Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004906

Physical Location & Seq

Genomic Coordinates Forward (+)

23531101 .. 23535546

Gene Structure 4446 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g32850.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAGTGGACGATTTTCTCGCACAATCTATGTCGGCAACCTACCGTCAGATATAAGAGAACGGGAGGTTGAAGATTTATTCTACAAGTATGGCCGCATTTTGGATATTGAATTGAAGATCCCACCTCGCCCTCCATGCTATAGTTTTGTTGAGTTTGAGAGTTCTCGCGATGCAGAAGATGCAATTAGGGGTCGTGATGGGTATGACTTTGATGGTTGTCGTTTAAGGGTTGAGCTTGCCCATGGTGGTAGCAGGGGCCCACCACCTAGTGATCGTCGTGGTGGATATGGTGGAGGCAGTAGCAGAGGAGGCCGCGGTGGGGGTGGGGGTGGGGGTCGATTTGGTGTCTCACGTCATTCTGAATTCCGAGTTATTGTTCGTGGGCTCCCGTCTTCTGCTTCATGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTGTGTTTTGCTGAGGTTTGCCGTGACAGTGAAGGGACTTATGGCTTGGTTGATTATAACAATTATGATGACATGAAATATGCTGTTCGGGAACTTACTGATACTGAATTTAAAAATCCTTGGGCAAGATCCTATATTCGGGTTAAAGTGTATGAACGCAGCAGTCCCTCTAGGAGTCGGAGCAGAAGCCGTAGCAGAAGCCGAAGTGTAAGAAGGGATAGGAGCAATTCTTTGGGGCGATCTGTTTCTAGATCAGTATCAAGATCTAGGTCTGCATCTCCGGTCAAACCTTCCAGGCCAAGAACAAGATCGAGATCAAGGTCAGGATCGCCCCGCCCGGCGCAGTCAGGTAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

267

Amino Acids

29.75

Weight (kDa)

10.46

Isoelectric Point (pI)

