Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004906

Physical Location & Seq

Genomic Coordinates Reverse (-)

1106772 .. 1111457

Gene Structure 4686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00277900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGAGTGGACGATTTTCTCGCACAATCTATGTCGGCAACCTACCCTCAGATATAAGAGAACGGGAGGTTGAAGATTTATTCTACAAGTATGGCCGCATTTTGGATATTGAATTGAAGGTTCCACCTCGCCCTCCATGCTATAGTTTTGTTGAGTTTGAGAGTTCTCGGGATGCAGAAGATGCAATTAGGGGTCGTGATGGGTACAACTTTGATGGCTGTCGTTTAAGGGTTGAGCTTGCCCATGGTGGTAGTAGGGGCCCGCCACCTAGTGATCGTCGTGGTGGATATGGTGGAGGCAGTAGCAGAGGAGGCAGCAGTGGGGGTCGATTTGGTGTCTCACGTCATTCTGAATTTCGAGTTATTGTTCGTGGCCTCCCTTCTTCTGCTTCATGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTGTGTTTTGCCGAGGTTTGTCGTGACAGTGAAGGGACTTATGGCTTGGTTGATTATAACAATTATGATGACATGAAATATGCTGTTCGGGAACTTCATGATACTGAATTTAAAAATCCTTGGGCAAGATCTTATATTCGGGTTAAAGTGTATGAAAGCAGCAGTCCCTCTAGGAGTCGGAGCAGAAGCCGTAGCAGAAGCCGTAGTGTAAGAAGGAATAAGAGCAATTCTTTGGAGCCATCTGTTTCTAGATCAGTTTCAAGATCTAGGTCTGCATCTCCGGTCAAACCTTCCAGGCCAAGATCAAGATCAATGTCAAGATCAAGGTCAGGGTCTCCCCGCCCGGCGCGGTCAGATAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

264

Amino Acids

29.71

Weight (kDa)

10.25

Isoelectric Point (pI)

