Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0004906

Physical Location & Seq

Genomic Coordinates Forward (+)

31771500 .. 31776382

Gene Structure 4883 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1227900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAGTGGCCGATTTTCTCGCACGATCTACGTTGGCAACCTTCCCTCAGATATAAAAGAATGGGAGGTTGAAGATCTATTCTACAAGTATGGCCGCATAGTGGATATTGAACTGAAGATTCCACCGCGTCCTCCTTGTTATTCTTTTGTTGAGTTTGAGAGTTCTCGGGATGCAGAAGATGCAATCAGGGGGCGTGATGGGTATAACTTTGATGGGTGCCGTTTAAGGGTTGAACTTGCCCATGGTGGTAGGGGCCCATCTTCAAGTGATCGTCGTGGTGGGTATGACCGAGGTAGCAGTGGCGGAGGCAGTGGTGGGGGCCGATTTGGTGTTTCACGTCATTCTGAATATCGAGTTATTGTTCGTAATCTCCCTTCTTCAGCCTCGTGGCAAGACTTGAAGGATCATATGCGTAAAGCTGGTGATGTGTGTTTTGCTGAGGTTTCTCGTGACAGTGAAGGGACTTATGGCTTAGTTGATTATACAAATTCTGATGACATGAAATATGCTATCCGGAAGCTTGATGATACTGAATTCAAAAATCCTTGGGCAAGGACTCATATTCGGGTTAAATACTACGATAGGAGTCCCTCAAGGAGTCGTAGCAGAAGCCGAAGTCGTAGCAGAAGCCGAAGTGTGAGAAGGAATCGGAGCAAGTCGTTGGACCGATCTGTATCAAAATCAGTAATCAAGATCAGTATCAAGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

237

Amino Acids

26.94

Weight (kDa)

9.9

Isoelectric Point (pI)

