Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0009761

Physical Location & Seq

Genomic Coordinates Forward (+)

35542540 .. 35543565

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG339800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGTTTTCTATAACAAGCATGCCTTCAACAACATCAGTTCTATCAACCTACACCACATTTGCTGCTGCAGCAATGCTGATCAGGACAGTGATCAGTGAGGTCCAGACTATGGTCGGCCAGTTCATACCTCAAAAACTCCAGGACAAAATCATTGCCACACTTGCAGGCCTATTCGGTAACCTTCCTAATTCTCAAATGACTCTTATCATTGATGAAAACAATGGCCTCTCTATCAATGAAGTTTACCAGGCTTCAGAACTCTACTTAAGCACAAGGATCACTGCCTCAATTGATCAACTTAAGGTTTCCAAGTCCCCACGCCAAAACAACTTCTCTGTTACCATAAACAAAGGCGAGAAGCTAACTGACGAGTTTGAAGGAATACAGTTGAGGTGGGAATTCTGTTGTTCTGAAACGAAACAGGCGAATATGGACTATGAAAGCTATTGCTCATCAACAGAAGTAGTAGAGCATAAGTCAATTCAGCTCAGTTTCCACAAGCAATACAGAGAAAAGGTATTAGAAACTTACCTGCCATATGTAGTGCAAAGATCAAAAGCAATTAAAGAGGAAAATAAGGTGGTGAGGCTGCATGCACTTGGAAACTTTGGTGGAGAATGTTCGATCGGTCCCTGGGGTTCAGTCATCTTTGAACATCCATCAACTTTTGACACATTGGCAATGGACCCAATGCTGAAGAGAGAGTTGATTGCTGACTTGGACAGGTTCGTGAAGCGTAAGGAATTTTATGGCAGAGTAGGCAAGGCATGGAAACGAGGGTACTTGTTGTATGGTCCTCCTGGCACTGGAAAGTCGAGCTTGATTGCAGCCATGGCTAATTACCTCAAGTTTGATATCTATGATTTGGAGCTTACATATTTACACAGCAACTCTGAGCTTAGGAGACTGTTAGTCTCCACCGCAAATCGATCAATCATAGTGATTGAGGATATTGACTGCAGCATCGAATTGAAGGACAGACAAGTTAGAGGAACCAACCCTAGTGACAGCCAGGTATATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

341

Amino Acids

38.64

Weight (kDa)

6.55

Isoelectric Point (pI)

