Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0004906

Physical Location & Seq

Genomic Coordinates Forward (+)

31748604 .. 31753423

Gene Structure 4820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1227800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAGCAATGGAGCTTGTGGAGCACGGCTCACCTCGAGGATTGCTCTCTTGGTTTGTAGCCGGAGTCTTCTTCTGTTGTCAAATATGAGTGGCCGATTTTCTCGCACGATCTACGTTGGCAACCTTCCCTCAGATATAAAAGAATGGGAGGTTGAAGATCTATTCTACAAGTATGGCCGCATAGTGGATATTGAACTGAAGATTCCACCGCGTCCTCCTTGTTATTTCTTTGTTGAGTTTGAGAGTTCTCGGGATGCAGAAGATGCAATCAGGGGGCGTGATGGGTATAACTTTGATGGGTGCCGTTTAAGGGTTGAACTTGCCCATGGTGGTAGGGGCCCATCTTCAAGTGATCGTCGTGGTGGGTATGACCGAGGTAGCAGTGGCGGAGGCAGTGGTGGGGGCCGATTTGGTGTTTCACGTCATTCTGAATATCGAGTTATTGTTCGTAATCTCCCTTCTTCAGCCTCGTGGCAAGACTTGAAGGATCATATGCGTAAAGCTGGTGATGTGTGTTTTGCTGAGGTTTCTCGTGACAGTGAAGGGACTTATGGCTTAGTTGATTATACAAATTCTGATGACATGAAATATGCTATCCGGAAGCTTGATGATACTGAATTCAAAAATCCTTGGGCAAGGACTCATATTCGGGTTAAATACTACGATAGGAGTCCCTCAAGGAGTCGTAGCAGAAGCCGAAGTCGTAGCAGAAGCCGAAGTGTGAGAAGGAATCGGAGCAAGTCGTTGGACCGATCTGTATCAAAATCAGTATCAAGATCAGTATCAAGATCTAGGTCTCCATCGCCGGTTAAATCTTCCAGGCCACGATCAATATCAAGGTCAAGGTCAAGGTCCAGGTCAGAATCACCCCGAGCGGCTCGGTCTGGTAGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

299

Amino Acids

33.54

Weight (kDa)

10.61

Isoelectric Point (pI)

