Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004906

Physical Location & Seq

Genomic Coordinates Forward (+)

20874887 .. 20877648

Gene Structure 2762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g23610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAGTGGCCGATTTTCTCGCACGATCTACGTTGGCAACCTTCCCTCAGATATAAAAGAATGGGAGGTTGAAGATCTATTCTACAAGTATGGCCGCATAGTGGATATTGAACTGAAGATTCCACCTCGTCCTCCATGTTATTCTTTTGTTGAGTTTGAGAGTTCTCGGGATGCAGAAGATGCAATCAGGGGGCGTGATGGGTATAACTTTGATGGGTGCCGTTTAAGGGTTGAACTTGCCCATGGTGGTAGGGGCCCATCTTCAAGTGATCGTCGTGGTGGATATGACCGAGGCAGCAGTGGCGGAGGCAGTGGTGGGGGACGATTTGGTGTTTCACGTCATTCTGAATATCGAGTTATTGTTCGTAATCTCCCTTCTTCAGCCTCGTGGCAAGACTTGAAGGATCATATGCGTAAAGCTGGTGATGTGTGTTTTGCTGAGGTTTCTCGTGACAGTGAAGGGACTTATGGCTTGGTCGATTATACAAATTCTGATGACATGAAATATGCTATCCGGAAGCTTGATGATACTGAATTCAAAAATCCTTGGGCAAGGACTCATATTCGGGTTAAATATTACGATAGGAGTCCCTCAAGGAGTCGAAGTAGAAGTCGTAGCAGAAGCCGAAGTGTGAGAAGGAATCGGAGCAAGTCGTTGGACCGATCTGTATCAAAATCAGTATCAAGATCAGTATCAAGATCAAGGTCTCCATCGCCGGTTAAATCTTCCAGGCCACGATCAATATCAAGGTCAAGGTCAAGGTCAAGGTCAGAATCACCCCTAGCGGCTCGGTCCGGTAGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

269

Amino Acids

30.29

Weight (kDa)

10.39

Isoelectric Point (pI)