85.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 76	1.5e-17	RNA recognition motif
RRM_1	PF00076	120 - 182	1.2e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430
fragaria_vesca	FvH4_7g32850 FvH4_7g32850
malus_domestica	MD01G1227800.v1.1 MD01G1227900.v1.1 MD07G1298400.v1.1
prunus_persica	Prupe.2G318200_v2.0.a1
pyrus_communis	pycom01g23610 pycom07g27080
rosa_chinensis	RchiOBHm_Chr1g0382791
rosa_laevigata	RLG00000026159
rosa_multiflora	Rmu_sc0002242.1_g000001 Rmu_sc0003389.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277900
rosa_rugosa	Rorug01G0435900.1 Rorug01G0436000 Rorug01G0436100 Rorug01G0436200 Rorug01G0436300
rosa_samantha	Rh1AG461200 Rh1BG417900 Rh1CG431700 Rh1DG450100
rosa_wichuraiana	Rw1G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	486
AccII	CGCG	1 cut(s)	778
AciI	CCGC	4 cut(s)	94, 260, 769, 778
AclWI	GGATC	1 cut(s)	414
AcoI	YGGCCR	1 cut(s)	91
AcsI	RAATTY	2 cut(s)	350, 536
AdeI	CACNNNGTG	1 cut(s)	269
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	5 cut(s)	71, 110, 115, 403, 690
AjiI	CACGTC	1 cut(s)	341
AjnI	CCWGG	1 cut(s)	722
AluBI	AGCT	2 cut(s)	235, 422
AluI	AGCT	2 cut(s)	235, 422
Alw26I	GTCTC	2 cut(s)	340, 768
AlwI	GGATC	1 cut(s)	414
Ama87I	CYCGRG	1 cut(s)	165
AoxI	GGCC	4 cut(s)	91, 256, 370, 725
ApaI	GGGCCC	1 cut(s)	260
ApeKI	GCWGC	2 cut(s)	312, 588
ApoI	RAATTY	2 cut(s)	350, 536
AspLEI	GCGC	1 cut(s)	778
AspS9I	GGNCC	2 cut(s)	256, 257
AsuC2I	CCSGG	1 cut(s)	773
AsuHPI	GGTGA	1 cut(s)	437
AvaI	CYCGRG	1 cut(s)	165
BaeGI	GKGCMC	1 cut(s)	260
BanII	GRGCYC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	324, 600
BccI	CCATC	3 cut(s)	191, 206, 676
BceAI	ACGGC	2 cut(s)	603, 615
BciT130I	CCWGG	1 cut(s)	724
BcnI	CCSGG	1 cut(s)	773
BcoDI	GTCTC	2 cut(s)	340, 768
BfaI	CTAG	4 cut(s)	267, 600, 678, 696
BfmI	CTRYAG	1 cut(s)	139
BglII	AGATCT	2 cut(s)	557, 692
BisI	GCNGC	3 cut(s)	94, 313, 589
BlsI	GCNGC	3 cut(s)	95, 314, 590
Bme1390I	CCNGG	2 cut(s)	724, 773
BmeT110I	CYCGRG	1 cut(s)	165
BmgBI	CACGTC	1 cut(s)	341
BmgT120I	GGNCC	2 cut(s)	256, 257
BmiI	GGNNCC	4 cut(s)	120, 257, 258, 666
BmrFI	CCNGG	2 cut(s)	724, 773
BmsI	GCATC	3 cut(s)	160, 169, 713
BpuMI	CCSGG	1 cut(s)	773
BsaBI	GATNNNNATC	1 cut(s)	736
BsaI	GGTCTC	1 cut(s)	768
BsaJI	CCNNGG	3 cut(s)	241, 441, 548
BsaWI	WCCGGW	1 cut(s)	709
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse8I	GATNNNNATC	1 cut(s)	736
BseBI	CCWGG	1 cut(s)	724
BseDI	CCNNGG	3 cut(s)	241, 441, 548
BseGI	GGATG	1 cut(s)	175
BseJI	GATNNNNATC	1 cut(s)	736
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	60
BseRI	GAGGAG	1 cut(s)	321
BseSI	GKGCMC	1 cut(s)	260
BseXI	GCAGC	2 cut(s)	324, 600
Bsh1236I	CGCG	1 cut(s)	778
BshFI	GGCC	4 cut(s)	93, 258, 372, 727
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	2 cut(s)	710, 773
BslFI	GGGAC	2 cut(s)	478, 579
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	2 cut(s)	340, 768
BsmFI	GGGAC	2 cut(s)	478, 579
BsnI	GGCC	4 cut(s)	93, 258, 372, 727
Bso31I	GGTCTC	1 cut(s)	768