82.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	37 - 104	4.5e-16	RNA recognition motif
RRM_1	PF00076	147 - 209	8.8e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430
fragaria_vesca	FvH4_7g32850 FvH4_7g32850
malus_domestica	MD01G1227800.v1.1 MD01G1227900.v1.1 MD07G1298400.v1.1
prunus_persica	Prupe.2G318200_v2.0.a1
pyrus_communis	pycom01g23610 pycom07g27080
rosa_chinensis	RchiOBHm_Chr1g0382791
rosa_laevigata	RLG00000026159
rosa_multiflora	Rmu_sc0002242.1_g000001 Rmu_sc0003389.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277900
rosa_rugosa	Rorug01G0435900.1 Rorug01G0436000 Rorug01G0436100 Rorug01G0436200 Rorug01G0436300
rosa_samantha	Rh1AG461200 Rh1BG417900 Rh1CG431700 Rh1DG450100
rosa_wichuraiana	Rw1G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	34
AccB1I	GGYRCC	1 cut(s)	300
AccBSI	CCGCTC	1 cut(s)	875
AccII	CGCG	1 cut(s)	211
AccIII	TCCGGA	1 cut(s)	597
AciI	CCGC	4 cut(s)	178, 209, 387, 875
AclWI	GGATC	1 cut(s)	495
AcoI	YGGCCR	2 cut(s)	91, 175
AcsI	RAATTY	2 cut(s)	571, 617
AcuI	CTGAAG	2 cut(s)	218, 447
AfiI	CCNNNNNNNGG	2 cut(s)	184, 310
AgsI	TTSAA	6 cut(s)	155, 194, 317, 348, 484, 622
AjiI	CACGTC	1 cut(s)	422
AjnI	CCWGG	2 cut(s)	818, 854
AluBI	AGCT	3 cut(s)	14, 503, 604
AluI	AGCT	3 cut(s)	14, 503, 604
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	1 cut(s)	801
AlwI	GGATC	1 cut(s)	495
Ama87I	CYCGRG	3 cut(s)	34, 249, 870
Aor13HI	TCCGGA	1 cut(s)	597
AoxI	GGCC	5 cut(s)	91, 175, 337, 403, 821
ApaI	GGGCCC	1 cut(s)	341
ApoI	RAATTY	2 cut(s)	571, 617
AspS9I	GGNCC	5 cut(s)	337, 338, 403, 748, 852
AsuHPI	GGTGA	3 cut(s)	22, 518, 858
AvaI	CYCGRG	3 cut(s)	34, 249, 870
AvaII	GGWCC	2 cut(s)	748, 852
BaeGI	GKGCMC	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	341
BarI	GAAGNNNNNNTAC	2 cut(s)	442, 474
BauI	CACGAG	2 cut(s)	469, 531
BbsI	GAAGAC	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	25
BbvCI	CCTCAGC	1 cut(s)	522
BccI	CCATC	4 cut(s)	275, 290, 349, 808
BceAI	ACGGC	2 cut(s)	41, 288
BciT130I	CCWGG	2 cut(s)	820, 856
BcoDI	GTCTC	1 cut(s)	801
BfaI	CTAG	1 cut(s)	792
BglII	AGATCT	2 cut(s)	157, 788
BisI	GCNGC	2 cut(s)	178, 876
BlsI	GCNGC	2 cut(s)	179, 877
Bme1390I	CCNGG	2 cut(s)	820, 856
Bme18I	GGWCC	2 cut(s)	748, 852
BmeT110I	CYCGRG	3 cut(s)	34, 249, 870
BmgBI	CACGTC	1 cut(s)	422
BmgT120I	GGNCC	5 cut(s)	337, 338, 403, 748, 852
BmiI	GGNNCC	4 cut(s)	302, 338, 339, 404
BmrFI	CCNGG	2 cut(s)	820, 856
BmsI	GCATC	2 cut(s)	244, 253
BpiI	GAAGAC	1 cut(s)	59
BplI	GAGNNNNNCTC	4 cut(s)	12, 44, 28, 60
Bpu10I	CCTNAGC	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	661
BsaBI	GATNNNNATC	3 cut(s)	757, 781, 832
BsaI	GGTCTC	1 cut(s)	801
BsaJI	CCNNGG	3 cut(s)	325, 373, 629
BsaWI	WCCGGW	1 cut(s)	597
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 310
Bse118I	RCCGGY	1 cut(s)	805
Bse3DI	GCAATG	1 cut(s)	13
Bse8I	GATNNNNATC	3 cut(s)	757, 781, 832
BseAI	TCCGGA	1 cut(s)	597
BseBI	CCWGG	2 cut(s)	820, 856
BseDI	CCNNGG	3 cut(s)	325, 373, 629
BseGI	GGATG	1 cut(s)	259
BseJI	GATNNNNATC	3 cut(s)	757, 781, 832
BseLI	CCNNNNNNNGG	2 cut(s)	184, 310
BseMI	GCAATG	1 cut(s)	13
BseMII	CTCAG	2 cut(s)	144, 513
BseSI	GKGCMC	1 cut(s)	341
Bsh1236I	CGCG	1 cut(s)	211
BshFI	GGCC	5 cut(s)	93, 177, 339, 405, 823