83.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 76	7.3e-17	RNA recognition motif
RRM_1	PF00076	119 - 181	7.3e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430
fragaria_vesca	FvH4_7g32850 FvH4_7g32850
malus_domestica	MD01G1227800.v1.1 MD01G1227900.v1.1 MD07G1298400.v1.1
prunus_persica	Prupe.2G318200_v2.0.a1
pyrus_communis	pycom01g23610 pycom07g27080
rosa_chinensis	RchiOBHm_Chr1g0382791
rosa_laevigata	RLG00000026159
rosa_multiflora	Rmu_sc0002242.1_g000001 Rmu_sc0003389.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277900
rosa_rugosa	Rorug01G0435900.1 Rorug01G0436000 Rorug01G0436100 Rorug01G0436200 Rorug01G0436300
rosa_samantha	Rh1AG461200 Rh1BG417900 Rh1CG431700 Rh1DG450100
rosa_wichuraiana	Rw1G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	216
AccIII	TCCGGA	1 cut(s)	513
AciI	CCGC	3 cut(s)	94, 303, 785
AclWI	GGATC	1 cut(s)	411
AcoI	YGGCCR	2 cut(s)	7, 91
AcsI	RAATTY	2 cut(s)	487, 533
AcuI	CTGAAG	2 cut(s)	134, 363
AfiI	CCNNNNNNNGG	2 cut(s)	100, 226
AgsI	TTSAA	6 cut(s)	71, 110, 233, 264, 400, 538
AjiI	CACGTC	1 cut(s)	338
AjnI	CCWGG	1 cut(s)	728
AluBI	AGCT	2 cut(s)	419, 520
AluI	AGCT	2 cut(s)	419, 520
Alw26I	GTCTC	1 cut(s)	711
AlwI	GGATC	1 cut(s)	411
Ama87I	CYCGRG	1 cut(s)	165
Aor13HI	TCCGGA	1 cut(s)	513
AoxI	GGCC	4 cut(s)	7, 91, 253, 731
ApaI	GGGCCC	1 cut(s)	257
ApeKI	GCWGC	1 cut(s)	294
ApoI	RAATTY	2 cut(s)	487, 533
ArsI	GACNNNNNNTTYG	2 cut(s)	595, 627
AspS9I	GGNCC	4 cut(s)	253, 254, 658, 792
AsuHPI	GGTGA	2 cut(s)	434, 768
AvaI	CYCGRG	1 cut(s)	165
AvaII	GGWCC	2 cut(s)	658, 792
BaeGI	GKGCMC	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	257
BarI	GAAGNNNNNNTAC	2 cut(s)	358, 390
BauI	CACGAG	2 cut(s)	385, 447
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	1 cut(s)	306
BccI	CCATC	4 cut(s)	191, 206, 265, 718
BceAI	ACGGC	1 cut(s)	204
BciT130I	CCWGG	1 cut(s)	730
BcoDI	GTCTC	1 cut(s)	711
BfaI	CTAG	1 cut(s)	782
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	3 cut(s)	94, 295, 786
BlsI	GCNGC	3 cut(s)	95, 296, 787
Bme1390I	CCNGG	1 cut(s)	730
Bme18I	GGWCC	2 cut(s)	658, 792
BmeT110I	CYCGRG	1 cut(s)	165
BmgBI	CACGTC	1 cut(s)	338
BmgT120I	GGNCC	4 cut(s)	253, 254, 658, 792
BmiI	GGNNCC	3 cut(s)	218, 254, 255
BmrFI	CCNGG	1 cut(s)	730
BmsI	GCATC	2 cut(s)	160, 169
Bpu10I	CCTNAGC	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	577
BsaBI	GATNNNNATC	3 cut(s)	667, 691, 742
BsaI	GGTCTC	1 cut(s)	711
BsaJI	CCNNGG	3 cut(s)	241, 289, 545
BsaWI	WCCGGW	2 cut(s)	513, 794
BsaXI	ACNNNNNCTCC	2 cut(s)	589, 619
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 226
Bse118I	RCCGGY	1 cut(s)	715
Bse8I	GATNNNNATC	3 cut(s)	667, 691, 742
BseAI	TCCGGA	1 cut(s)	513
BseBI	CCWGG	1 cut(s)	730
BseDI	CCNNGG	3 cut(s)	241, 289, 545
BseGI	GGATG	1 cut(s)	175
BseJI	GATNNNNATC	3 cut(s)	667, 691, 742
BseLI	CCNNNNNNNGG	2 cut(s)	100, 226
BseMII	CTCAG	2 cut(s)	60, 429
BseSI	GKGCMC	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	306
BshFI	GGCC	4 cut(s)	9, 93, 255, 733
BshNI	GGYRCC	1 cut(s)	216
