Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004906

Physical Location & Seq

Genomic Coordinates Reverse (-)

53515888 .. 53516343

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0436000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGATCACGAGCTTTAGCTTTGGGTTTGTTGGCTTTGCGGTTGATGAACTTGGGCTTACCTCGCAAGGTGTCCAACACATAGACCTTGGAAGTCCGATGTCGTTGCGGAAGTTGAAGTCCGCCGGCCAAAACAATCTGAGATCCAAACACACCGAAACCCATCTAGTGGGGAACGTCGTTGCCTTGAAGAAAATCAACTTCTCGCAGGATATGGTCTTGGACTTTGGTTGGTGGAGATCCCATAGCTTTGATTGGTGGAGATCTGGAAAAAGAGATGGTAATCGGAGTATCGGAAAAGGAGAGCAACTCGGTCAAGTTGATGGCCTGGACACTGTAACACTGTGTACGCACGCTCTTGTCCCTATATTTCTCCATGCTACATATATACAGCGACTTGGTCGAGACCCAATCCGCCTCAGCCTCCATGGCCTTCGAATTCCGACGCTCAGACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

151

Amino Acids

16.91

Weight (kDa)

10.0

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430
fragaria_vesca	FvH4_7g32850 FvH4_7g32850
malus_domestica	MD01G1227800.v1.1 MD01G1227900.v1.1 MD07G1298400.v1.1
prunus_persica	Prupe.2G318200_v2.0.a1
pyrus_communis	pycom01g23610 pycom07g27080
rosa_chinensis	RchiOBHm_Chr1g0382791
rosa_laevigata	RLG00000026159
rosa_multiflora	Rmu_sc0002242.1_g000001 Rmu_sc0003389.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277900
rosa_rugosa	Rorug01G0435900.1 Rorug01G0436000 Rorug01G0436100 Rorug01G0436200 Rorug01G0436300
rosa_samantha	Rh1AG461200 Rh1BG417900 Rh1CG431700 Rh1DG450100
rosa_wichuraiana	Rw1G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	166
AciI	CCGC	4 cut(s)	38, 106, 120, 412
AclWI	GGATC	2 cut(s)	135, 231
AcoI	YGGCCR	1 cut(s)	124
AcsI	RAATTY	1 cut(s)	435
AfaI	GTAC	1 cut(s)	346
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	2 cut(s)	115, 187
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	3 cut(s)	12, 18, 246
AluI	AGCT	3 cut(s)	12, 18, 246
Alw26I	GTCTC	1 cut(s)	396
AlwI	GGATC	2 cut(s)	135, 231
AoxI	GGCC	3 cut(s)	124, 322, 427
ApoI	RAATTY	1 cut(s)	435
AsuII	TTCGAA	1 cut(s)	433
BauI	CACGAG	1 cut(s)	7
BbvCI	CCTCAGC	1 cut(s)	416
BccI	CCATC	3 cut(s)	168, 269, 314
BcgI	CGANNNNNNTGC	2 cut(s)	85, 119
BciT130I	CCWGG	1 cut(s)	326
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	396
BfaI	CTAG	1 cut(s)	164
BglI	GCCNNNNNGGC	1 cut(s)	426
BglII	AGATCT	1 cut(s)	260
Bme1390I	CCNGG	1 cut(s)	326
BmrFI	CCNGG	1 cut(s)	326
BplI	GAGNNNNNCTC	2 cut(s)	291, 323
Bpu10I	CCTNAGC	1 cut(s)	416
Bpu14I	TTCGAA	1 cut(s)	433
BsaBI	GATNNNNATC	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	396
BsaJI	CCNNGG	2 cut(s)	85, 424
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse118I	RCCGGY	1 cut(s)	122
Bse8I	GATNNNNATC	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	2 cut(s)	85, 424
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	2 cut(s)	128, 430
BshFI	GGCC	3 cut(s)	126, 324, 429
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	344
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	396
BsmFI	GGGAC	1 cut(s)	344
BsnI	GGCC	3 cut(s)	126, 324, 429
Bso31I	GGTCTC	1 cut(s)	396
Bsp119I	TTCGAA	1 cut(s)	433
Bsp143I	GATC	4 cut(s)	3, 140, 236, 260
Bsp19I	CCATGG	1 cut(s)	424
BspACI	CCGC	4 cut(s)	38, 106, 120, 412
BspANI	GGCC	3 cut(s)	126, 324, 429
BspCNI	CTCAG	2 cut(s)	129, 429
BspPI	GGATC	2 cut(s)	135, 231
BspT104I	TTCGAA	1 cut(s)	433
BspTNI	GGTCTC	1 cut(s)	396
BsrFI	RCCGGY	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	85, 424
BssMI	GATC	4 cut(s)	3, 140, 236, 260
BssSI	CACGAG	1 cut(s)	7
BssT1I	CCWWGG	2 cut(s)	85, 424
Bst2BI	CACGAG	1 cut(s)	7
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	2 cut(s)	334, 342