61.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 76	5.7e-17	RNA recognition motif
RRM_1	PF00076	119 - 181	5.8e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430
fragaria_vesca	FvH4_7g32850 FvH4_7g32850
malus_domestica	MD01G1227800.v1.1 MD01G1227900.v1.1 MD07G1298400.v1.1
prunus_persica	Prupe.2G318200_v2.0.a1
pyrus_communis	pycom01g23610 pycom07g27080
rosa_chinensis	RchiOBHm_Chr1g0382791
rosa_laevigata	RLG00000026159
rosa_multiflora	Rmu_sc0002242.1_g000001 Rmu_sc0003389.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277900
rosa_rugosa	Rorug01G0435900.1 Rorug01G0436000 Rorug01G0436100 Rorug01G0436200 Rorug01G0436300
rosa_samantha	Rh1AG461200 Rh1BG417900 Rh1CG431700 Rh1DG450100
rosa_wichuraiana	Rw1G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	216
AccII	CGCG	1 cut(s)	127
AccIII	TCCGGA	1 cut(s)	513
AciI	CCGC	3 cut(s)	94, 125, 303
AclWI	GGATC	1 cut(s)	411
AcoI	YGGCCR	2 cut(s)	7, 91
AcsI	RAATTY	2 cut(s)	487, 533
AcuI	CTGAAG	2 cut(s)	134, 363
AfiI	CCNNNNNNNGG	2 cut(s)	100, 226
AgsI	TTSAA	6 cut(s)	71, 110, 233, 264, 400, 538
AjiI	CACGTC	1 cut(s)	338
AluBI	AGCT	2 cut(s)	419, 520
AluI	AGCT	2 cut(s)	419, 520
AlwI	GGATC	1 cut(s)	411
Ama87I	CYCGRG	1 cut(s)	165
Aor13HI	TCCGGA	1 cut(s)	513
AoxI	GGCC	4 cut(s)	7, 91, 253, 319
ApaI	GGGCCC	1 cut(s)	257
ApoI	RAATTY	2 cut(s)	487, 533
AspS9I	GGNCC	4 cut(s)	253, 254, 319, 664
AsuHPI	GGTGA	1 cut(s)	434
AvaI	CYCGRG	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	664
BaeGI	GKGCMC	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	257
BarI	GAAGNNNNNNTAC	2 cut(s)	358, 390
BauI	CACGAG	2 cut(s)	385, 447
BbvCI	CCTCAGC	1 cut(s)	438
BccI	CCATC	3 cut(s)	191, 206, 265
BceAI	ACGGC	1 cut(s)	204
BfaI	CTAG	1 cut(s)	709
BglII	AGATCT	2 cut(s)	73, 705
BisI	GCNGC	1 cut(s)	94
BlsI	GCNGC	1 cut(s)	95
Bme18I	GGWCC	1 cut(s)	664
BmeT110I	CYCGRG	1 cut(s)	165
BmgBI	CACGTC	1 cut(s)	338
BmgT120I	GGNCC	4 cut(s)	253, 254, 319, 664
BmiI	GGNNCC	4 cut(s)	218, 254, 255, 320
BmsI	GCATC	2 cut(s)	160, 169
Bpu10I	CCTNAGC	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	577
BsaBI	GATNNNNATC	2 cut(s)	673, 698
BsaJI	CCNNGG	3 cut(s)	241, 289, 545
BsaWI	WCCGGW	1 cut(s)	513
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 226
Bse8I	GATNNNNATC	2 cut(s)	673, 698
BseAI	TCCGGA	1 cut(s)	513
BseDI	CCNNGG	3 cut(s)	241, 289, 545
BseGI	GGATG	1 cut(s)	175
BseJI	GATNNNNATC	2 cut(s)	673, 698
BseLI	CCNNNNNNNGG	2 cut(s)	100, 226
BseMII	CTCAG	2 cut(s)	60, 429
BseSI	GKGCMC	1 cut(s)	257
Bsh1236I	CGCG	1 cut(s)	127
BshFI	GGCC	4 cut(s)	9, 93, 255, 321
BshNI	GGYRCC	1 cut(s)	216
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	514
BslFI	GGGAC	2 cut(s)	475, 573
BslI	CCNNNNNNNGG	2 cut(s)	100, 226
BsmFI	GGGAC	2 cut(s)	475, 573
BsnI	GGCC	4 cut(s)	9, 93, 255, 321
BsoBI	CYCGRG	1 cut(s)	165
Bsp120I	GGGCCC	1 cut(s)	253
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp13I	TCCGGA	1 cut(s)	513
Bsp143I	GATC	7 cut(s)	24, 73, 268, 403, 668, 693, 705
Bsp19I	CCATGG	1 cut(s)	241
BspACI	CCGC	3 cut(s)	94, 125, 303
BspANI	GGCC	4 cut(s)	9, 93, 255, 321
BspCNI	CTCAG	2 cut(s)	59, 430
BspEI	TCCGGA	1 cut(s)	513
BspFNI	CGCG	1 cut(s)	127
BspLI	GGNNCC	4 cut(s)	218, 254, 255, 320
BspPI	GGATC	1 cut(s)	411
BspT107I	GGYRCC	1 cut(s)	216
BssECI	CCNNGG	3 cut(s)	241, 289, 545
BssMI	GATC	7 cut(s)	24, 73, 268, 403, 668, 693, 705
BssSI	CACGAG	2 cut(s)	385, 447
BssT1I	CCWWGG	2 cut(s)	241, 545
Bst2BI	CACGAG	2 cut(s)	385, 447
Bst4CI	ACNGT	1 cut(s)	455
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstDEI	CTNAG	3 cut(s)	46, 438, 472
BstDSI	CCRYGG	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	127
BstKTI	GATC	7 cut(s)	27, 76, 271, 406, 671, 696, 708
BstMBI	GATC	7 cut(s)	24, 73, 268, 403, 668, 693, 705
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstSLI	GKGCMC	1 cut(s)	257
BstUI	CGCG	1 cut(s)	127
BstX2I	RGATCY	2 cut(s)	73, 705
BstYI	RGATCY	2 cut(s)	73, 705
BsuRI	GGCC	4 cut(s)	9, 93, 255, 321
