Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003389.1

Orthogroup ID

OG0004906

Physical Location & Seq

Genomic Coordinates Forward (+)

7566 .. 10983

Gene Structure 3418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003389.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atggtagatgatccgacttgttcaaacattccgattcctaatataaggaagcaattgcagaacccagtcaaagctaagcttttattctccatacatgcgccggcgctgcccacaaccgcactcttcacctccgaagcttctccgattcgtctccgaaaatttgcagcagccaatcttttggtctcaaatatgagtggacgattttctcgcacaatttatgtcggcaacctaccctcagatataagagaacgggaggttgaagatttattctacaagtatggccgcattttggatattgaattgaaggttccacctcgccctccatgctatagttttgttgagtttgagagttctcgggatgcagaagatgcaattaggggcattgccaagatcaatgtcaagatcaaggtcagggtctccccgcccggcgcggtcagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

146

Amino Acids

16.35

Weight (kDa)

9.69

Isoelectric Point (pI)

50.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430
fragaria_vesca	FvH4_7g32850 FvH4_7g32850
malus_domestica	MD01G1227800.v1.1 MD01G1227900.v1.1 MD07G1298400.v1.1
prunus_persica	Prupe.2G318200_v2.0.a1
pyrus_communis	pycom01g23610 pycom07g27080
rosa_chinensis	RchiOBHm_Chr1g0382791
rosa_laevigata	RLG00000026159
rosa_multiflora	Rmu_sc0002242.1_g000001 Rmu_sc0003389.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277900
rosa_rugosa	Rorug01G0435900.1 Rorug01G0436000 Rorug01G0436100 Rorug01G0436200 Rorug01G0436300
rosa_samantha	Rh1AG461200 Rh1BG417900 Rh1CG431700 Rh1DG450100
rosa_wichuraiana	Rw1G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	431
AciI	CCGC	4 cut(s)	117, 283, 422, 431
AclWI	GGATC	1 cut(s)	5
AcoI	YGGCCR	1 cut(s)	280
AcsI	RAATTY	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	289
AgsI	TTSAA	4 cut(s)	24, 260, 299, 304
AluBI	AGCT	3 cut(s)	74, 79, 137
AluI	AGCT	3 cut(s)	74, 79, 137
Alw26I	GTCTC	3 cut(s)	155, 187, 421
AlwI	GGATC	1 cut(s)	5
Ama87I	CYCGRG	1 cut(s)	354
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	3 cut(s)	106, 164, 167
ApoI	RAATTY	1 cut(s)	158
AspLEI	GCGC	3 cut(s)	100, 106, 431
AsuC2I	CCSGG	1 cut(s)	426
AsuHPI	GGTGA	1 cut(s)	118
AvaI	CYCGRG	1 cut(s)	354
BbvI	GCAGC	3 cut(s)	93, 176, 179
BcnI	CCSGG	1 cut(s)	426
BcoDI	GTCTC	3 cut(s)	155, 187, 421
BfmI	CTRYAG	1 cut(s)	328
BfoI	RGCGCY	1 cut(s)	107
BisI	GCNGC	4 cut(s)	107, 165, 168, 283
BlpI	GCTNAGC	1 cut(s)	75
BlsI	GCNGC	4 cut(s)	108, 166, 169, 284
Bme1390I	CCNGG	1 cut(s)	426
BmeT110I	CYCGRG	1 cut(s)	354
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	1 cut(s)	426
BmrI	ACTGGG	1 cut(s)	59
BmsI	GCATC	2 cut(s)	349, 358
BmuI	ACTGGG	1 cut(s)	59
Bpu1102I	GCTNAGC	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	426
BsaI	GGTCTC	2 cut(s)	187, 421
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse118I	RCCGGY	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	381
BseGI	GGATG	1 cut(s)	364
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	65
BseXI	GCAGC	3 cut(s)	93, 176, 179
Bsh1236I	CGCG	1 cut(s)	431
BshFI	GGCC	1 cut(s)	282
BsiHKCI	CYCGRG	1 cut(s)	354
BsiSI	CCGG	2 cut(s)	101, 426
BslI	CCNNNNNNNGG	1 cut(s)	289
BsmAI	GTCTC	3 cut(s)	155, 187, 421
BsmBI	CGTCTC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	282
Bso31I	GGTCTC	2 cut(s)	187, 421
BsoBI	CYCGRG	1 cut(s)	354
Bsp143I	GATC	3 cut(s)	10, 390, 402
Bsp1720I	GCTNAGC	1 cut(s)	75
BspACI	CCGC	4 cut(s)	117, 283, 422, 431
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	1 cut(s)	248
BspFNI	CGCG	1 cut(s)	431
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	1 cut(s)	5
BspTNI	GGTCTC	2 cut(s)	187, 421
BsrDI	GCAATG	1 cut(s)	381
BsrFI	RCCGGY	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	100
BssMI	GATC	3 cut(s)	10, 390, 402
Bst6I	CTCTTC	1 cut(s)	128