BshNI	GGYRCC	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	25
BsiHKCI	CYCGRG	3 cut(s)	34, 249, 870
BsiSI	CCGG	3 cut(s)	61, 598, 806
BslFI	GGGAC	2 cut(s)	559, 657
BslI	CCNNNNNNNGG	2 cut(s)	184, 310
BsmAI	GTCTC	1 cut(s)	801
BsmFI	GGGAC	2 cut(s)	559, 657
BsnI	GGCC	5 cut(s)	93, 177, 339, 405, 823
Bso31I	GGTCTC	1 cut(s)	801
BsoBI	CYCGRG	3 cut(s)	34, 249, 870
Bsp120I	GGGCCC	1 cut(s)	337
Bsp1286I	GDGCHC	2 cut(s)	25, 341
Bsp13I	TCCGGA	1 cut(s)	597
Bsp143I	GATC	8 cut(s)	108, 157, 352, 487, 752, 776, 788, 827
Bsp19I	CCATGG	1 cut(s)	325
BspACI	CCGC	4 cut(s)	178, 209, 387, 875
BspANI	GGCC	5 cut(s)	93, 177, 339, 405, 823
BspCNI	CTCAG	2 cut(s)	143, 514
BspEI	TCCGGA	1 cut(s)	597
BspFNI	CGCG	1 cut(s)	211
BspLI	GGNNCC	4 cut(s)	302, 338, 339, 404
BspPI	GGATC	1 cut(s)	495
BspT107I	GGYRCC	1 cut(s)	300
BspTNI	GGTCTC	1 cut(s)	801
BsrBI	CCGCTC	1 cut(s)	875
BsrDI	GCAATG	1 cut(s)	13
BsrFI	RCCGGY	1 cut(s)	805
BssAI	RCCGGY	1 cut(s)	805
BssECI	CCNNGG	3 cut(s)	325, 373, 629
BssMI	GATC	8 cut(s)	108, 157, 352, 487, 752, 776, 788, 827
BssSI	CACGAG	2 cut(s)	469, 531
BssT1I	CCWWGG	2 cut(s)	325, 629
Bst2BI	CACGAG	2 cut(s)	469, 531
Bst2UI	CCWGG	2 cut(s)	820, 856
Bst4CI	ACNGT	1 cut(s)	539
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstDEI	CTNAG	3 cut(s)	130, 522, 556
BstDSI	CCRYGG	1 cut(s)	325
BstF5I	GGATG	1 cut(s)	259
BstFNI	CGCG	1 cut(s)	211
BstKTI	GATC	8 cut(s)	111, 160, 355, 490, 755, 779, 791, 830
BstMAI	GTCTC	1 cut(s)	801
BstMBI	GATC	8 cut(s)	108, 157, 352, 487, 752, 776, 788, 827
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 263
BstNI	CCWGG	2 cut(s)	820, 856
BstSCI	CCNGG	2 cut(s)	818, 854
BstSLI	GKGCMC	1 cut(s)	341
BstUI	CGCG	1 cut(s)	211
BstV2I	GAAGAC	1 cut(s)	59
BstX2I	RGATCY	2 cut(s)	157, 788
BstYI	RGATCY	2 cut(s)	157, 788
BsuRI	GGCC	5 cut(s)	93, 177, 339, 405, 823
BtgI	CCRYGG	1 cut(s)	325
BtgZI	GCGATG	1 cut(s)	786
BtrI	CACGTC	1 cut(s)	422
BtsCI	GGATG	1 cut(s)	259
BtsI	GCAGTG	2 cut(s)	388, 400
BtsIMutI	CAGTG	3 cut(s)	388, 400, 544
Cfr10I	RCCGGY	1 cut(s)	805
Cfr13I	GGNCC	5 cut(s)	337, 338, 403, 748, 852
CseI	GACGC	1 cut(s)	200
CviAII	CATG	2 cut(s)	326, 583
DdeI	CTNAG	3 cut(s)	130, 522, 556
DpnI	GATC	8 cut(s)	110, 159, 354, 489, 754, 778, 790, 829
DpnII	GATC	8 cut(s)	108, 157, 352, 487, 752, 776, 788, 827
EaeI	YGGCCR	2 cut(s)	91, 175
EciI	GGCGGA	1 cut(s)	402
Eco130I	CCWWGG	2 cut(s)	325, 629
Eco24I	GRGCYC	1 cut(s)	341
Eco31I	GGTCTC	1 cut(s)	801
Eco47I	GGWCC	2 cut(s)	748, 852
Eco57I	CTGAAG	2 cut(s)	218, 447
Eco88I	CYCGRG	3 cut(s)	34, 249, 870
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRI	GAATTC	1 cut(s)	617
EcoRII	CCWGG	2 cut(s)	818, 854
EcoT14I	CCWWGG	2 cut(s)	325, 629
EcoT38I	GRGCYC	1 cut(s)	341
ErhI	CCWWGG	2 cut(s)	325, 629
FaeI	CATG	2 cut(s)	329, 586
FaqI	GGGAC	2 cut(s)	559, 657
FatI	CATG	2 cut(s)	325, 582
FauNDI	CATATG	1 cut(s)	492
Fnu4HI	GCNGC	2 cut(s)	178, 876
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	1 cut(s)	341
Fsp4HI	GCNGC	2 cut(s)	178, 876
FspBI	CTAG	1 cut(s)	792
GluI	GCNGC	2 cut(s)	178, 876
HaeIII	GGCC	5 cut(s)	93, 177, 339, 405, 823
HapII	CCGG	3 cut(s)	61, 598, 806
HgaI	GACGC	1 cut(s)	200
Hin1II	CATG	2 cut(s)	329, 586
