Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004906

Physical Location & Seq

Genomic Coordinates Forward (+)

29770510 .. 29774180

Gene Structure 3671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G318200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAGTGGTCGATTTTCTCGCACAATCTACGTTGGCAACCTACCCTCAGATATAAGAGAATCAGAGGTTGAAGAATTGTTCTATAAGTATGGCCGCATAGTGGATATTGAATTGAAGATTCCACCTCGCCCTCCGTGTTATTCGTTTGTTGAGTTTGAGAGTTCTCGTGATGCAGAAGATGCAATCAGAGGGCGTGATGGGTATAACTTTGACGGTTGCCGTTTAAGGGTGGAGCTTGCCCATGGTGGTAGGGGCCCATCTTCAAGCGATCGTCGTGGTGGATATGACAGAGGCAGCAGTGGTGGAGGTAGCGGTGGTGGTCGCTTTGGTGCTTCACGTCATTCTGAATATAGGGTTATTGTTCGTGGCCTCCCTTCTTCTGCTTCATGGCAAGACCTGAAGGACCATATGCGAAAAGCTGGTGATGTGTGTTTTGCTGAGGTTTCTCGTGACAGCGAAGGGACTTATGGTCTAGTTGATTATACCAATTCTGATGACATGAAATATGCTATTCGGAAACTTGATGATACAGAATTTAAAAATCCTTGGACAAGATCTTATATTCGGGTTAAATTGTACGAGAGCAGTCCGTCAAGGAGCCGGAGTAGAAGTCGTAGCAGAAGCAGAAGTGTGAGAAGGAATCAGAGTAAGTCTCGGGACCGATCCGTCTCAAGATCAGTATCAAGATCTAGGTCTGCATCACCTGTCAAATCCTCCAGGCCAAGATCAAGGTCAGGGTCAGAATCTCCCCGTCCGGTGCGGTCGGGTAGCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

259

Amino Acids

28.97

Weight (kDa)

10.2

Isoelectric Point (pI)