BsoBI	CYCGRG	1 cut(s)	165
Bsp120I	GGGCCC	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	8 cut(s)	271, 406, 557, 680, 692, 731, 737, 749
Bsp19I	CCATGG	1 cut(s)	241
BspACI	CCGC	4 cut(s)	94, 260, 769, 778
BspANI	GGCC	4 cut(s)	93, 258, 372, 727
BspCNI	CTCAG	1 cut(s)	59
BspFNI	CGCG	1 cut(s)	778
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	4 cut(s)	120, 257, 258, 666
BspPI	GGATC	1 cut(s)	414
BspTNI	GGTCTC	1 cut(s)	768
BssECI	CCNNGG	3 cut(s)	241, 441, 548
BssMI	GATC	8 cut(s)	271, 406, 557, 680, 692, 731, 737, 749
BssT1I	CCWWGG	2 cut(s)	241, 548
Bst2UI	CCWGG	1 cut(s)	724
Bst4CI	ACNGT	1 cut(s)	458
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstC8I	GCNNGC	2 cut(s)	237, 260
BstDEI	CTNAG	1 cut(s)	46
BstDSI	CCRYGG	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	778
BstHHI	GCGC	1 cut(s)	778
BstKTI	GATC	8 cut(s)	274, 409, 560, 683, 695, 734, 740, 752
BstMAI	GTCTC	2 cut(s)	340, 768
BstMBI	GATC	8 cut(s)	271, 406, 557, 680, 692, 731, 737, 749
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 179, 309
BstNI	CCWGG	1 cut(s)	724
BstSCI	CCNGG	2 cut(s)	722, 771
BstSFI	CTRYAG	1 cut(s)	139
BstSLI	GKGCMC	1 cut(s)	260
BstUI	CGCG	1 cut(s)	778
BstV1I	GCAGC	2 cut(s)	324, 600
BstX2I	RGATCY	2 cut(s)	557, 692
BstYI	RGATCY	2 cut(s)	557, 692
BsuRI	GGCC	4 cut(s)	93, 258, 372, 727
BtgI	CCRYGG	1 cut(s)	241
BtrI	CACGTC	1 cut(s)	341
BtsCI	GGATG	1 cut(s)	175
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	2 cut(s)	322, 463
Cac8I	GCNNGC	2 cut(s)	237, 260
CciI	TCATGA	1 cut(s)	526
CfoI	GCGC	1 cut(s)	778
Cfr13I	GGNCC	2 cut(s)	256, 257
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	5 cut(s)	135, 242, 390, 502, 527
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	46
DpnI	GATC	8 cut(s)	273, 408, 559, 682, 694, 733, 739, 751
DpnII	GATC	8 cut(s)	271, 406, 557, 680, 692, 731, 737, 749
DraI	TTTAAA	1 cut(s)	541
DraIII	CACNNNGTG	1 cut(s)	269
EaeI	YGGCCR	1 cut(s)	91
Eco130I	CCWWGG	2 cut(s)	241, 548
Eco24I	GRGCYC	1 cut(s)	260
Eco31I	GGTCTC	1 cut(s)	768
Eco88I	CYCGRG	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	722
EcoT14I	CCWWGG	2 cut(s)	241, 548
EcoT38I	GRGCYC	1 cut(s)	260
ErhI	CCWWGG	2 cut(s)	241, 548
FaeI	CATG	5 cut(s)	138, 245, 393, 505, 530
FaqI	GGGAC	2 cut(s)	478, 579
FatI	CATG	5 cut(s)	134, 241, 389, 501, 526
FauI	CCCGC	2 cut(s)	267, 776
FauNDI	CATATG	1 cut(s)	411
Fnu4HI	GCNGC	3 cut(s)	94, 313, 589
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	3 cut(s)	94, 313, 589
FspBI	CTAG	4 cut(s)	267, 600, 678, 696
GlaI	GCGC	1 cut(s)	777
GluI	GCNGC	3 cut(s)	94, 313, 589
HaeIII	GGCC	4 cut(s)	93, 258, 372, 727
HapII	CCGG	2 cut(s)	710, 773
HhaI	GCGC	1 cut(s)	778
Hin1II	CATG	5 cut(s)	138, 245, 393, 505, 530
Hin6I	GCGC	1 cut(s)	776
HinP1I	GCGC	1 cut(s)	776
HinfI	GANTC	1 cut(s)	604
HpaII	CCGG	2 cut(s)	710, 773
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188I	TCNGA	4 cut(s)	49, 349, 609, 784
Hpy188III	TCNNGA	9 cut(s)	167, 194, 452, 518, 527, 678, 690, 735, 747
