Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004906

Physical Location & Seq

Genomic Coordinates Reverse (-)

53535445 .. 53536136

Gene Structure 692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0436300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCTCTGAAAACCATAAAAGCTTCATCCATGGCGGACGCAGCTTCATGGTACTGCGCTACAATTCTACTAGCCCTAATCCTTCTGGCTTCTATAAGAGAGAGCTCGAATTCCACGACAGACGATGATTCCGTCCGAGGGAAACAGTTCTTGCGGACGAACCGTCCCTGCGACGAAATCTATGTCGTCGGAGAAGGTGAGACCCTCCACACCATCAGTGACAAGTGCGGTGACCCGTTCATCGTGGAGCGCAACCCGCATATCCATGACCCGGATGATGTTTTCCCCGGACTCGTCATCAAGATCACTCCTAGTTCCAAACACTCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

110

Amino Acids

12.06

Weight (kDa)

5.42

Isoelectric Point (pI)

31.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430
fragaria_vesca	FvH4_7g32850 FvH4_7g32850
malus_domestica	MD01G1227800.v1.1 MD01G1227900.v1.1 MD07G1298400.v1.1
prunus_persica	Prupe.2G318200_v2.0.a1
pyrus_communis	pycom01g23610 pycom07g27080
rosa_chinensis	RchiOBHm_Chr1g0382791
rosa_laevigata	RLG00000026159
rosa_multiflora	Rmu_sc0002242.1_g000001 Rmu_sc0003389.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277900
rosa_rugosa	Rorug01G0435900.1 Rorug01G0436000 Rorug01G0436100 Rorug01G0436200 Rorug01G0436300
rosa_samantha	Rh1AG461200 Rh1BG417900 Rh1CG431700 Rh1DG450100
rosa_wichuraiana	Rw1G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	35, 154, 228, 257
AcsI	RAATTY	1 cut(s)	109
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	138, 271
AhdI	GACNNNNNGTC	1 cut(s)	162
AluBI	AGCT	3 cut(s)	23, 44, 105
AluI	AGCT	3 cut(s)	23, 44, 105
Alw21I	GWGCWC	1 cut(s)	107
Alw26I	GTCTC	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	109
ArsI	GACNNNNNNTTYG	2 cut(s)	168, 200
Asp700I	GAANNNNTTC	1 cut(s)	146
AspLEI	GCGC	2 cut(s)	59, 252
AsuC2I	CCSGG	2 cut(s)	272, 288
AsuHPI	GGTGA	2 cut(s)	209, 242
BanII	GRGCYC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	107
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	1 cut(s)	221
BcnI	CCSGG	2 cut(s)	272, 288
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	2 cut(s)	71, 312
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
Bme1390I	CCNGG	2 cut(s)	272, 288
BmeRI	GACNNNNNGTC	1 cut(s)	162
BmrFI	CCNGG	2 cut(s)	272, 288
BpuMI	CCSGG	2 cut(s)	272, 288
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	3 cut(s)	30, 136, 286
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 271
BseDI	CCNNGG	3 cut(s)	30, 136, 286
BseGI	GGATG	2 cut(s)	26, 280
BseLI	CCNNNNNNNGG	2 cut(s)	138, 271
BseXI	GCAGC	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	107
BsiSI	CCGG	2 cut(s)	272, 288
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	2 cut(s)	138, 271
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	150
Bso31I	GGTCTC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	1 cut(s)	303
Bsp19I	CCATGG	1 cut(s)	30
BspACI	CCGC	4 cut(s)	35, 154, 228, 257
BspTNI	GGTCTC	1 cut(s)	194
BssECI	CCNNGG	3 cut(s)	30, 136, 286
BssMI	GATC	1 cut(s)	303
BssT1I	CCWWGG	1 cut(s)	30
Bst4CI	ACNGT	2 cut(s)	147, 164
BstDSI	CCRYGG	1 cut(s)	30
BstEII	GGTNACC	1 cut(s)	230
BstF5I	GGATG	2 cut(s)	26, 280
BstHHI	GCGC	2 cut(s)	59, 252
BstKTI	GATC	1 cut(s)	306
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	1 cut(s)	303
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 256
BstPI	GGTNACC	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	270, 286
BstV1I	GCAGC	1 cut(s)	53
BtgI	CCRYGG	1 cut(s)	30
BtsCI	GGATG	2 cut(s)	26, 280