78.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430
fragaria_vesca	FvH4_7g32850 FvH4_7g32850
malus_domestica	MD01G1227800.v1.1 MD01G1227900.v1.1 MD07G1298400.v1.1
prunus_persica	Prupe.2G318200_v2.0.a1
pyrus_communis	pycom01g23610 pycom07g27080
rosa_chinensis	RchiOBHm_Chr1g0382791
rosa_laevigata	RLG00000026159
rosa_multiflora	Rmu_sc0002242.1_g000001 Rmu_sc0003389.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277900
rosa_rugosa	Rorug01G0435900.1 Rorug01G0436000 Rorug01G0436100 Rorug01G0436200 Rorug01G0436300
rosa_samantha	Rh1AG461200 Rh1BG417900 Rh1CG431700 Rh1DG450100
rosa_wichuraiana	Rw1G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	665
AciI	CCGC	4 cut(s)	94, 312, 760, 771
AclWI	GGATC	1 cut(s)	657
AcoI	YGGCCR	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	533
AcuI	CTGAAG	1 cut(s)	419
AfaI	GTAC	1 cut(s)	578
AfiI	CCNNNNNNNGG	2 cut(s)	100, 226
AgsI	TTSAA	4 cut(s)	71, 110, 115, 264
AhdI	GACNNNNNGTC	1 cut(s)	468
AjiI	CACGTC	1 cut(s)	338
AjnI	CCWGG	1 cut(s)	716
AluBI	AGCT	2 cut(s)	235, 419
AluI	AGCT	2 cut(s)	235, 419
Alw26I	GTCTC	2 cut(s)	657, 673
AlwI	GGATC	1 cut(s)	657
Ama87I	CYCGRG	1 cut(s)	654
AoxI	GGCC	4 cut(s)	91, 253, 367, 719
ApaI	GGGCCC	1 cut(s)	257
ApeKI	GCWGC	1 cut(s)	294
ApoI	RAATTY	1 cut(s)	533
AspS9I	GGNCC	4 cut(s)	253, 254, 403, 658
AsuHPI	GGTGA	2 cut(s)	434, 693
AvaI	CYCGRG	1 cut(s)	654
AvaII	GGWCC	2 cut(s)	403, 658
BaeGI	GKGCMC	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	257
BauI	CACGAG	2 cut(s)	165, 447
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	1 cut(s)	306
BccI	CCATC	2 cut(s)	191, 265
BceAI	ACGGC	1 cut(s)	204
BciT130I	CCWGG	1 cut(s)	718
BcoDI	GTCTC	2 cut(s)	657, 673
BfaI	CTAG	2 cut(s)	473, 690
BglII	AGATCT	2 cut(s)	554, 686
BisI	GCNGC	3 cut(s)	94, 295, 772
BlsI	GCNGC	3 cut(s)	95, 296, 773
Bme1390I	CCNGG	1 cut(s)	718
Bme18I	GGWCC	2 cut(s)	403, 658
BmeRI	GACNNNNNGTC	1 cut(s)	468
BmeT110I	CYCGRG	1 cut(s)	654
BmgBI	CACGTC	1 cut(s)	338
BmgT120I	GGNCC	4 cut(s)	253, 254, 403, 658
BmiI	GGNNCC	4 cut(s)	254, 255, 599, 659
BmrFI	CCNGG	1 cut(s)	718
BmsI	GCATC	3 cut(s)	160, 169, 707
BplI	GAGNNNNNCTC	2 cut(s)	637, 669
BpmI	CTGGAG	1 cut(s)	700
Bpu10I	CCTNAGC	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	655
BsaBI	GATNNNNATC	1 cut(s)	679
BsaJI	CCNNGG	2 cut(s)	241, 545
BsaWI	WCCGGW	1 cut(s)	754
BsaXI	ACNNNNNCTCC	4 cut(s)	589, 595, 619, 625
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 226
Bse8I	GATNNNNATC	1 cut(s)	679
BseBI	CCWGG	1 cut(s)	718
BseDI	CCNNGG	2 cut(s)	241, 545
BseJI	GATNNNNATC	1 cut(s)	679
BseLI	CCNNNNNNNGG	2 cut(s)	100, 226
BseMII	CTCAG	2 cut(s)	60, 429
BseSI	GKGCMC	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	306
Bsh1285I	CGRYCG	2 cut(s)	271, 764
BshFI	GGCC	4 cut(s)	93, 255, 369, 721
BsiEI	CGRYCG	2 cut(s)	271, 764
BsiHKCI	CYCGRG	1 cut(s)	654
BsiSI	CCGG	2 cut(s)	601, 755
