
BstF5I	GGATG	2 cut(s)	175, 495
BstKTI	GATC	4 cut(s)	76, 271, 391, 650
BstMBI	GATC	4 cut(s)	73, 268, 388, 647
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	93
BtgI	CCRYGG	1 cut(s)	241
BtrI	CACGTC	2 cut(s)	128, 323
BtsCI	GGATG	2 cut(s)	175, 495
BtsI	GCAGTG	1 cut(s)	301
BtsIMutI	CAGTG	3 cut(s)	301, 445, 513
Cfr13I	GGNCC	1 cut(s)	254
CviAII	CATG	2 cut(s)	242, 484
CviJI	RGCY	7 cut(s)	93, 404, 456, 505, 573, 585, 609
CviKI_1	RGCY	7 cut(s)	93, 404, 456, 505, 573, 585, 609
DdeI	CTNAG	4 cut(s)	46, 330, 423, 457
DpnI	GATC	4 cut(s)	75, 270, 390, 649
DpnII	GATC	4 cut(s)	73, 268, 388, 647
DraI	TTTAAA	1 cut(s)	523
EaeI	YGGCCR	1 cut(s)	91
EciI	GGCGGA	1 cut(s)	355
Eco130I	CCWWGG	2 cut(s)	241, 530
Eco24I	GRGCYC	1 cut(s)	575
Eco47I	GGWCC	1 cut(s)	254
Eco57I	CTGAAG	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	165
EcoT14I	CCWWGG	2 cut(s)	241, 530
EcoT38I	GRGCYC	1 cut(s)	575
ErhI	CCWWGG	2 cut(s)	241, 530
FaeI	CATG	2 cut(s)	245, 487
FaqI	GGGAC	2 cut(s)	267, 460
FatI	CATG	2 cut(s)	241, 483
FauNDI	CATATG	1 cut(s)	393
Fnu4HI	GCNGC	1 cut(s)	94
FokI	GGATG	2 cut(s)	182, 482
FriOI	GRGCYC	1 cut(s)	575
Fsp4HI	GCNGC	1 cut(s)	94
GluI	GCNGC	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	2 cut(s)	499, 610
Hin1II	CATG	2 cut(s)	245, 487
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	2 cut(s)	118, 625
HpaII	CCGG	2 cut(s)	499, 610
HphI	GGTGA	1 cut(s)	419
Hpy188I	TCNGA	4 cut(s)	49, 331, 478, 630
Hpy188III	TCNNGA	3 cut(s)	167, 434, 499
Hpy99I	CGWCG	1 cut(s)	276
HpyAV	CCTTC	5 cut(s)	50, 369, 379, 437, 615
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4IV	ACGT	2 cut(s)	127, 322
HpyCH4V	TGCA	2 cut(s)	173, 182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	4 cut(s)	46, 330, 423, 457
HpySE526I	ACGT	2 cut(s)	127, 322
Hsp92II	CATG	2 cut(s)	245, 487
Kpn2I	TCCGGA	1 cut(s)	498
Kzo9I	GATC	4 cut(s)	73, 268, 388, 647
LmnI	GCTCC	4 cut(s)	570, 582, 630, 643
LpnPI	CCDG	3 cut(s)	390, 512, 623
LweI	GCATC	2 cut(s)	160, 169
MaeII	ACGT	2 cut(s)	127, 322
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	4 cut(s)	75, 270, 390, 649
MboI	GATC	4 cut(s)	73, 268, 388, 647
MboII	GAAGA	5 cut(s)	83, 127, 188, 252, 354
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	575
MluCI	AATT	2 cut(s)	472, 518
MmeI	TCCRAC	1 cut(s)	621
MnlI	CCTC	8 cut(s)	55, 58, 141, 182, 284, 379, 418, 586
MroI	TCCGGA	1 cut(s)	498
MseI	TTAA	3 cut(s)	224, 522, 555
MspI	CCGG	2 cut(s)	499, 610
MwoI	GCNNNNNNNGC	1 cut(s)	179
NcoI	CCATGG	1 cut(s)	241
NdeI	CATATG	1 cut(s)	393
NdeII	GATC	4 cut(s)	73, 268, 388, 647
NlaIII	CATG	2 cut(s)	245, 487
NlaIV	GGNNCC	3 cut(s)	255, 572, 584
NmuCI	GTSAC	1 cut(s)	434
NspV	TTCGAA	1 cut(s)	349
PfeI	GAWTC	2 cut(s)	118, 625
PkrI	GCNGC	1 cut(s)	95
PspN4I	GGNNCC	3 cut(s)	255, 572, 584
PspPI	GGNCC	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	73
SaqAI	TTAA	3 cut(s)	224, 522, 555
SatI	GCNGC	1 cut(s)	94
Sau3AI	GATC	4 cut(s)	73, 268, 388, 647
Sau96I	GGNCC	1 cut(s)	254
SduI	GDGCHC	1 cut(s)	575
SetI	ASST	7 cut(s)	42, 69, 130, 325, 406, 429, 507
SfaNI	GCATC	2 cut(s)	160, 169
SfuI	TTCGAA	1 cut(s)	349
SinI	GGWCC	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	577
SmoI	CTYRAG	1 cut(s)	577
Sse9I	AATT	2 cut(s)	472, 518
SsiI	CCGC	2 cut(s)	94, 366
SspI	AATATT	1 cut(s)	560
StyI	CCWWGG	2 cut(s)	241, 530
TaaI	ACNGT	1 cut(s)	440
TaiI	ACGT	2 cut(s)	130, 325
TaqI	TCGA	3 cut(s)	10, 337, 349
TaqII	GACCGA	1 cut(s)	303
TasI	AATT	2 cut(s)	472, 518
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	2 cut(s)	118, 625
Tru1I	TTAA	3 cut(s)	224, 522, 555
Tru9I	TTAA	3 cut(s)	224, 522, 555
TscAI	CASTG	3 cut(s)	301, 445, 520
TseFI	GTSAC	1 cut(s)	434
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	2 cut(s)	132, 500
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	3 cut(s)	301, 445, 520
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.