82.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	32 - 99	2.6e-17	RNA recognition motif
RRM_1	PF00076	147 - 209	4e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430
fragaria_vesca	FvH4_7g32850 FvH4_7g32850
malus_domestica	MD01G1227800.v1.1 MD01G1227900.v1.1 MD07G1298400.v1.1
prunus_persica	Prupe.2G318200_v2.0.a1
pyrus_communis	pycom01g23610 pycom07g27080
rosa_chinensis	RchiOBHm_Chr1g0382791
rosa_laevigata	RLG00000026159
rosa_multiflora	Rmu_sc0002242.1_g000001 Rmu_sc0003389.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277900
rosa_rugosa	Rorug01G0435900.1 Rorug01G0436000 Rorug01G0436100 Rorug01G0436200 Rorug01G0436300
rosa_samantha	Rh1AG461200 Rh1BG417900 Rh1CG431700 Rh1DG450100
rosa_wichuraiana	Rw1G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	498
AccII	CGCG	2 cut(s)	168, 315
AciI	CCGC	4 cut(s)	94, 313, 315, 775
AclWI	GGATC	4 cut(s)	112, 426, 564, 775
AcoI	YGGCCR	1 cut(s)	91
AcsI	RAATTY	2 cut(s)	362, 548
AdeI	CACNNNGTG	1 cut(s)	269
AfiI	CCNNNNNNNGG	3 cut(s)	100, 319, 579
AgsI	TTSAA	4 cut(s)	71, 110, 115, 415
AjiI	CACGTC	1 cut(s)	353
AjnI	CCWGG	1 cut(s)	734
AluBI	AGCT	2 cut(s)	235, 434
AluI	AGCT	2 cut(s)	235, 434
Alw26I	GTCTC	1 cut(s)	352
AlwI	GGATC	4 cut(s)	112, 426, 564, 775
AoxI	GGCC	4 cut(s)	91, 256, 310, 737
ApaI	GGGCCC	1 cut(s)	260
ApeKI	GCWGC	1 cut(s)	600
ApoI	RAATTY	2 cut(s)	362, 548
AspLEI	GCGC	1 cut(s)	784
AspS9I	GGNCC	2 cut(s)	256, 257
AsuC2I	CCSGG	1 cut(s)	779
AsuHPI	GGTGA	1 cut(s)	449
BaeGI	GKGCMC	1 cut(s)	260
BanII	GRGCYC	2 cut(s)	260, 387
BbsI	GAAGAC	1 cut(s)	384
BbvCI	CCTCAGC	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	612
BccI	CCATC	2 cut(s)	191, 206
BceAI	ACGGC	2 cut(s)	447, 615
BciT130I	CCWGG	1 cut(s)	736
BcnI	CCSGG	1 cut(s)	779
BcoDI	GTCTC	1 cut(s)	352
BfaI	CTAG	4 cut(s)	267, 612, 690, 708
BfmI	CTRYAG	1 cut(s)	139
BglII	AGATCT	1 cut(s)	704
BisI	GCNGC	3 cut(s)	94, 313, 601
BlsI	GCNGC	3 cut(s)	95, 314, 602
Bme1390I	CCNGG	2 cut(s)	736, 779
BmgBI	CACGTC	1 cut(s)	353
BmgT120I	GGNCC	2 cut(s)	256, 257
BmiI	GGNNCC	3 cut(s)	257, 258, 386
BmrFI	CCNGG	2 cut(s)	736, 779
BmsI	GCATC	3 cut(s)	160, 169, 725
BpiI	GAAGAC	1 cut(s)	384
Bpu10I	CCTNAGC	1 cut(s)	453
BpuMI	CCSGG	1 cut(s)	779
BsaBI	GATNNNNATC	2 cut(s)	697, 754
BsaJI	CCNNGG	3 cut(s)	241, 313, 560
BsaWI	WCCGGW	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 319, 579
Bse8I	GATNNNNATC	2 cut(s)	697, 754
BseBI	CCWGG	1 cut(s)	736
BseDI	CCNNGG	3 cut(s)	241, 313, 560
BseJI	GATNNNNATC	2 cut(s)	697, 754
BseLI	CCNNNNNNNGG	3 cut(s)	100, 319, 579
BseMII	CTCAG	1 cut(s)	444
BseRI	GAGGAG	1 cut(s)	321
BseSI	GKGCMC	1 cut(s)	260
BseXI	GCAGC	1 cut(s)	612
Bsh1236I	CGCG	2 cut(s)	168, 315
BshFI	GGCC	4 cut(s)	93, 258, 312, 739
