Domain associated at C-terminal with AAA
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G50930 |
| fragaria_vesca | FvH4_4g24040 |
| malus_domestica | MD13G1112300.v1.1 |
| prunus_persica | Prupe.1G229600_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr4g0430751 RchiOBHm_Chr7g0222361 |
| rosa_laevigata | RLG00000002067 RLG00000006952 |
| rosa_roxburghii | Rroxscaffold_3G00237040 Rroxscaffold_5G00372460 |
| rosa_rugosa | Rorug04G0245600 Rorug07G0207700 |
| rosa_samantha | Rh4AG301600 Rh4BG309500 Rh4BG309600 Rh7AG350200 Rh7BG339800 Rh7BG339900 Rh7BG340500 |
| rosa_wichuraiana | Rw4G026210 Rw7G029560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 1461 |
| AccII | CGCG | 4 cut(s) | 194, 755, 1001, 1265 |
| AciI | CCGC | 9 cut(s) | 150, 192, 194, 213, 999, 1001, 1212, 1265, 1372 |
| AclWI | GGATC | 7 cut(s) | 3, 16, 511, 524, 573, 1139, 1232 |
| AcoI | YGGCCR | 1 cut(s) | 957 |
| AcsI | RAATTY | 5 cut(s) | 335, 506, 623, 848, 1183 |
| AcyI | GRCGYC | 1 cut(s) | 501 |
| AfaI | GTAC | 2 cut(s) | 914, 1327 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 929 |
| AflIII | ACRYGT | 3 cut(s) | 732, 753, 1305 |
| AjnI | CCWGG | 2 cut(s) | 922, 1279 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1532, 1564 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 597, 629 |
| Alw21I | GWGCWC | 3 cut(s) | 134, 1023, 1371 |
| Alw26I | GTCTC | 3 cut(s) | 42, 858, 1270 |
| AlwI | GGATC | 7 cut(s) | 3, 16, 511, 524, 573, 1139, 1232 |
| Ama87I | CYCGRG | 1 cut(s) | 1122 |
| AoxI | GGCC | 4 cut(s) | 378, 957, 1266, 1527 |
| ApeKI | GCWGC | 4 cut(s) | 206, 371, 950, 1209 |
| ApoI | RAATTY | 5 cut(s) | 335, 506, 623, 848, 1183 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1582 |
| AspS9I | GGNCC | 3 cut(s) | 592, 759, 917 |
| AsuHPI | GGTGA | 4 cut(s) | 178, 451, 676, 1226 |
| AsuII | TTCGAA | 1 cut(s) | 603 |
| AsuNHI | GCTAGC | 1 cut(s) | 220 |
| AvaI | CYCGRG | 1 cut(s) | 1122 |
| AvaII | GGWCC | 3 cut(s) | 592, 759, 917 |
| BalI | TGGCCA | 1 cut(s) | 959 |
| BamHI | GGATCC | 2 cut(s) | 8, 516 |
| BanII | GRGCYC | 2 cut(s) | 134, 1023 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 887, 919 |
| Bbv12I | GWGCWC | 3 cut(s) | 134, 1023, 1371 |
| BbvI | GCAGC | 4 cut(s) | 193, 358, 962, 1196 |
| BccI | CCATC | 4 cut(s) | 299, 786, 826, 1187 |
| BceAI | ACGGC | 1 cut(s) | 186 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 199, 233 |
| BciT130I | CCWGG | 2 cut(s) | 924, 1281 |
| BcoDI | GTCTC | 3 cut(s) | 42, 858, 1270 |
| BfaI | CTAG | 9 cut(s) | 164, 221, 386, 800, 842, 989, 1088, 1107, 1616 |