BtsIMutI	CAGTG	1 cut(s)	223
CfoI	GCGC	2 cut(s)	59, 252
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	3 cut(s)	31, 48, 266
CviJI	RGCY	6 cut(s)	5, 23, 44, 74, 89, 105
CviKI_1	RGCY	6 cut(s)	5, 23, 44, 74, 89, 105
CviQI	GTAC	1 cut(s)	52
DpnI	GATC	1 cut(s)	305
DpnII	GATC	1 cut(s)	303
DriI	GACNNNNNGTC	1 cut(s)	162
Eam1105I	GACNNNNNGTC	1 cut(s)	162
EciI	GGCGGA	1 cut(s)	50
Ecl136II	GAGCTC	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	107
Eco31I	GGTCTC	1 cut(s)	194
Eco53kI	GAGCTC	1 cut(s)	105
Eco91I	GGTNACC	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	105
EcoO65I	GGTNACC	1 cut(s)	230
EcoRI	GAATTC	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	3 cut(s)	34, 51, 269
FaiI	YATR	7 cut(s)	17, 32, 49, 95, 183, 261, 267
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	3 cut(s)	30, 47, 265
FauI	CCCGC	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	2 cut(s)	13, 287
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	2 cut(s)	71, 312
GlaI	GCGC	2 cut(s)	58, 251
GluI	GCNGC	1 cut(s)	42
HapII	CCGG	2 cut(s)	272, 288
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	2 cut(s)	59, 252
Hin1II	CATG	3 cut(s)	34, 51, 269
Hin6I	GCGC	2 cut(s)	57, 250
HinP1I	GCGC	2 cut(s)	57, 250
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	2 cut(s)	128, 291
HpaII	CCGG	2 cut(s)	272, 288
HphI	GGTGA	2 cut(s)	209, 242
Hpy188I	TCNGA	3 cut(s)	9, 137, 191
Hpy188III	TCNNGA	1 cut(s)	301
Hpy99I	CGWCG	2 cut(s)	176, 191
HpyAV	CCTTC	2 cut(s)	92, 188
HpyCH4III	ACNGT	2 cut(s)	147, 164
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 256
Hsp92II	CATG	3 cut(s)	34, 51, 269
HspAI	GCGC	2 cut(s)	57, 250
Kzo9I	GATC	1 cut(s)	303
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	4 cut(s)	71, 181, 285, 301
Lsp1109I	GCAGC	1 cut(s)	53
MaeI	CTAG	2 cut(s)	71, 312
MaeIII	GTNAC	2 cut(s)	218, 230
MalI	GATC	1 cut(s)	305
MboI	GATC	1 cut(s)	303
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	3 cut(s)	63, 109, 328
MlyI	GAGTC	1 cut(s)	285
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	2 cut(s)	131, 215
MroXI	GAANNNNTTC	1 cut(s)	146
MslI	CAYNNNNRTG	1 cut(s)	264
MspI	CCGG	2 cut(s)	272, 288
MspR9I	CCNGG	2 cut(s)	272, 288
MwoI	GCNNNNNNNGC	2 cut(s)	41, 256
NciI	CCSGG	2 cut(s)	272, 288
NcoI	CCATGG	1 cut(s)	30
NdeII	GATC	1 cut(s)	303
NlaIII	CATG	3 cut(s)	34, 51, 269
NmuCI	GTSAC	2 cut(s)	218, 230
PcsI	WCGNNNNNNNCGW	2 cut(s)	113, 129
PdmI	GAANNNNTTC	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	107
PspEI	GGTNACC	1 cut(s)	230
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	264
SacI	GAGCTC	1 cut(s)	107
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	303
SchI	GAGTC	1 cut(s)	285
ScrFI	CCNGG	2 cut(s)	272, 288
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	4 cut(s)	25, 46, 107, 199
SmiMI	CAYNNNNRTG	1 cut(s)	264
Sse9I	AATT	3 cut(s)	63, 109, 328
SsiI	CCGC	4 cut(s)	35, 154, 228, 257
SspMI	CTAG	2 cut(s)	71, 312
SstI	GAGCTC	1 cut(s)	107
StyD4I	CCNGG	2 cut(s)	270, 286
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	2 cut(s)	147, 164
TaqI	TCGA	1 cut(s)	107
TasI	AATT	3 cut(s)	63, 109, 328
TfiI	GAWTC	1 cut(s)	128
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	2 cut(s)	218, 230
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	2 cut(s)	218, 230
TspDTI	ATGAA	3 cut(s)	15, 36, 229
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	1 cut(s)	223
XapI	RAATTY	1 cut(s)	109
XmnI	GAANNNNTTC	1 cut(s)	146
XspI	CTAG	2 cut(s)	71, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.