BsiSI	CCGG	2 cut(s)	722, 779
BslFI	GGGAC	2 cut(s)	490, 591
BslI	CCNNNNNNNGG	3 cut(s)	100, 319, 579
BsmAI	GTCTC	1 cut(s)	352
BsmFI	GGGAC	2 cut(s)	490, 591
BsnI	GGCC	4 cut(s)	93, 258, 312, 739
Bsp120I	GGGCCC	1 cut(s)	256
Bsp1286I	GDGCHC	2 cut(s)	260, 387
Bsp19I	CCATGG	1 cut(s)	241
Bsp68I	TCGCGA	1 cut(s)	168
BspACI	CCGC	4 cut(s)	94, 313, 315, 775
BspANI	GGCC	4 cut(s)	93, 258, 312, 739
BspCNI	CTCAG	1 cut(s)	445
BspFNI	CGCG	2 cut(s)	168, 315
BspLI	GGNNCC	3 cut(s)	257, 258, 386
BspPI	GGATC	4 cut(s)	112, 426, 564, 775
BssECI	CCNNGG	3 cut(s)	241, 313, 560
BssT1I	CCWWGG	2 cut(s)	241, 560
Bst2UI	CCWGG	1 cut(s)	736
Bst4CI	ACNGT	2 cut(s)	45, 470
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	453
BstDSI	CCRYGG	2 cut(s)	241, 313
BstFNI	CGCG	2 cut(s)	168, 315
BstHHI	GCGC	1 cut(s)	784
BstMAI	GTCTC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 179, 309
BstNI	CCWGG	1 cut(s)	736
BstSCI	CCNGG	2 cut(s)	734, 777
BstSFI	CTRYAG	1 cut(s)	139
BstSLI	GKGCMC	1 cut(s)	260
BstUI	CGCG	2 cut(s)	168, 315
BstV1I	GCAGC	1 cut(s)	612
BstV2I	GAAGAC	1 cut(s)	384
BstX2I	RGATCY	3 cut(s)	117, 569, 704
BstYI	RGATCY	3 cut(s)	117, 569, 704
BsuRI	GGCC	4 cut(s)	93, 258, 312, 739
BtgI	CCRYGG	2 cut(s)	241, 313
BtgZI	GCGATG	1 cut(s)	183
BtrI	CACGTC	1 cut(s)	353
BtsIMutI	CAGTG	1 cut(s)	475
BtuMI	TCGCGA	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	237
CfoI	GCGC	1 cut(s)	784
Cfr13I	GGNCC	2 cut(s)	256, 257
Cfr42I	CCGCGG	1 cut(s)	316
CviAII	CATG	4 cut(s)	135, 242, 402, 514
DdeI	CTNAG	1 cut(s)	453
DraI	TTTAAA	1 cut(s)	553
DraIII	CACNNNGTG	1 cut(s)	269
EaeI	YGGCCR	1 cut(s)	91
Eco130I	CCWWGG	2 cut(s)	241, 560
Eco24I	GRGCYC	2 cut(s)	260, 387
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRI	GAATTC	1 cut(s)	362
EcoRII	CCWGG	1 cut(s)	734
EcoT14I	CCWWGG	2 cut(s)	241, 560
EcoT38I	GRGCYC	2 cut(s)	260, 387
ErhI	CCWWGG	2 cut(s)	241, 560
FaeI	CATG	4 cut(s)	138, 245, 405, 517
FaqI	GGGAC	2 cut(s)	490, 591
FatI	CATG	4 cut(s)	134, 241, 401, 513
FauI	CCCGC	1 cut(s)	782
FauNDI	CATATG	1 cut(s)	423
Fnu4HI	GCNGC	3 cut(s)	94, 313, 601
FriOI	GRGCYC	2 cut(s)	260, 387
Fsp4HI	GCNGC	3 cut(s)	94, 313, 601
FspBI	CTAG	4 cut(s)	267, 612, 690, 708
GlaI	GCGC	1 cut(s)	783
GluI	GCNGC	3 cut(s)	94, 313, 601
HaeIII	GGCC	4 cut(s)	93, 258, 312, 739
HapII	CCGG	2 cut(s)	722, 779
HhaI	GCGC	1 cut(s)	784
Hin1II	CATG	4 cut(s)	138, 245, 405, 517
Hin6I	GCGC	1 cut(s)	782
HinP1I	GCGC	1 cut(s)	782
HinfI	GANTC	1 cut(s)	616
HpaII	CCGG	2 cut(s)	722, 779
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188I	TCNGA	4 cut(s)	49, 361, 368, 621
Hpy188III	TCNNGA	7 cut(s)	167, 194, 530, 690, 702, 753, 765
Hpy8I	GTNNAC	1 cut(s)	8
Hpy99I	CGWCG	1 cut(s)	279