BslFI	GGGAC	2 cut(s)	475, 671
BslI	CCNNNNNNNGG	2 cut(s)	100, 226
BsmAI	GTCTC	2 cut(s)	657, 673
BsmBI	CGTCTC	1 cut(s)	673
BsmFI	GGGAC	2 cut(s)	475, 671
BsnI	GGCC	4 cut(s)	93, 255, 369, 721
BsoBI	CYCGRG	1 cut(s)	654
Bsp120I	GGGCCC	1 cut(s)	253
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp143I	GATC	6 cut(s)	268, 554, 662, 674, 686, 725
Bsp19I	CCATGG	1 cut(s)	241
BspACI	CCGC	4 cut(s)	94, 312, 760, 771
BspANI	GGCC	4 cut(s)	93, 255, 369, 721
BspCNI	CTCAG	2 cut(s)	59, 430
BspLI	GGNNCC	4 cut(s)	254, 255, 599, 659
BspPI	GGATC	1 cut(s)	657
BssECI	CCNNGG	2 cut(s)	241, 545
BssMI	GATC	6 cut(s)	268, 554, 662, 674, 686, 725
BssSI	CACGAG	2 cut(s)	165, 447
BssT1I	CCWWGG	2 cut(s)	241, 545
Bst2BI	CACGAG	2 cut(s)	165, 447
Bst2UI	CCWGG	1 cut(s)	718
Bst4CI	ACNGT	1 cut(s)	215
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	2 cut(s)	46, 438
BstDSI	CCRYGG	1 cut(s)	241
BstKTI	GATC	6 cut(s)	271, 557, 665, 677, 689, 728
BstMAI	GTCTC	2 cut(s)	657, 673
BstMBI	GATC	6 cut(s)	268, 554, 662, 674, 686, 725
BstMCI	CGRYCG	2 cut(s)	271, 764
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	1 cut(s)	718
BstSCI	CCNGG	1 cut(s)	716
BstSLI	GKGCMC	1 cut(s)	257
BstV1I	GCAGC	1 cut(s)	306
BstX2I	RGATCY	2 cut(s)	554, 686
BstYI	RGATCY	2 cut(s)	554, 686
BsuRI	GGCC	4 cut(s)	93, 255, 369, 721
BtgI	CCRYGG	1 cut(s)	241
BtrI	CACGTC	1 cut(s)	338
BtsI	GCAGTG	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	237
Cfr13I	GGNCC	4 cut(s)	253, 254, 403, 658
Csp6I	GTAC	1 cut(s)	577
CviAII	CATG	3 cut(s)	242, 387, 499
CviJI	RGCY	8 cut(s)	93, 235, 255, 369, 419, 600, 721, 774
CviKI_1	RGCY	8 cut(s)	93, 235, 255, 369, 419, 600, 721, 774
CviQI	GTAC	1 cut(s)	577
DdeI	CTNAG	2 cut(s)	46, 438
DpnI	GATC	6 cut(s)	270, 556, 664, 676, 688, 727
DpnII	GATC	6 cut(s)	268, 554, 662, 674, 686, 725
DraI	TTTAAA	1 cut(s)	538
DrdI	GACNNNNNNGTC	1 cut(s)	665
DriI	GACNNNNNGTC	1 cut(s)	468
DseDI	GACNNNNNNGTC	1 cut(s)	665
EaeI	YGGCCR	1 cut(s)	91
Eam1105I	GACNNNNNGTC	1 cut(s)	468
Eco130I	CCWWGG	2 cut(s)	241, 545
Eco24I	GRGCYC	1 cut(s)	257
Eco47I	GGWCC	2 cut(s)	403, 658
Eco57I	CTGAAG	1 cut(s)	419
Eco88I	CYCGRG	1 cut(s)	654
EcoO109I	RGGNCCY	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	716
EcoT14I	CCWWGG	2 cut(s)	241, 545
EcoT38I	GRGCYC	1 cut(s)	257
ErhI	CCWWGG	2 cut(s)	241, 545
Esp3I	CGTCTC	1 cut(s)	673
FaeI	CATG	3 cut(s)	245, 390, 502
FaqI	GGGAC	2 cut(s)	475, 671
FatI	CATG	3 cut(s)	241, 386, 498
FauNDI	CATATG	1 cut(s)	408
Fnu4HI	GCNGC	3 cut(s)	94, 295, 772
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	3 cut(s)	94, 295, 772
FspBI	CTAG	2 cut(s)	473, 690
GluI	GCNGC	3 cut(s)	94, 295, 772
GsuI	CTGGAG	1 cut(s)	700
HaeIII	GGCC	4 cut(s)	93, 255, 369, 721
HapII	CCGG	2 cut(s)	601, 755
Hin1II	CATG	3 cut(s)	245, 390, 502
HinfI	GANTC	4 cut(s)	59, 118, 640, 743
HpaII	CCGG	2 cut(s)	601, 755
HphI	GGTGA	2 cut(s)	434, 693