| BfmI | CTRYAG | 2 cut(s) | 372, 1458 |
| BglII | AGATCT | 4 cut(s) | 396, 584, 708, 838 |
| BisI | GCNGC | 6 cut(s) | 195, 207, 372, 951, 1210, 1266 |
| BlsI | GCNGC | 6 cut(s) | 196, 208, 373, 952, 1211, 1267 |
| BmcAI | AGTACT | 1 cut(s) | 1327 |
| Bme1390I | CCNGG | 2 cut(s) | 924, 1281 |
| Bme18I | GGWCC | 3 cut(s) | 592, 759, 917 |
| BmeT110I | CYCGRG | 1 cut(s) | 1122 |
| BmgT120I | GGNCC | 3 cut(s) | 592, 759, 917 |
| BmiI | GGNNCC | 3 cut(s) | 10, 45, 518 |
| BmrFI | CCNGG | 2 cut(s) | 924, 1281 |
| BmsI | GCATC | 1 cut(s) | 271 |
| BmtI | GCTAGC | 1 cut(s) | 224 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1412 |
| BpmI | CTGGAG | 1 cut(s) | 1404 |
| Bpu14I | TTCGAA | 1 cut(s) | 603 |
| BpuEI | CTTGAG | 4 cut(s) | 689, 1376, 1493, 1667 |
| Bsa29I | ATCGAT | 1 cut(s) | 1077 |
| BsaBI | GATNNNNATC | 3 cut(s) | 326, 1061, 1229 |
| BsaHI | GRCGYC | 1 cut(s) | 501 |
| BsaI | GGTCTC | 1 cut(s) | 1270 |
| BsaJI | CCNNGG | 9 cut(s) | 168, 192, 462, 560, 954, 999, 1121, 1148, 1569 |
| BsaWI | WCCGGW | 1 cut(s) | 40 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 929 |
| Bse1I | ACTGG | 1 cut(s) | 511 |
| Bse3DI | GCAATG | 2 cut(s) | 222, 810 |
| Bse8I | GATNNNNATC | 3 cut(s) | 326, 1061, 1229 |
| BseBI | CCWGG | 2 cut(s) | 924, 1281 |
| BseCI | ATCGAT | 1 cut(s) | 1077 |
| BseDI | CCNNGG | 9 cut(s) | 168, 192, 462, 560, 954, 999, 1121, 1148, 1569 |
| BseGI | GGATG | 3 cut(s) | 308, 778, 1299 |
| BseJI | GATNNNNATC | 3 cut(s) | 326, 1061, 1229 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 929 |
| BseMI | GCAATG | 2 cut(s) | 222, 810 |
| BseMII | CTCAG | 4 cut(s) | 572, 579, 1008, 1265 |
| BseNI | ACTGG | 1 cut(s) | 511 |
| BseRI | GAGGAG | 3 cut(s) | 124, 1110, 1727 |
| BseXI | GCAGC | 4 cut(s) | 193, 358, 962, 1196 |
| Bsh1236I | CGCG | 4 cut(s) | 194, 755, 1001, 1265 |
| Bsh1285I | CGRYCG | 1 cut(s) | 213 |
| BshFI | GGCC | 4 cut(s) | 380, 959, 1268, 1529 |
| BshVI | ATCGAT | 1 cut(s) | 1077 |
| BsiEI | CGRYCG | 1 cut(s) | 213 |
| BsiHKAI | GWGCWC | 3 cut(s) | 134, 1023, 1371 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1122 |
| BsiSI | CCGG | 2 cut(s) | 41, 1024 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 929 |
| BsmAI | GTCTC | 3 cut(s) | 42, 858, 1270 |
| BsnI | GGCC | 4 cut(s) | 380, 959, 1268, 1529 |
| Bso31I | GGTCTC | 1 cut(s) | 1270 |
| BsoBI | CYCGRG | 1 cut(s) | 1122 |
| Bsp119I | TTCGAA | 1 cut(s) | 603 |
| Bsp1286I | GDGCHC | 3 cut(s) | 134, 1023, 1371 |
| Bsp19I | CCATGG | 1 cut(s) | 954 |
| BspACI | CCGC | 9 cut(s) | 150, 192, 194, 213, 999, 1001, 1212, 1265, 1372 |