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	3 cut(s)	514, 716, 795
BslFI	GGGAC	3 cut(s)	333, 475, 573
BslI	CCNNNNNNNGG	2 cut(s)	100, 226
BsmAI	GTCTC	1 cut(s)	711
BsmFI	GGGAC	3 cut(s)	333, 475, 573
BsnI	GGCC	4 cut(s)	9, 93, 255, 733
Bso31I	GGTCTC	1 cut(s)	711
BsoBI	CYCGRG	1 cut(s)	165
Bsp120I	GGGCCC	1 cut(s)	253
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp13I	TCCGGA	1 cut(s)	513
Bsp143I	GATC	8 cut(s)	24, 73, 268, 403, 662, 686, 698, 737
Bsp19I	CCATGG	1 cut(s)	241
BspACI	CCGC	3 cut(s)	94, 303, 785
BspANI	GGCC	4 cut(s)	9, 93, 255, 733
BspCNI	CTCAG	2 cut(s)	59, 430
BspEI	TCCGGA	1 cut(s)	513
BspLI	GGNNCC	3 cut(s)	218, 254, 255
BspPI	GGATC	1 cut(s)	411
BspT107I	GGYRCC	1 cut(s)	216
BspTNI	GGTCTC	1 cut(s)	711
BsrFI	RCCGGY	1 cut(s)	715
BssAI	RCCGGY	1 cut(s)	715
BssECI	CCNNGG	3 cut(s)	241, 289, 545
BssMI	GATC	8 cut(s)	24, 73, 268, 403, 662, 686, 698, 737
BssSI	CACGAG	2 cut(s)	385, 447
BssT1I	CCWWGG	2 cut(s)	241, 545
Bst2BI	CACGAG	2 cut(s)	385, 447
Bst2UI	CCWGG	1 cut(s)	730
Bst4CI	ACNGT	1 cut(s)	455
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstDEI	CTNAG	2 cut(s)	46, 438
BstDSI	CCRYGG	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	8 cut(s)	27, 76, 271, 406, 665, 689, 701, 740
BstMAI	GTCTC	1 cut(s)	711
BstMBI	GATC	8 cut(s)	24, 73, 268, 403, 662, 686, 698, 737
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 300
BstNI	CCWGG	1 cut(s)	730
BstSCI	CCNGG	1 cut(s)	728
BstSLI	GKGCMC	1 cut(s)	257
BstV1I	GCAGC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	4 cut(s)	9, 93, 255, 733
BtgI	CCRYGG	1 cut(s)	241
BtgZI	GCGATG	1 cut(s)	696
BtrI	CACGTC	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	175
BtsI	GCAGTG	2 cut(s)	304, 316
BtsIMutI	CAGTG	3 cut(s)	304, 316, 460
Cfr10I	RCCGGY	1 cut(s)	715
Cfr13I	GGNCC	4 cut(s)	253, 254, 658, 792
CpoI	CGGWCCG	1 cut(s)	792
CspI	CGGWCCG	1 cut(s)	792
CviAII	CATG	3 cut(s)	135, 242, 499
DdeI	CTNAG	2 cut(s)	46, 438
DpnI	GATC	8 cut(s)	26, 75, 270, 405, 664, 688, 700, 739
DpnII	GATC	8 cut(s)	24, 73, 268, 403, 662, 686, 698, 737
EaeI	YGGCCR	2 cut(s)	7, 91
EciI	GGCGGA	1 cut(s)	318
Eco130I	CCWWGG	2 cut(s)	241, 545
Eco24I	GRGCYC	1 cut(s)	257
Eco31I	GGTCTC	1 cut(s)	711
Eco47I	GGWCC	2 cut(s)	658, 792
Eco57I	CTGAAG	2 cut(s)	134, 363
Eco88I	CYCGRG	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	253
EcoRI	GAATTC	1 cut(s)	533
EcoRII	CCWGG	1 cut(s)	728
EcoT14I	CCWWGG	2 cut(s)	241, 545
EcoT38I	GRGCYC	1 cut(s)	257
ErhI	CCWWGG	2 cut(s)	241, 545
FaeI	CATG	3 cut(s)	138, 245, 502
FaqI	GGGAC	3 cut(s)	333, 475, 573
FatI	CATG	3 cut(s)	134, 241, 498
FauNDI	CATATG	1 cut(s)	408
Fnu4HI	GCNGC	3 cut(s)	94, 295, 786
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	3 cut(s)	94, 295, 786
FspBI	CTAG	1 cut(s)	782
GluI	GCNGC	3 cut(s)	94, 295, 786
HaeIII	GGCC	4 cut(s)	9, 93, 255, 733
HapII	CCGG	3 cut(s)	514, 716, 795
Hin1II	CATG	3 cut(s)	138, 245, 502
HindIII	AAGCTT	1 cut(s)	518
HinfI	GANTC	6 cut(s)	118, 556, 586, 598, 640, 773
HpaII	CCGG	3 cut(s)	514, 716, 795
HphI	GGTGA	2 cut(s)	434, 768
Hpy188I	TCNGA	5 cut(s)	49, 346, 493, 645, 772