33.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	42 - 136	5.7e-24	Domain associated at C-terminal with AAA
AAA	PF00004	261 - 325	1.7e-09	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50930
fragaria_vesca	FvH4_4g24040
malus_domestica	MD13G1112300.v1.1
prunus_persica	Prupe.1G229600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0430751 RchiOBHm_Chr7g0222361
rosa_laevigata	RLG00000002067 RLG00000006952
rosa_roxburghii	Rroxscaffold_3G00237040 Rroxscaffold_5G00372460
rosa_rugosa	Rorug04G0245600 Rorug07G0207700
rosa_samantha	Rh4AG301600 Rh4BG309500 Rh4BG309600 Rh7AG350200 Rh7BG339800 Rh7BG339900 Rh7BG340500
rosa_wichuraiana	Rw4G026210 Rw7G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	540
AccB7I	CCANNNNNTGG	1 cut(s)	109
AciI	CCGC	1 cut(s)	921
AclWI	GGATC	1 cut(s)	284
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	2 cut(s)	398, 743
AcuI	CTGAAG	2 cut(s)	237, 716
AfaI	GTAC	1 cut(s)	782
AfiI	CCNNNNNNNGG	2 cut(s)	109, 806
AflII	CTTAAG	2 cut(s)	265, 299
AgsI	TTSAA	4 cut(s)	27, 377, 653, 973
AhdI	GACNNNNNGTC	1 cut(s)	911
AjnI	CCWGG	5 cut(s)	138, 246, 632, 799, 1011
AluBI	AGCT	6 cut(s)	361, 444, 487, 819, 871, 898
AluI	AGCT	6 cut(s)	361, 444, 487, 819, 871, 898
Alw26I	GTCTC	2 cut(s)	898, 919
AlwI	GGATC	1 cut(s)	284
AoxI	GGCC	3 cut(s)	115, 166, 223
ApeKI	GCWGC	6 cut(s)	62, 65, 68, 589, 827, 960
ApoI	RAATTY	2 cut(s)	398, 743
AspS9I	GGNCC	4 cut(s)	100, 629, 685, 794
AsuHPI	GGTGA	1 cut(s)	595
AvaII	GGWCC	4 cut(s)	100, 629, 685, 794
BbvI	GCAGC	6 cut(s)	49, 52, 80, 576, 839, 972
BccI	CCATC	1 cut(s)	667
BciT130I	CCWGG	5 cut(s)	140, 248, 634, 801, 1013
BclI	TGATCA	3 cut(s)	78, 90, 292
BcoDI	GTCTC	2 cut(s)	898, 919
BfaI	CTAG	1 cut(s)	1002
BfmI	CTRYAG	2 cut(s)	66, 958
BfrI	CTTAAG	2 cut(s)	265, 299
BfuAI	ACCTGC	1 cut(s)	540
BisI	GCNGC	6 cut(s)	63, 66, 69, 590, 828, 961
BlsI	GCNGC	6 cut(s)	64, 67, 70, 591, 829, 962
Bme1390I	CCNGG	5 cut(s)	140, 248, 634, 801, 1013
Bme18I	GGWCC	4 cut(s)	100, 629, 685, 794
BmeRI	GACNNNNNGTC	1 cut(s)	911
BmgT120I	GGNCC	4 cut(s)	100, 629, 685, 794
BmiI	GGNNCC	3 cut(s)	631, 687, 994
BmrFI	CCNGG	5 cut(s)	140, 248, 634, 801, 1013
BmsI	GCATC	1 cut(s)	972
BoxI	GACNNNNGTC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	122
Bpu10I	CCTNAGC	1 cut(s)	899
BpuEI	CTTGAG	1 cut(s)	830
Bsa29I	ATCGAT	1 cut(s)	928
BsaJI	CCNNGG	3 cut(s)	632, 633, 831
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 806
Bse1I	ACTGG	2 cut(s)	118, 811
Bse3DI	GCAATG	3 cut(s)	78, 150, 687
BseBI	CCWGG	5 cut(s)	140, 248, 634, 801, 1013
BseCI	ATCGAT	1 cut(s)	928
BseDI	CCNNGG	3 cut(s)	632, 633, 831
BseGI	GGATG	1 cut(s)	655
BseLI	CCNNNNNNNGG	2 cut(s)	109, 806
BseMI	GCAATG	3 cut(s)	78, 150, 687
BseMII	CTCAG	2 cut(s)	502, 885
BseNI	ACTGG	2 cut(s)	118, 811
BseXI	GCAGC	6 cut(s)	49, 52, 80, 576, 839, 972
Bsh1285I	CGRYCG	1 cut(s)	627