Hpy188I	TCNGA	8 cut(s)	49, 64, 188, 346, 493, 516, 645, 742
Hpy188III	TCNNGA	5 cut(s)	167, 449, 656, 672, 684
Hpy99I	CGWCG	1 cut(s)	276
HpyAV	CCTTC	4 cut(s)	384, 394, 452, 630
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4IV	ACGT	2 cut(s)	30, 337
HpyCH4V	TGCA	3 cut(s)	173, 182, 698
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	2 cut(s)	46, 438
HpySE526I	ACGT	2 cut(s)	30, 337
Hsp92II	CATG	3 cut(s)	245, 390, 502
Kzo9I	GATC	6 cut(s)	268, 554, 662, 674, 686, 725
LmnI	GCTCC	2 cut(s)	232, 597
LpnPI	CCDG	8 cut(s)	405, 410, 614, 703, 717, 720, 730, 768
Lsp1109I	GCAGC	1 cut(s)	306
LweI	GCATC	3 cut(s)	160, 169, 707
MaeI	CTAG	2 cut(s)	473, 690
MaeII	ACGT	2 cut(s)	30, 337
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	6 cut(s)	270, 556, 664, 676, 688, 727
MboI	GATC	6 cut(s)	268, 554, 662, 674, 686, 725
MboII	GAAGA	5 cut(s)	83, 127, 188, 252, 369
MflI	RGATCY	2 cut(s)	554, 686
MhlI	GDGCHC	1 cut(s)	257
MluCI	AATT	5 cut(s)	74, 110, 487, 533, 572
MseI	TTAA	3 cut(s)	224, 537, 570
MspI	CCGG	2 cut(s)	601, 755
MspR9I	CCNGG	1 cut(s)	718
MvaI	CCWGG	1 cut(s)	718
MwoI	GCNNNNNNNGC	1 cut(s)	179
NcoI	CCATGG	1 cut(s)	241
NdeI	CATATG	1 cut(s)	408
NdeII	GATC	6 cut(s)	268, 554, 662, 674, 686, 725
NlaIII	CATG	3 cut(s)	245, 390, 502
NlaIV	GGNNCC	4 cut(s)	254, 255, 599, 659
NmuCI	GTSAC	1 cut(s)	449
PfeI	GAWTC	4 cut(s)	59, 118, 640, 743
PkrI	GCNGC	3 cut(s)	95, 296, 773
Ple19I	CGATCG	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	716
PspGI	CCWGG	1 cut(s)	716
PspN4I	GGNNCC	4 cut(s)	254, 255, 599, 659
PspOMI	GGGCCC	1 cut(s)	253
PspPI	GGNCC	4 cut(s)	253, 254, 403, 658
PsuI	RGATCY	2 cut(s)	554, 686
PvuI	CGATCG	1 cut(s)	271
RsaI	GTAC	1 cut(s)	578
RsaNI	GTAC	1 cut(s)	577
SaqAI	TTAA	3 cut(s)	224, 537, 570
SatI	GCNGC	3 cut(s)	94, 295, 772
Sau3AI	GATC	6 cut(s)	268, 554, 662, 674, 686, 725
Sau96I	GGNCC	4 cut(s)	253, 254, 403, 658
ScrFI	CCNGG	1 cut(s)	718
SduI	GDGCHC	1 cut(s)	257
SfaNI	GCATC	3 cut(s)	160, 169, 707
SinI	GGWCC	2 cut(s)	403, 658
SmlI	CTYRAG	1 cut(s)	670
SmoI	CTYRAG	1 cut(s)	670
Sse9I	AATT	5 cut(s)	74, 110, 487, 533, 572
SsiI	CCGC	4 cut(s)	94, 312, 760, 771
SspMI	CTAG	2 cut(s)	473, 690
StyD4I	CCNGG	1 cut(s)	716
StyI	CCWWGG	2 cut(s)	241, 545
TaaI	ACNGT	1 cut(s)	215
TaiI	ACGT	2 cut(s)	33, 340
TaqI	TCGA	1 cut(s)	10
TaqII	GACCGA	1 cut(s)	675
TasI	AATT	5 cut(s)	74, 110, 487, 533, 572
TauI	GCSGC	2 cut(s)	96, 774
TfiI	GAWTC	4 cut(s)	59, 118, 640, 743
Tru1I	TTAA	3 cut(s)	224, 537, 570
Tru9I	TTAA	3 cut(s)	224, 537, 570
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	1 cut(s)	294
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	2 cut(s)	375, 515
TspGWI	ACGGA	3 cut(s)	123, 579, 655
TspRI	CASTG	1 cut(s)	304
VpaK11BI	GGWCC	2 cut(s)	403, 658
XapI	RAATTY	1 cut(s)	533
XspI	CTAG	2 cut(s)	473, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.