HpyAV	CCTTC	4 cut(s)	409, 467, 648, 741
HpyCH4III	ACNGT	2 cut(s)	45, 470
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	3 cut(s)	173, 182, 716
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 179, 309
HpyF3I	CTNAG	1 cut(s)	453
HpySE526I	ACGT	1 cut(s)	352
Hsp92II	CATG	4 cut(s)	138, 245, 405, 517
HspAI	GCGC	1 cut(s)	782
KspI	CCGCGG	1 cut(s)	316
LmnI	GCTCC	3 cut(s)	390, 621, 663
LpnPI	CCDG	8 cut(s)	238, 420, 721, 735, 748, 750, 774, 792
Lsp1109I	GCAGC	1 cut(s)	612
LweI	GCATC	3 cut(s)	160, 169, 725
MaeI	CTAG	4 cut(s)	267, 612, 690, 708
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	1 cut(s)	464
MboII	GAAGA	4 cut(s)	83, 127, 188, 384
MflI	RGATCY	3 cut(s)	117, 569, 704
MhlI	GDGCHC	2 cut(s)	260, 387
MluCI	AATT	6 cut(s)	110, 183, 362, 502, 548, 667
MlyI	GAGTC	1 cut(s)	625
MmeI	TCCRAC	1 cut(s)	599
MnlI	CCTC	8 cut(s)	58, 135, 141, 287, 299, 302, 448, 619
MseI	TTAA	3 cut(s)	224, 552, 585
MspA1I	CMGCKG	1 cut(s)	315
MspI	CCGG	2 cut(s)	722, 779
MspR9I	CCNGG	2 cut(s)	736, 779
MvaI	CCWGG	1 cut(s)	736
MvnI	CGCG	2 cut(s)	168, 315
MwoI	GCNNNNNNNGC	3 cut(s)	135, 179, 309
NciI	CCSGG	1 cut(s)	779
NcoI	CCATGG	1 cut(s)	241
NdeI	CATATG	1 cut(s)	423
NlaIII	CATG	4 cut(s)	138, 245, 405, 517
NlaIV	GGNNCC	3 cut(s)	257, 258, 386
NmuCI	GTSAC	1 cut(s)	464
NruI	TCGCGA	1 cut(s)	168
PkrI	GCNGC	3 cut(s)	95, 314, 602
PleI	GAGTC	1 cut(s)	624
PpsI	GAGTC	1 cut(s)	624
PsiI	TTATAA	1 cut(s)	498
Psp6I	CCWGG	1 cut(s)	734
PspGI	CCWGG	1 cut(s)	734
PspN4I	GGNNCC	3 cut(s)	257, 258, 386
PspOMI	GGGCCC	1 cut(s)	256
PspPI	GGNCC	2 cut(s)	256, 257
PsuI	RGATCY	3 cut(s)	117, 569, 704
RruI	TCGCGA	1 cut(s)	168
SacII	CCGCGG	1 cut(s)	316
SaqAI	TTAA	3 cut(s)	224, 552, 585
SatI	GCNGC	3 cut(s)	94, 313, 601
Sau96I	GGNCC	2 cut(s)	256, 257
SchI	GAGTC	1 cut(s)	625
ScrFI	CCNGG	2 cut(s)	736, 779
SduI	GDGCHC	2 cut(s)	260, 387
SfaNI	GCATC	3 cut(s)	160, 169, 725
SfcI	CTRYAG	1 cut(s)	139
Sfr303I	CCGCGG	1 cut(s)	316
SgrBI	CCGCGG	1 cut(s)	316
Sse9I	AATT	6 cut(s)	110, 183, 362, 502, 548, 667
SsiI	CCGC	4 cut(s)	94, 313, 315, 775
SspMI	CTAG	4 cut(s)	267, 612, 690, 708
StyD4I	CCNGG	2 cut(s)	734, 777
StyI	CCWWGG	2 cut(s)	241, 560
TaaI	ACNGT	2 cut(s)	45, 470
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	2 cut(s)	337, 752
TasI	AATT	6 cut(s)	110, 183, 362, 502, 548, 667
TauI	GCSGC	2 cut(s)	96, 315
Tru1I	TTAA	3 cut(s)	224, 552, 585
Tru9I	TTAA	3 cut(s)	224, 552, 585
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	1 cut(s)	600
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	3 cut(s)	390, 530, 609
TspRI	CASTG	1 cut(s)	475
XapI	RAATTY	2 cut(s)	362, 548
XbaI	TCTAGA	1 cut(s)	689
XspI	CTAG	4 cut(s)	267, 612, 690, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.