BshFI	GGCC	3 cut(s)	117, 168, 225
BshVI	ATCGAT	1 cut(s)	928
BsiEI	CGRYCG	1 cut(s)	627
BslFI	GGGAC	2 cut(s)	298, 615
BslI	CCNNNNNNNGG	2 cut(s)	109, 806
BsmAI	GTCTC	2 cut(s)	898, 919
BsmFI	GGGAC	2 cut(s)	298, 615
BsnI	GGCC	3 cut(s)	117, 168, 225
Bsp143I	GATC	7 cut(s)	78, 90, 276, 292, 551, 624, 929
Bsp19I	CCATGG	1 cut(s)	831
BspACI	CCGC	1 cut(s)	921
BspANI	GGCC	3 cut(s)	117, 168, 225
BspCNI	CTCAG	2 cut(s)	501, 886
BspDI	ATCGAT	1 cut(s)	928
BspLI	GGNNCC	3 cut(s)	631, 687, 994
BspMAI	CTGCAG	2 cut(s)	70, 962
BspMI	ACCTGC	1 cut(s)	540
BspPI	GGATC	1 cut(s)	284
BspTI	CTTAAG	2 cut(s)	265, 299
BsrDI	GCAATG	3 cut(s)	78, 150, 687
BsrI	ACTGG	2 cut(s)	118, 811
BssECI	CCNNGG	3 cut(s)	632, 633, 831
BssMI	GATC	7 cut(s)	78, 90, 276, 292, 551, 624, 929
BssT1I	CCWWGG	1 cut(s)	831
Bst2UI	CCWGG	5 cut(s)	140, 248, 634, 801, 1013
Bst4CI	ACNGT	3 cut(s)	88, 387, 909
Bst6I	CTCTTC	1 cut(s)	692
BstAFI	CTTAAG	2 cut(s)	265, 299
BstC8I	GCNNGC	3 cut(s)	20, 166, 594
BstDEI	CTNAG	3 cut(s)	488, 894, 899
BstDSI	CCRYGG	1 cut(s)	831
BstEII	GGTNACC	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	655
BstKTI	GATC	7 cut(s)	81, 93, 279, 295, 554, 627, 932
BstMAI	GTCTC	2 cut(s)	898, 919
BstMBI	GATC	7 cut(s)	78, 90, 276, 292, 551, 624, 929
BstMCI	CGRYCG	1 cut(s)	627
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 161, 759, 833
BstNI	CCWGG	5 cut(s)	140, 248, 634, 801, 1013
BstNSI	RCATGY	2 cut(s)	22, 596
BstPAI	GACNNNNGTC	1 cut(s)	110
BstPI	GGTNACC	1 cut(s)	176
BstSCI	CCNGG	5 cut(s)	138, 246, 632, 799, 1011
BstSFI	CTRYAG	2 cut(s)	66, 958
BstV1I	GCAGC	6 cut(s)	49, 52, 80, 576, 839, 972
Bsu15I	ATCGAT	1 cut(s)	928
BsuRI	GGCC	3 cut(s)	117, 168, 225
BsuTUI	ATCGAT	1 cut(s)	928
BtgI	CCRYGG	1 cut(s)	831
BtsCI	GGATG	1 cut(s)	655
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	4 cut(s)	93, 100, 279, 804
BveI	ACCTGC	1 cut(s)	540
Cac8I	GCNNGC	3 cut(s)	20, 166, 594
Cfr13I	GGNCC	4 cut(s)	100, 629, 685, 794
ClaI	ATCGAT	1 cut(s)	928
Csp6I	GTAC	1 cut(s)	781
CviAII	CATG	4 cut(s)	19, 593, 768, 832
CviQI	GTAC	1 cut(s)	781
DdeI	CTNAG	3 cut(s)	488, 894, 899
DpnI	GATC	7 cut(s)	80, 92, 278, 294, 553, 626, 931
DpnII	GATC	7 cut(s)	78, 90, 276, 292, 551, 624, 929
DriI	GACNNNNNGTC	1 cut(s)	911
EaeI	YGGCCR	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	692
Eam1105I	GACNNNNNGTC	1 cut(s)	911
EarI	CTCTTC	1 cut(s)	692
Eco130I	CCWWGG	1 cut(s)	831
Eco147I	AGGCCT	1 cut(s)	168
Eco32I	GATATC	1 cut(s)	856
Eco47I	GGWCC	4 cut(s)	100, 629, 685, 794
Eco57I	CTGAAG	2 cut(s)	237, 716
Eco91I	GGTNACC	1 cut(s)	176
EcoO65I	GGTNACC	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	398
EcoRII	CCWGG	5 cut(s)	138, 246, 632, 799, 1011
EcoRV	GATATC	1 cut(s)	856
EcoT14I	CCWWGG	1 cut(s)	831
ErhI	CCWWGG	1 cut(s)	831
FaeI	CATG	4 cut(s)	22, 596, 771, 835
FalI	AAGNNNNNCTT	4 cut(s)	7, 39, 803, 835