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	2 cut(s)	75, 235
BstF5I	GGATG	1 cut(s)	364
BstFNI	CGCG	1 cut(s)	431
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	3 cut(s)	100, 106, 431
BstKTI	GATC	3 cut(s)	13, 393, 405
BstMAI	GTCTC	3 cut(s)	155, 187, 421
BstMBI	GATC	3 cut(s)	10, 390, 402
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 324, 368
BstNSI	RCATGY	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	424
BstSFI	CTRYAG	1 cut(s)	328
BstUI	CGCG	1 cut(s)	431
BstV1I	GCAGC	3 cut(s)	93, 176, 179
BstXI	CCANNNNNNTGG	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	364
Cac8I	GCNNGC	1 cut(s)	102
CfoI	GCGC	3 cut(s)	100, 106, 431
Cfr10I	RCCGGY	1 cut(s)	100
CviAII	CATG	2 cut(s)	95, 324
CviJI	RGCY	5 cut(s)	74, 79, 137, 170, 282
CviKI_1	RGCY	5 cut(s)	74, 79, 137, 170, 282
DdeI	CTNAG	2 cut(s)	75, 235
DpnI	GATC	3 cut(s)	12, 392, 404
DpnII	GATC	3 cut(s)	10, 390, 402
EaeI	YGGCCR	1 cut(s)	280
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Eco31I	GGTCTC	2 cut(s)	187, 421
Eco88I	CYCGRG	1 cut(s)	354
Esp3I	CGTCTC	1 cut(s)	155
FaeI	CATG	2 cut(s)	98, 327
FaiI	YATR	9 cut(s)	44, 92, 96, 191, 219, 242, 279, 325, 330
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FatI	CATG	2 cut(s)	94, 323
FauI	CCCGC	1 cut(s)	429
Fnu4HI	GCNGC	4 cut(s)	107, 165, 168, 283
FokI	GGATG	1 cut(s)	371
Fsp4HI	GCNGC	4 cut(s)	107, 165, 168, 283
GlaI	GCGC	3 cut(s)	99, 105, 430
GluI	GCNGC	4 cut(s)	107, 165, 168, 283
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	282
HapII	CCGG	2 cut(s)	101, 426
HhaI	GCGC	3 cut(s)	100, 106, 431
Hin1II	CATG	2 cut(s)	98, 327
Hin6I	GCGC	3 cut(s)	98, 104, 429
HinP1I	GCGC	3 cut(s)	98, 104, 429
HindIII	AAGCTT	2 cut(s)	77, 135
HinfI	GANTC	2 cut(s)	34, 145
HpaII	CCGG	2 cut(s)	101, 426
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188I	TCNGA	7 cut(s)	15, 33, 133, 144, 155, 238, 437
Hpy188III	TCNNGA	2 cut(s)	356, 400
Hpy8I	GTNNAC	1 cut(s)	197
HpyAV	CCTTC	1 cut(s)	298
HpyCH4V	TGCA	4 cut(s)	58, 164, 362, 371
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 324, 368
HpyF3I	CTNAG	2 cut(s)	75, 235
Hsp92II	CATG	2 cut(s)	98, 327
HspAI	GCGC	3 cut(s)	98, 104, 429
KroI	GCCGGC	1 cut(s)	100
KroNI	GCCGGC	1 cut(s)	102
Kzo9I	GATC	3 cut(s)	10, 390, 402
LpnPI	CCDG	3 cut(s)	78, 114, 397
Lsp1109I	GCAGC	3 cut(s)	93, 176, 179
LweI	GCATC	2 cut(s)	349, 358
MalI	GATC	3 cut(s)	12, 392, 404
MboI	GATC	3 cut(s)	10, 390, 402
MboII	GAAGA	3 cut(s)	115, 272, 377
MfeI	CAATTG	1 cut(s)	53
MluCI	AATT	5 cut(s)	53, 158, 213, 299, 372
MmeI	TCCRAC	1 cut(s)	38
MnlI	CCTC	5 cut(s)	139, 244, 247, 324, 330
MreI	CGCCGGCG	1 cut(s)	100
MroNI	GCCGGC	1 cut(s)	100
MspI	CCGG	2 cut(s)	101, 426
MspR9I	CCNGG	1 cut(s)	426
MunI	CAATTG	1 cut(s)	53
MvnI	CGCG	1 cut(s)	431
MwoI	GCNNNNNNNGC	3 cut(s)	106, 324, 368
NaeI	GCCGGC	1 cut(s)	102
NciI	CCSGG	1 cut(s)	426
NdeII	GATC	3 cut(s)	10, 390, 402
NgoMIV	GCCGGC	1 cut(s)	100
NlaIII	CATG	2 cut(s)	98, 327
NlaIV	GGNNCC	1 cut(s)	309
NspI	RCATGY	1 cut(s)	98
PdiI	GCCGGC	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	34, 145
PkrI	GCNGC	4 cut(s)	108, 166, 169, 284
PspN4I	GGNNCC	1 cut(s)	309
SatI	GCNGC	4 cut(s)	107, 165, 168, 283
Sau3AI	GATC	3 cut(s)	10, 390, 402
ScrFI	CCNGG	1 cut(s)	426
SetI	ASST	9 cut(s)	76, 81, 131, 139, 231, 258, 309, 316, 411
SfaNI	GCATC	2 cut(s)	349, 358
SfcI	CTRYAG	1 cut(s)	328
SgrAI	CRCCGGYG	1 cut(s)	100
Sse9I	AATT	5 cut(s)	53, 158, 213, 299, 372
SsiI	CCGC	4 cut(s)	117, 283, 422, 431
StyD4I	CCNGG	1 cut(s)	424
TasI	AATT	5 cut(s)	53, 158, 213, 299, 372
TauI	GCSGC	1 cut(s)	285
TfiI	GAWTC	2 cut(s)	34, 145
TseI	GCWGC	3 cut(s)	106, 164, 167
XapI	RAATTY	1 cut(s)	158
XceI	RCATGY	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.