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	7 cut(s)	64, 202, 640, 670, 682, 730, 863
HpaII	CCGG	3 cut(s)	61, 598, 806
HphI	GGTGA	3 cut(s)	22, 518, 858
Hpy188I	TCNGA	5 cut(s)	133, 430, 577, 735, 862
Hpy188III	TCNNGA	5 cut(s)	251, 533, 598, 774, 786
Hpy99I	CGWCG	1 cut(s)	360
HpyAV	CCTTC	5 cut(s)	134, 468, 478, 536, 720
HpyCH4III	ACNGT	1 cut(s)	539
HpyCH4IV	ACGT	2 cut(s)	114, 421
HpyCH4V	TGCA	2 cut(s)	257, 266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 263
HpyF3I	CTNAG	3 cut(s)	130, 522, 556
HpySE526I	ACGT	2 cut(s)	114, 421
Hsp92II	CATG	2 cut(s)	329, 586
Kpn2I	TCCGGA	1 cut(s)	597
Kzo9I	GATC	8 cut(s)	108, 157, 352, 487, 752, 776, 788, 827
LmnI	GCTCC	3 cut(s)	11, 20, 735
LweI	GCATC	2 cut(s)	244, 253
MaeI	CTAG	1 cut(s)	792
MaeII	ACGT	2 cut(s)	114, 421
MaeIII	GTNAC	1 cut(s)	533
MalI	GATC	8 cut(s)	110, 159, 354, 489, 754, 778, 790, 829
MbiI	CCGCTC	1 cut(s)	875
MboI	GATC	8 cut(s)	108, 157, 352, 487, 752, 776, 788, 827
MboII	GAAGA	8 cut(s)	59, 62, 167, 211, 272, 336, 453, 807
MflI	RGATCY	2 cut(s)	157, 788
MhlI	GDGCHC	2 cut(s)	25, 341
MluCI	AATT	2 cut(s)	571, 617
MlyI	GAGTC	4 cut(s)	73, 634, 679, 691
MmeI	TCCRAC	1 cut(s)	726
MroI	TCCGGA	1 cut(s)	597
MseI	TTAA	3 cut(s)	308, 654, 810
MspI	CCGG	3 cut(s)	61, 598, 806
MspR9I	CCNGG	2 cut(s)	820, 856
MvaI	CCWGG	2 cut(s)	820, 856
MvnI	CGCG	1 cut(s)	211
MwoI	GCNNNNNNNGC	2 cut(s)	20, 263
NcoI	CCATGG	1 cut(s)	325
NdeI	CATATG	1 cut(s)	492
NdeII	GATC	8 cut(s)	108, 157, 352, 487, 752, 776, 788, 827
NlaIII	CATG	2 cut(s)	329, 586
NlaIV	GGNNCC	4 cut(s)	302, 338, 339, 404
NmuCI	GTSAC	1 cut(s)	533
PaeR7I	CTCGAG	1 cut(s)	34
PfeI	GAWTC	3 cut(s)	202, 730, 863
PkrI	GCNGC	2 cut(s)	179, 877
PleI	GAGTC	4 cut(s)	72, 634, 678, 690
PpsI	GAGTC	4 cut(s)	72, 634, 678, 690
Psp6I	CCWGG	2 cut(s)	818, 854
PspGI	CCWGG	2 cut(s)	818, 854
PspN4I	GGNNCC	4 cut(s)	302, 338, 339, 404
PspOMI	GGGCCC	1 cut(s)	337
PspPI	GGNCC	5 cut(s)	337, 338, 403, 748, 852
PspXI	VCTCGAGB	1 cut(s)	34
PsuI	RGATCY	2 cut(s)	157, 788
SaqAI	TTAA	3 cut(s)	308, 654, 810
SatI	GCNGC	2 cut(s)	178, 876
Sau3AI	GATC	8 cut(s)	108, 157, 352, 487, 752, 776, 788, 827
Sau96I	GGNCC	5 cut(s)	337, 338, 403, 748, 852
SchI	GAGTC	4 cut(s)	73, 634, 679, 691
ScrFI	CCNGG	2 cut(s)	820, 856
SduI	GDGCHC	2 cut(s)	25, 341
SfaNI	GCATC	2 cut(s)	244, 253
Sfr274I	CTCGAG	1 cut(s)	34
SinI	GGWCC	2 cut(s)	748, 852
SlaI	CTCGAG	1 cut(s)	34
SmlI	CTYRAG	2 cut(s)	34, 676
SmoI	CTYRAG	2 cut(s)	34, 676
Sse9I	AATT	2 cut(s)	571, 617
SsiI	CCGC	4 cut(s)	178, 209, 387, 875
SspMI	CTAG	1 cut(s)	792
StyD4I	CCNGG	2 cut(s)	818, 854
StyI	CCWWGG	2 cut(s)	325, 629
TaaI	ACNGT	1 cut(s)	539
TaiI	ACGT	2 cut(s)	117, 424
TaqI	TCGA	2 cut(s)	35, 436
TaqII	GACCGA	3 cut(s)	387, 765, 870
TasI	AATT	2 cut(s)	571, 617
TauI	GCSGC	2 cut(s)	180, 878
TfiI	GAWTC	3 cut(s)	202, 730, 863
Tru1I	TTAA	3 cut(s)	308, 654, 810
Tru9I	TTAA	3 cut(s)	308, 654, 810
TscAI	CASTG	3 cut(s)	388, 400, 544
TseFI	GTSAC	1 cut(s)	533
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	1 cut(s)	599
TspRI	CASTG	3 cut(s)	388, 400, 544
VpaK11BI	GGWCC	2 cut(s)	748, 852
XapI	RAATTY	2 cut(s)	571, 617
XhoI	CTCGAG	1 cut(s)	34
XspI	CTAG	1 cut(s)	792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.