BstBI	TTCGAA	1 cut(s)	433
BstC8I	GCNNGC	2 cut(s)	124, 351
BstDEI	CTNAG	3 cut(s)	137, 416, 446
BstDSI	CCRYGG	1 cut(s)	424
BstKTI	GATC	4 cut(s)	6, 143, 239, 263
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	4 cut(s)	3, 140, 236, 260
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 426
BstNI	CCWGG	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	324
BstX2I	RGATCY	3 cut(s)	140, 236, 260
BstYI	RGATCY	3 cut(s)	140, 236, 260
BsuRI	GGCC	3 cut(s)	126, 324, 429
BtgI	CCRYGG	1 cut(s)	424
BtsIMutI	CAGTG	2 cut(s)	330, 338
Cac8I	GCNNGC	2 cut(s)	124, 351
Cfr10I	RCCGGY	1 cut(s)	122
CseI	GACGC	1 cut(s)	451
Csp6I	GTAC	1 cut(s)	345
CviAII	CATG	2 cut(s)	374, 425
CviJI	RGCY	9 cut(s)	12, 18, 33, 55, 126, 246, 324, 420, 429
CviKI_1	RGCY	9 cut(s)	12, 18, 33, 55, 126, 246, 324, 420, 429
CviQI	GTAC	1 cut(s)	345
DdeI	CTNAG	3 cut(s)	137, 416, 446
DpnI	GATC	4 cut(s)	5, 142, 238, 262
DpnII	GATC	4 cut(s)	3, 140, 236, 260
EaeI	YGGCCR	1 cut(s)	124
EciI	GGCGGA	2 cut(s)	109, 401
Eco130I	CCWWGG	2 cut(s)	85, 424
Eco31I	GGTCTC	1 cut(s)	396
EcoRI	GAATTC	1 cut(s)	435
EcoRII	CCWGG	1 cut(s)	324
EcoT14I	CCWWGG	2 cut(s)	85, 424
ErhI	CCWWGG	2 cut(s)	85, 424
FaeI	CATG	2 cut(s)	377, 428
FaiI	YATR	9 cut(s)	80, 212, 243, 365, 375, 382, 384, 386, 426
FaqI	GGGAC	1 cut(s)	344
FatI	CATG	2 cut(s)	373, 424
FbaI	TGATCA	1 cut(s)	3
FspBI	CTAG	1 cut(s)	164
HaeIII	GGCC	3 cut(s)	126, 324, 429
HapII	CCGG	1 cut(s)	123
HgaI	GACGC	1 cut(s)	451
Hin1II	CATG	2 cut(s)	377, 428
HpaII	CCGG	1 cut(s)	123
Hpy166II	GTNNAC	1 cut(s)	345
Hpy188I	TCNGA	6 cut(s)	96, 138, 285, 293, 441, 449
Hpy188III	TCNNGA	3 cut(s)	7, 264, 401
Hpy8I	GTNNAC	1 cut(s)	345
Hpy99I	CGWCG	2 cut(s)	179, 445
HpyAV	CCTTC	1 cut(s)	440
HpyCH4III	ACNGT	2 cut(s)	334, 342
HpyCH4IV	ACGT	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 426
HpyF3I	CTNAG	3 cut(s)	137, 416, 446
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	377, 428
KroI	GCCGGC	1 cut(s)	122
KroNI	GCCGGC	1 cut(s)	124
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 140, 236, 260
LpnPI	CCDG	5 cut(s)	136, 191, 249, 311, 338
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	4 cut(s)	5, 142, 238, 262
MboI	GATC	4 cut(s)	3, 140, 236, 260
MboII	GAAGA	1 cut(s)	199
MflI	RGATCY	3 cut(s)	140, 236, 260
MluCI	AATT	1 cut(s)	435
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	3 cut(s)	70, 425, 431
MroNI	GCCGGC	1 cut(s)	122
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	2 cut(s)	61, 426
NaeI	GCCGGC	1 cut(s)	124
NcoI	CCATGG	1 cut(s)	424
NdeII	GATC	4 cut(s)	3, 140, 236, 260
NgoMIV	GCCGGC	1 cut(s)	122
NlaIII	CATG	2 cut(s)	377, 428
NspV	TTCGAA	1 cut(s)	433
PdiI	GCCGGC	1 cut(s)	124
PflFI	GACNNNGTC	1 cut(s)	396
PflMI	CCANNNNNTGG	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PsuI	RGATCY	3 cut(s)	140, 236, 260
PsyI	GACNNNGTC	1 cut(s)	396
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
Sau3AI	GATC	4 cut(s)	3, 140, 236, 260
ScrFI	CCNGG	1 cut(s)	326
SetI	ASST	7 cut(s)	14, 20, 62, 70, 87, 177, 248
SfuI	TTCGAA	1 cut(s)	433
Sse9I	AATT	1 cut(s)	435
SsiI	CCGC	4 cut(s)	38, 106, 120, 412
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	324
StyI	CCWWGG	2 cut(s)	85, 424
TaaI	ACNGT	2 cut(s)	334, 342
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	2 cut(s)	400, 433
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	1 cut(s)	435
TscAI	CASTG	2 cut(s)	337, 345
TspDTI	ATGAA	1 cut(s)	60
TspRI	CASTG	2 cut(s)	337, 345
Tth111I	GACNNNGTC	1 cut(s)	396
Van91I	CCANNNNNTGG	1 cut(s)	166
XapI	RAATTY	1 cut(s)	435
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.