Hpy188III	TCNNGA	5 cut(s)	167, 449, 514, 684, 696
Hpy99I	CGWCG	1 cut(s)	276
HpyAV	CCTTC	5 cut(s)	50, 384, 394, 452, 630
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4IV	ACGT	2 cut(s)	30, 337
HpyCH4V	TGCA	2 cut(s)	173, 182
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 300
HpyF3I	CTNAG	2 cut(s)	46, 438
HpySE526I	ACGT	2 cut(s)	30, 337
Hsp92II	CATG	3 cut(s)	138, 245, 502
Kpn2I	TCCGGA	1 cut(s)	513
Kzo9I	GATC	8 cut(s)	24, 73, 268, 403, 662, 686, 698, 737
LmnI	GCTCC	1 cut(s)	645
LpnPI	CCDG	6 cut(s)	172, 405, 527, 715, 729, 742
Lsp1109I	GCAGC	1 cut(s)	306
LweI	GCATC	2 cut(s)	160, 169
MaeI	CTAG	1 cut(s)	782
MaeII	ACGT	2 cut(s)	30, 337
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	8 cut(s)	26, 75, 270, 405, 664, 688, 700, 739
MboI	GATC	8 cut(s)	24, 73, 268, 403, 662, 686, 698, 737
MboII	GAAGA	6 cut(s)	83, 127, 188, 252, 369, 717
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	257
MluCI	AATT	2 cut(s)	487, 533
MlyI	GAGTC	3 cut(s)	550, 595, 607
MmeI	TCCRAC	1 cut(s)	636
MnlI	CCTC	9 cut(s)	55, 58, 135, 141, 284, 299, 394, 433, 601
MroI	TCCGGA	1 cut(s)	513
MseI	TTAA	3 cut(s)	224, 570, 720
MspI	CCGG	3 cut(s)	514, 716, 795
MspR9I	CCNGG	1 cut(s)	730
MvaI	CCWGG	1 cut(s)	730
MwoI	GCNNNNNNNGC	2 cut(s)	179, 300
NcoI	CCATGG	1 cut(s)	241
NdeI	CATATG	1 cut(s)	408
NdeII	GATC	8 cut(s)	24, 73, 268, 403, 662, 686, 698, 737
NlaIII	CATG	3 cut(s)	138, 245, 502
NlaIV	GGNNCC	3 cut(s)	218, 254, 255
NmuCI	GTSAC	1 cut(s)	449
PfeI	GAWTC	3 cut(s)	118, 640, 773
PkrI	GCNGC	3 cut(s)	95, 296, 787
PleI	GAGTC	3 cut(s)	550, 594, 606
PpsI	GAGTC	3 cut(s)	550, 594, 606
Psp6I	CCWGG	1 cut(s)	728
PspGI	CCWGG	1 cut(s)	728
PspN4I	GGNNCC	3 cut(s)	218, 254, 255
PspOMI	GGGCCC	1 cut(s)	253
PspPI	GGNCC	4 cut(s)	253, 254, 658, 792
PsuI	RGATCY	1 cut(s)	73
Rsr2I	CGGWCCG	1 cut(s)	792
RsrII	CGGWCCG	1 cut(s)	792
SaqAI	TTAA	3 cut(s)	224, 570, 720
SatI	GCNGC	3 cut(s)	94, 295, 786
Sau3AI	GATC	8 cut(s)	24, 73, 268, 403, 662, 686, 698, 737
Sau96I	GGNCC	4 cut(s)	253, 254, 658, 792
SchI	GAGTC	3 cut(s)	550, 595, 607
ScrFI	CCNGG	1 cut(s)	730
SduI	GDGCHC	1 cut(s)	257
SfaNI	GCATC	2 cut(s)	160, 169
SinI	GGWCC	2 cut(s)	658, 792
SmlI	CTYRAG	1 cut(s)	592
SmoI	CTYRAG	1 cut(s)	592
Sse9I	AATT	2 cut(s)	487, 533
SsiI	CCGC	3 cut(s)	94, 303, 785
SspI	AATATT	1 cut(s)	575
SspMI	CTAG	1 cut(s)	782
StyD4I	CCNGG	1 cut(s)	728
StyI	CCWWGG	2 cut(s)	241, 545
TaaI	ACNGT	1 cut(s)	455
TaiI	ACGT	2 cut(s)	33, 340
TaqI	TCGA	3 cut(s)	352, 477, 601
TaqII	GACCGA	3 cut(s)	303, 675, 780
TasI	AATT	2 cut(s)	487, 533
TauI	GCSGC	2 cut(s)	96, 788
TfiI	GAWTC	3 cut(s)	118, 640, 773
Tru1I	TTAA	3 cut(s)	224, 570, 720
Tru9I	TTAA	3 cut(s)	224, 570, 720
TscAI	CASTG	3 cut(s)	304, 316, 460
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	1 cut(s)	294
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	1 cut(s)	515
TspRI	CASTG	3 cut(s)	304, 316, 460
VpaK11BI	GGWCC	2 cut(s)	658, 792
XapI	RAATTY	2 cut(s)	487, 533
XspI	CTAG	1 cut(s)	782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.