| BspANI | GGCC | 4 cut(s) | 380, 959, 1268, 1529 |
| BspCNI | CTCAG | 4 cut(s) | 573, 580, 1009, 1266 |
| BspDI | ATCGAT | 1 cut(s) | 1077 |
| BspFNI | CGCG | 4 cut(s) | 194, 755, 1001, 1265 |
| BspLI | GGNNCC | 3 cut(s) | 10, 45, 518 |
| BspMAI | CTGCAG | 1 cut(s) | 376 |
| BspOI | GCTAGC | 1 cut(s) | 224 |
| BspPI | GGATC | 7 cut(s) | 3, 16, 511, 524, 573, 1139, 1232 |
| BspT104I | TTCGAA | 1 cut(s) | 603 |
| BspTNI | GGTCTC | 1 cut(s) | 1270 |
| BsrDI | GCAATG | 2 cut(s) | 222, 810 |
| BsrI | ACTGG | 1 cut(s) | 511 |
| BssECI | CCNNGG | 9 cut(s) | 168, 192, 462, 560, 954, 999, 1121, 1148, 1569 |
| BssNI | GRCGYC | 1 cut(s) | 501 |
| BssT1I | CCWWGG | 2 cut(s) | 954, 1569 |
| Bst2UI | CCWGG | 2 cut(s) | 924, 1281 |
| Bst4CI | ACNGT | 6 cut(s) | 181, 463, 917, 1152, 1179, 1631 |
| Bst6I | CTCTTC | 3 cut(s) | 148, 856, 890 |
| BstACI | GRCGYC | 1 cut(s) | 501 |
| BstBI | TTCGAA | 1 cut(s) | 603 |
| BstC8I | GCNNGC | 1 cut(s) | 222 |
| BstDEI | CTNAG | 5 cut(s) | 174, 581, 588, 1017, 1274 |
| BstDSI | CCRYGG | 7 cut(s) | 168, 192, 462, 560, 954, 999, 1148 |
| BstF5I | GGATG | 3 cut(s) | 308, 778, 1299 |
| BstFNI | CGCG | 4 cut(s) | 194, 755, 1001, 1265 |
| BstMAI | GTCTC | 3 cut(s) | 42, 858, 1270 |
| BstMCI | CGRYCG | 1 cut(s) | 213 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 203, 212, 221, 377, 386, 956, 1380, 1430 |
| BstNI | CCWGG | 2 cut(s) | 924, 1281 |
| BstNSI | RCATGY | 2 cut(s) | 736, 1309 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1412 |
| BstSCI | CCNGG | 2 cut(s) | 922, 1279 |
| BstSFI | CTRYAG | 2 cut(s) | 372, 1458 |
| BstUI | CGCG | 4 cut(s) | 194, 755, 1001, 1265 |
| BstV1I | GCAGC | 4 cut(s) | 193, 358, 962, 1196 |
| BstX2I | RGATCY | 8 cut(s) | 8, 396, 516, 565, 584, 708, 838, 1144 |
| BstYI | RGATCY | 8 cut(s) | 8, 396, 516, 565, 584, 708, 838, 1144 |
| Bsu15I | ATCGAT | 1 cut(s) | 1077 |
| BsuRI | GGCC | 4 cut(s) | 380, 959, 1268, 1529 |
| BsuTUI | ATCGAT | 1 cut(s) | 1077 |
| BtgI | CCRYGG | 7 cut(s) | 168, 192, 462, 560, 954, 999, 1148 |
| BtgZI | GCGATG | 1 cut(s) | 1125 |
| BtsCI | GGATG | 3 cut(s) | 308, 778, 1299 |
| BtsI | GCAGTG | 1 cut(s) | 1041 |
| BtsIMutI | CAGTG | 3 cut(s) | 518, 578, 1041 |
| Cac8I | GCNNGC | 1 cut(s) | 222 |
| Cfr13I | GGNCC | 3 cut(s) | 592, 759, 917 |
| Cfr42I | CCGCGG | 2 cut(s) | 195, 1002 |
| ClaI | ATCGAT | 1 cut(s) | 1077 |
| CseI | GACGC | 4 cut(s) | 16, 490, 761, 1271 |
| Csp6I | GTAC | 2 cut(s) | 913, 1326 |
| CviAII | CATG | 7 cut(s) | 434, 533, 661, 733, 955, 1306, 1709 |
| CviQI | GTAC | 2 cut(s) | 913, 1326 |