BtgI	CCRYGG	1 cut(s)	241
BtrI	CACGTC	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	175
BtsI	GCAGTG	2 cut(s)	304, 316
BtsIMutI	CAGTG	3 cut(s)	304, 316, 460
Cfr13I	GGNCC	4 cut(s)	253, 254, 319, 664
CseI	GACGC	1 cut(s)	116
CviAII	CATG	2 cut(s)	242, 499
DdeI	CTNAG	3 cut(s)	46, 438, 472
DpnI	GATC	7 cut(s)	26, 75, 270, 405, 670, 695, 707
DpnII	GATC	7 cut(s)	24, 73, 268, 403, 668, 693, 705
EaeI	YGGCCR	2 cut(s)	7, 91
EciI	GGCGGA	1 cut(s)	318
Eco130I	CCWWGG	2 cut(s)	241, 545
Eco24I	GRGCYC	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	664
Eco57I	CTGAAG	2 cut(s)	134, 363
Eco88I	CYCGRG	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	253
EcoRI	GAATTC	1 cut(s)	533
EcoT14I	CCWWGG	2 cut(s)	241, 545
EcoT38I	GRGCYC	1 cut(s)	257
ErhI	CCWWGG	2 cut(s)	241, 545
FaeI	CATG	2 cut(s)	245, 502
FaqI	GGGAC	2 cut(s)	475, 573
FatI	CATG	2 cut(s)	241, 498
FauNDI	CATATG	1 cut(s)	408
Fnu4HI	GCNGC	1 cut(s)	94
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	94
FspBI	CTAG	1 cut(s)	709
GluI	GCNGC	1 cut(s)	94
HaeIII	GGCC	4 cut(s)	9, 93, 255, 321
HapII	CCGG	1 cut(s)	514
HgaI	GACGC	1 cut(s)	116
Hin1II	CATG	2 cut(s)	245, 502
HindIII	AAGCTT	1 cut(s)	518
HinfI	GANTC	5 cut(s)	118, 556, 586, 598, 646
HpaII	CCGG	1 cut(s)	514
HphI	GGTGA	1 cut(s)	434
Hpy188I	TCNGA	4 cut(s)	49, 346, 493, 651
Hpy188III	TCNNGA	5 cut(s)	167, 449, 514, 691, 703
Hpy99I	CGWCG	1 cut(s)	276
HpyAV	CCTTC	5 cut(s)	50, 384, 394, 452, 636
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4IV	ACGT	2 cut(s)	30, 337
HpyCH4V	TGCA	2 cut(s)	173, 182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	3 cut(s)	46, 438, 472
HpySE526I	ACGT	2 cut(s)	30, 337
Hsp92II	CATG	2 cut(s)	245, 502
Kpn2I	TCCGGA	1 cut(s)	513
Kzo9I	GATC	7 cut(s)	24, 73, 268, 403, 668, 693, 705
LmnI	GCTCC	1 cut(s)	651
LpnPI	CCDG	3 cut(s)	172, 405, 527
LweI	GCATC	2 cut(s)	160, 169
MaeI	CTAG	1 cut(s)	709
MaeII	ACGT	2 cut(s)	30, 337
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	7 cut(s)	26, 75, 270, 405, 670, 695, 707
MboI	GATC	7 cut(s)	24, 73, 268, 403, 668, 693, 705
MboII	GAAGA	5 cut(s)	83, 127, 188, 252, 369
MflI	RGATCY	2 cut(s)	73, 705
MhlI	GDGCHC	1 cut(s)	257
MluCI	AATT	2 cut(s)	487, 533
MlyI	GAGTC	3 cut(s)	550, 595, 607
MmeI	TCCRAC	1 cut(s)	642
MnlI	CCTC	8 cut(s)	55, 58, 141, 284, 299, 394, 433, 601
MroI	TCCGGA	1 cut(s)	513
MseI	TTAA	2 cut(s)	224, 570
MspI	CCGG	1 cut(s)	514
MvnI	CGCG	1 cut(s)	127
MwoI	GCNNNNNNNGC	1 cut(s)	179
NcoI	CCATGG	1 cut(s)	241
NdeI	CATATG	1 cut(s)	408
NdeII	GATC	7 cut(s)	24, 73, 268, 403, 668, 693, 705
NlaIII	CATG	2 cut(s)	245, 502
NlaIV	GGNNCC	4 cut(s)	218, 254, 255, 320
NmuCI	GTSAC	1 cut(s)	449
PfeI	GAWTC	2 cut(s)	118, 646
PkrI	GCNGC	1 cut(s)	95
PleI	GAGTC	3 cut(s)	550, 594, 606
PpsI	GAGTC	3 cut(s)	550, 594, 606
PspN4I	GGNNCC	4 cut(s)	218, 254, 255, 320
PspOMI	GGGCCC	1 cut(s)	253
PspPI	GGNCC	4 cut(s)	253, 254, 319, 664
PsuI	RGATCY	2 cut(s)	73, 705
SaqAI	TTAA	2 cut(s)	224, 570
SatI	GCNGC	1 cut(s)	94
Sau3AI	GATC	7 cut(s)	24, 73, 268, 403, 668, 693, 705
Sau96I	GGNCC	4 cut(s)	253, 254, 319, 664
SchI	GAGTC	3 cut(s)	550, 595, 607
SduI	GDGCHC	1 cut(s)	257
SetI	ASST	8 cut(s)	33, 42, 69, 295, 340, 421, 444, 522
SfaNI	GCATC	2 cut(s)	160, 169
SinI	GGWCC	1 cut(s)	664
SmlI	CTYRAG	1 cut(s)	592
SmoI	CTYRAG	1 cut(s)	592
Sse9I	AATT	2 cut(s)	487, 533
SsiI	CCGC	3 cut(s)	94, 125, 303
SspMI	CTAG	1 cut(s)	709
StyI	CCWWGG	2 cut(s)	241, 545
TaaI	ACNGT	1 cut(s)	455
TaiI	ACGT	2 cut(s)	33, 340
TaqI	TCGA	1 cut(s)	352
TaqII	GACCGA	2 cut(s)	303, 681
TasI	AATT	2 cut(s)	487, 533
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	2 cut(s)	118, 646
Tru1I	TTAA	2 cut(s)	224, 570
Tru9I	TTAA	2 cut(s)	224, 570
TscAI	CASTG	3 cut(s)	304, 316, 460
TseFI	GTSAC	1 cut(s)	449
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	1 cut(s)	515
TspRI	CASTG	3 cut(s)	304, 316, 460
VpaK11BI	GGWCC	1 cut(s)	664
XapI	RAATTY	2 cut(s)	487, 533
XspI	CTAG	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.