Hpy8I	GTNNAC	1 cut(s)	8
Hpy99I	CGWCG	1 cut(s)	279
HpyAV	CCTTC	6 cut(s)	109, 387, 397, 455, 636, 729
HpyCH4III	ACNGT	1 cut(s)	458
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	3 cut(s)	173, 182, 704
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 179, 309
HpyF3I	CTNAG	1 cut(s)	46
HpySE526I	ACGT	1 cut(s)	340
Hsp92II	CATG	5 cut(s)	138, 245, 393, 505, 530
HspAI	GCGC	1 cut(s)	776
Kzo9I	GATC	8 cut(s)	271, 406, 557, 680, 692, 731, 737, 749
LmnI	GCTCC	2 cut(s)	609, 664
LpnPI	CCDG	6 cut(s)	408, 709, 723, 736, 744, 786
Lsp1109I	GCAGC	2 cut(s)	324, 600
LweI	GCATC	3 cut(s)	160, 169, 713
MaeI	CTAG	4 cut(s)	267, 600, 678, 696
MaeII	ACGT	1 cut(s)	340
MaeIII	GTNAC	1 cut(s)	452
MalI	GATC	8 cut(s)	273, 408, 559, 682, 694, 733, 739, 751
MboI	GATC	8 cut(s)	271, 406, 557, 680, 692, 731, 737, 749
MboII	GAAGA	3 cut(s)	83, 188, 372
MflI	RGATCY	2 cut(s)	557, 692
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	6 cut(s)	110, 183, 350, 490, 536, 655
MlyI	GAGTC	1 cut(s)	613
MmeI	TCCRAC	1 cut(s)	587
MseI	TTAA	3 cut(s)	224, 540, 573
MspI	CCGG	2 cut(s)	710, 773
MspR9I	CCNGG	2 cut(s)	724, 773
MvaI	CCWGG	1 cut(s)	724
MvnI	CGCG	1 cut(s)	778
MwoI	GCNNNNNNNGC	3 cut(s)	135, 179, 309
NciI	CCSGG	1 cut(s)	773
NcoI	CCATGG	1 cut(s)	241
NdeI	CATATG	1 cut(s)	411
NdeII	GATC	8 cut(s)	271, 406, 557, 680, 692, 731, 737, 749
NlaIII	CATG	5 cut(s)	138, 245, 393, 505, 530
NlaIV	GGNNCC	4 cut(s)	120, 257, 258, 666
NmeAIII	GCCGAG	1 cut(s)	466
NmuCI	GTSAC	1 cut(s)	452
PagI	TCATGA	1 cut(s)	526
PkrI	GCNGC	3 cut(s)	95, 314, 590
PleI	GAGTC	1 cut(s)	612
PpsI	GAGTC	1 cut(s)	612
PsiI	TTATAA	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	722
PspGI	CCWGG	1 cut(s)	722
PspN4I	GGNNCC	4 cut(s)	120, 257, 258, 666
PspOMI	GGGCCC	1 cut(s)	256
PspPI	GGNCC	2 cut(s)	256, 257
PsuI	RGATCY	2 cut(s)	557, 692
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SaqAI	TTAA	3 cut(s)	224, 540, 573
SatI	GCNGC	3 cut(s)	94, 313, 589
Sau3AI	GATC	8 cut(s)	271, 406, 557, 680, 692, 731, 737, 749
Sau96I	GGNCC	2 cut(s)	256, 257
SchI	GAGTC	1 cut(s)	613
ScrFI	CCNGG	2 cut(s)	724, 773
SduI	GDGCHC	1 cut(s)	260
SfaNI	GCATC	3 cut(s)	160, 169, 713
SfcI	CTRYAG	1 cut(s)	139
Sse9I	AATT	6 cut(s)	110, 183, 350, 490, 536, 655
SsiI	CCGC	4 cut(s)	94, 260, 769, 778
SspMI	CTAG	4 cut(s)	267, 600, 678, 696
StyD4I	CCNGG	2 cut(s)	722, 771
StyI	CCWWGG	2 cut(s)	241, 548
TaaI	ACNGT	1 cut(s)	458
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	2 cut(s)	325, 355
TasI	AATT	6 cut(s)	110, 183, 350, 490, 536, 655
TauI	GCSGC	1 cut(s)	96
Tru1I	TTAA	3 cut(s)	224, 540, 573
Tru9I	TTAA	3 cut(s)	224, 540, 573
TscAI	CASTG	2 cut(s)	322, 463
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	2 cut(s)	312, 588
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	4 cut(s)	378, 515, 518, 597
TspRI	CASTG	2 cut(s)	322, 463
XapI	RAATTY	2 cut(s)	350, 536
XbaI	TCTAGA	1 cut(s)	677
XspI	CTAG	4 cut(s)	267, 600, 678, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.