| DdeI | CTNAG | 5 cut(s) | 174, 581, 588, 1017, 1274 |
| EaeI | YGGCCR | 1 cut(s) | 957 |
| Eam1104I | CTCTTC | 3 cut(s) | 148, 856, 890 |
| EarI | CTCTTC | 3 cut(s) | 148, 856, 890 |
| EciI | GGCGGA | 1 cut(s) | 139 |
| Ecl136II | GAGCTC | 2 cut(s) | 132, 1021 |
| Eco130I | CCWWGG | 2 cut(s) | 954, 1569 |
| Eco147I | AGGCCT | 1 cut(s) | 380 |
| Eco24I | GRGCYC | 2 cut(s) | 134, 1023 |
| Eco31I | GGTCTC | 1 cut(s) | 1270 |
| Eco32I | GATATC | 1 cut(s) | 1075 |
| Eco47I | GGWCC | 3 cut(s) | 592, 759, 917 |
| Eco53kI | GAGCTC | 2 cut(s) | 132, 1021 |
| Eco88I | CYCGRG | 1 cut(s) | 1122 |
| EcoICRI | GAGCTC | 2 cut(s) | 132, 1021 |
| EcoRII | CCWGG | 2 cut(s) | 922, 1279 |
| EcoRV | GATATC | 1 cut(s) | 1075 |
| EcoT14I | CCWWGG | 2 cut(s) | 954, 1569 |
| EcoT38I | GRGCYC | 2 cut(s) | 134, 1023 |
| ErhI | CCWWGG | 2 cut(s) | 954, 1569 |
| FaeI | CATG | 7 cut(s) | 437, 536, 664, 736, 958, 1309, 1712 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 926, 958 |
| FatI | CATG | 7 cut(s) | 433, 532, 660, 732, 954, 1305, 1708 |
| FblI | GTMKAC | 1 cut(s) | 1461 |
| Fnu4HI | GCNGC | 6 cut(s) | 195, 207, 372, 951, 1210, 1266 |
| FokI | GGATG | 3 cut(s) | 295, 765, 1286 |
| FriOI | GRGCYC | 2 cut(s) | 134, 1023 |
| Fsp4HI | GCNGC | 6 cut(s) | 195, 207, 372, 951, 1210, 1266 |
| FspBI | CTAG | 9 cut(s) | 164, 221, 386, 800, 842, 989, 1088, 1107, 1616 |
| GluI | GCNGC | 6 cut(s) | 195, 207, 372, 951, 1210, 1266 |
| GsuI | CTGGAG | 1 cut(s) | 1404 |
| HaeIII | GGCC | 4 cut(s) | 380, 959, 1268, 1529 |
| HapII | CCGG | 2 cut(s) | 41, 1024 |
| HgaI | GACGC | 4 cut(s) | 16, 490, 761, 1271 |
| Hin1I | GRCGYC | 1 cut(s) | 501 |
| Hin1II | CATG | 7 cut(s) | 437, 536, 664, 736, 958, 1309, 1712 |
| HincII | GTYRAC | 3 cut(s) | 487, 996, 1006 |
| HindII | GTYRAC | 3 cut(s) | 487, 996, 1006 |
| HindIII | AAGCTT | 2 cut(s) | 888, 940 |
| HpaI | GTTAAC | 1 cut(s) | 1006 |
| HpaII | CCGG | 2 cut(s) | 41, 1024 |
| HphI | GGTGA | 4 cut(s) | 178, 451, 676, 1226 |
| Hpy166II | GTNNAC | 8 cut(s) | 431, 487, 759, 920, 996, 1006, 1085, 1462 |
| Hpy188I | TCNGA | 7 cut(s) | 139, 589, 596, 751, 814, 1018, 1132 |
| Hpy8I | GTNNAC | 8 cut(s) | 431, 487, 759, 920, 996, 1006, 1085, 1462 |
| Hpy99I | CGWCG | 1 cut(s) | 1265 |
| HpyAV | CCTTC | 5 cut(s) | 335, 414, 792, 799, 1388 |
| HpyCH4III | ACNGT | 6 cut(s) | 181, 463, 917, 1152, 1179, 1631 |
| HpyCH4IV | ACGT | 3 cut(s) | 633, 677, 1285 |
| HpyCH4V | TGCA | 4 cut(s) | 262, 374, 1297, 1317 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 203, 212, 221, 377, 386, 956, 1380, 1430 |
| HpyF3I | CTNAG | 5 cut(s) | 174, 581, 588, 1017, 1274 |
| HpySE526I | ACGT | 3 cut(s) | 633, 677, 1285 |
| Hsp92I | GRCGYC | 1 cut(s) | 501 |
| Hsp92II | CATG | 7 cut(s) | 437, 536, 664, 736, 958, 1309, 1712 |
| KspAI | GTTAAC | 1 cut(s) | 1006 |
| KspI | CCGCGG | 2 cut(s) | 195, 1002 |
| LmnI | GCTCC | 3 cut(s) | 137, 466, 1026 |
| Lsp1109I | GCAGC | 4 cut(s) | 193, 358, 962, 1196 |
| LweI | GCATC | 1 cut(s) | 271 |
| MaeI | CTAG | 9 cut(s) | 164, 221, 386, 800, 842, 989, 1088, 1107, 1616 |
| MaeII | ACGT | 3 cut(s) | 633, 677, 1285 |
| MaeIII | GTNAC | 8 cut(s) | 299, 457, 470, 766, 902, 1162, 1214, 1414 |
| MflI | RGATCY | 8 cut(s) | 8, 396, 516, 565, 584, 708, 838, 1144 |
| MhlI | GDGCHC | 3 cut(s) | 134, 1023, 1371 |
| MlsI | TGGCCA | 1 cut(s) | 959 |
| MluI | ACGCGT | 1 cut(s) | 753 |
| MluNI | TGGCCA | 1 cut(s) | 959 |
| MlyI | GAGTC | 3 cut(s) | 134, 548, 1448 |
| MmeI | TCCRAC | 1 cut(s) | 1530 |
| Mox20I | TGGCCA | 1 cut(s) | 959 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1582 |
| MscI | TGGCCA | 1 cut(s) | 959 |
| MseI | TTAA | 4 cut(s) | 89, 1005, 1667, 1729 |
| MslI | CAYNNNNRTG | 2 cut(s) | 680, 1304 |
| Msp20I | TGGCCA | 1 cut(s) | 959 |
| MspA1I | CMGCKG | 2 cut(s) | 194, 1001 |
| MspI | CCGG | 2 cut(s) | 41, 1024 |
| MspR9I | CCNGG | 2 cut(s) | 924, 1281 |
| MvaI | CCWGG | 2 cut(s) | 924, 1281 |
| MvnI | CGCG | 4 cut(s) | 194, 755, 1001, 1265 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 203, 212, 221, 377, 386, 956, 1380, 1430 |
| NcoI | CCATGG | 1 cut(s) | 954 |
| NheI | GCTAGC | 1 cut(s) | 220 |
| NlaIII | CATG | 7 cut(s) | 437, 536, 664, 736, 958, 1309, 1712 |
| NlaIV | GGNNCC | 3 cut(s) | 10, 45, 518 |
| NmuCI | GTSAC | 5 cut(s) | 457, 470, 1162, 1214, 1414 |
| NspI | RCATGY | 2 cut(s) | 736, 1309 |
| NspV | TTCGAA | 1 cut(s) | 603 |
| PceI | AGGCCT | 1 cut(s) | 380 |
| PciI | ACATGT | 2 cut(s) | 732, 1305 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 206 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1582 |
| PfeI | GAWTC | 8 cut(s) | 155, 282, 417, 644, 809, 1057, 1127, 1583 |
| PkrI | GCNGC | 6 cut(s) | 196, 208, 373, 952, 1211, 1267 |
| PleI | GAGTC | 3 cut(s) | 134, 547, 1448 |
| PpsI | GAGTC | 3 cut(s) | 134, 547, 1448 |
| PscI | ACATGT | 2 cut(s) | 732, 1305 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1412 |
| Psp124BI | GAGCTC | 2 cut(s) | 134, 1023 |
| Psp6I | CCWGG | 2 cut(s) | 922, 1279 |
| PspGI | CCWGG | 2 cut(s) | 922, 1279 |
| PspN4I | GGNNCC | 3 cut(s) | 10, 45, 518 |
| PspPI | GGNCC | 3 cut(s) | 592, 759, 917 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1452, 1484 |
| PstI | CTGCAG | 1 cut(s) | 376 |
| PsuI | RGATCY | 8 cut(s) | 8, 396, 516, 565, 584, 708, 838, 1144 |
| RsaI | GTAC | 2 cut(s) | 914, 1327 |
| RsaNI | GTAC | 2 cut(s) | 913, 1326 |
| RseI | CAYNNNNRTG | 2 cut(s) | 680, 1304 |
| SacI | GAGCTC | 2 cut(s) | 134, 1023 |
| SacII | CCGCGG | 2 cut(s) | 195, 1002 |
| SaqAI | TTAA | 4 cut(s) | 89, 1005, 1667, 1729 |
| SatI | GCNGC | 6 cut(s) | 195, 207, 372, 951, 1210, 1266 |
| Sau96I | GGNCC | 3 cut(s) | 592, 759, 917 |
| ScaI | AGTACT | 1 cut(s) | 1327 |
| SchI | GAGTC | 3 cut(s) | 134, 548, 1448 |
| ScrFI | CCNGG | 2 cut(s) | 924, 1281 |
| SduI | GDGCHC | 3 cut(s) | 134, 1023, 1371 |
| SfaNI | GCATC | 1 cut(s) | 271 |
| SfcI | CTRYAG | 2 cut(s) | 372, 1458 |
| Sfr303I | CCGCGG | 2 cut(s) | 195, 1002 |
| SfuI | TTCGAA | 1 cut(s) | 603 |
| SgrBI | CCGCGG | 2 cut(s) | 195, 1002 |
| SinI | GGWCC | 3 cut(s) | 592, 759, 917 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 680, 1304 |
| SmlI | CTYRAG | 4 cut(s) | 704, 1355, 1472, 1646 |
| SmoI | CTYRAG | 4 cut(s) | 704, 1355, 1472, 1646 |
| SseBI | AGGCCT | 1 cut(s) | 380 |
| SsiI | CCGC | 9 cut(s) | 150, 192, 194, 213, 999, 1001, 1212, 1265, 1372 |
| SspMI | CTAG | 9 cut(s) | 164, 221, 386, 800, 842, 989, 1088, 1107, 1616 |
| SstI | GAGCTC | 2 cut(s) | 134, 1023 |
| StuI | AGGCCT | 1 cut(s) | 380 |
| StyD4I | CCNGG | 2 cut(s) | 922, 1279 |
| StyI | CCWWGG | 2 cut(s) | 954, 1569 |
| TaaI | ACNGT | 6 cut(s) | 181, 463, 917, 1152, 1179, 1631 |
| TaiI | ACGT | 3 cut(s) | 636, 680, 1288 |
| TatI | WGTACW | 1 cut(s) | 1325 |
| TauI | GCSGC | 2 cut(s) | 197, 1268 |
| TfiI | GAWTC | 8 cut(s) | 155, 282, 417, 644, 809, 1057, 1127, 1583 |
| Tru1I | TTAA | 4 cut(s) | 89, 1005, 1667, 1729 |
| Tru9I | TTAA | 4 cut(s) | 89, 1005, 1667, 1729 |
| TscAI | CASTG | 3 cut(s) | 518, 585, 1048 |
| TseFI | GTSAC | 5 cut(s) | 457, 470, 1162, 1214, 1414 |
| TseI | GCWGC | 4 cut(s) | 206, 371, 950, 1209 |
| Tsp45I | GTSAC | 5 cut(s) | 457, 470, 1162, 1214, 1414 |
| TspDTI | ATGAA | 6 cut(s) | 372, 649, 698, 1128, 1177, 1623 |
| TspGWI | ACGGA | 2 cut(s) | 275, 1576 |
| TspRI | CASTG | 3 cut(s) | 518, 585, 1048 |
| VpaK11BI | GGWCC | 3 cut(s) | 592, 759, 917 |
| XapI | RAATTY | 5 cut(s) | 335, 506, 623, 848, 1183 |
| XbaI | TCTAGA | 1 cut(s) | 841 |
| XceI | RCATGY | 2 cut(s) | 736, 1309 |
| XmiI | GTMKAC | 1 cut(s) | 1461 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1582 |
| XspI | CTAG | 9 cut(s) | 164, 221, 386, 800, 842, 989, 1088, 1107, 1616 |
| ZrmI | AGTACT | 1 cut(s) | 1327 |