FaqI	GGGAC	2 cut(s)	298, 615
FatI	CATG	4 cut(s)	18, 592, 767, 831
FauNDI	CATATG	1 cut(s)	538
FbaI	TGATCA	3 cut(s)	78, 90, 292
Fnu4HI	GCNGC	6 cut(s)	63, 66, 69, 590, 828, 961
FokI	GGATG	1 cut(s)	642
Fsp4HI	GCNGC	6 cut(s)	63, 66, 69, 590, 828, 961
FspBI	CTAG	1 cut(s)	1002
GluI	GCNGC	6 cut(s)	63, 66, 69, 590, 828, 961
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	3 cut(s)	117, 168, 225
Hin1II	CATG	4 cut(s)	22, 596, 771, 835
HinfI	GANTC	1 cut(s)	199
HphI	GGTGA	1 cut(s)	595
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	3 cut(s)	256, 412, 895
Hpy188III	TCNNGA	3 cut(s)	82, 103, 730
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	4 cut(s)	33, 191, 371, 967
HpyCH4III	ACNGT	3 cut(s)	88, 387, 909
HpyCH4V	TGCA	7 cut(s)	68, 164, 547, 592, 596, 827, 960
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 161, 759, 833
HpyF3I	CTNAG	3 cut(s)	488, 894, 899
Hsp92II	CATG	4 cut(s)	22, 596, 771, 835
Ksp22I	TGATCA	3 cut(s)	78, 90, 292
Kzo9I	GATC	7 cut(s)	78, 90, 276, 292, 551, 624, 929
LmnI	GCTCC	1 cut(s)	868
Lsp1109I	GCAGC	6 cut(s)	49, 52, 80, 576, 839, 972
LweI	GCATC	1 cut(s)	972
MaeI	CTAG	1 cut(s)	1002
MaeIII	GTNAC	3 cut(s)	176, 337, 1004
MalI	GATC	7 cut(s)	80, 92, 278, 294, 553, 626, 931
MboI	GATC	7 cut(s)	78, 90, 276, 292, 551, 624, 929
MboII	GAAGA	1 cut(s)	709
MfeI	CAATTG	1 cut(s)	288
MluCI	AATT	8 cut(s)	187, 288, 398, 480, 561, 743, 838, 968
MlyI	GAGTC	1 cut(s)	193
MseI	TTAA	3 cut(s)	266, 300, 564
MspCI	CTTAAG	2 cut(s)	265, 299
MspR9I	CCNGG	5 cut(s)	140, 248, 634, 801, 1013
MunI	CAATTG	1 cut(s)	288
MvaI	CCWGG	5 cut(s)	140, 248, 634, 801, 1013
MwoI	GCNNNNNNNGC	4 cut(s)	68, 161, 759, 833
NcoI	CCATGG	1 cut(s)	831
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	7 cut(s)	78, 90, 276, 292, 551, 624, 929
NlaIII	CATG	4 cut(s)	22, 596, 771, 835
NlaIV	GGNNCC	3 cut(s)	631, 687, 994
NmuCI	GTSAC	1 cut(s)	1004
NspI	RCATGY	2 cut(s)	22, 596
PaeI	GCATGC	2 cut(s)	22, 596
PasI	CCCWGGG	1 cut(s)	633
PceI	AGGCCT	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	422
PflMI	CCANNNNNTGG	1 cut(s)	109
PfoI	TCCNGGA	1 cut(s)	138
PkrI	GCNGC	6 cut(s)	64, 67, 70, 591, 829, 962
Ple19I	CGATCG	1 cut(s)	627
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PshAI	GACNNNNGTC	1 cut(s)	110
Psp6I	CCWGG	5 cut(s)	138, 246, 632, 799, 1011
PspEI	GGTNACC	1 cut(s)	176
PspGI	CCWGG	5 cut(s)	138, 246, 632, 799, 1011
PspN4I	GGNNCC	3 cut(s)	631, 687, 994
PspPI	GGNCC	4 cut(s)	100, 629, 685, 794
PstI	CTGCAG	2 cut(s)	70, 962
PvuI	CGATCG	1 cut(s)	627
RsaI	GTAC	1 cut(s)	782
RsaNI	GTAC	1 cut(s)	781
SaqAI	TTAA	3 cut(s)	266, 300, 564
SatI	GCNGC	6 cut(s)	63, 66, 69, 590, 828, 961
Sau3AI	GATC	7 cut(s)	78, 90, 276, 292, 551, 624, 929
Sau96I	GGNCC	4 cut(s)	100, 629, 685, 794
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	5 cut(s)	140, 248, 634, 801, 1013
SfaNI	GCATC	1 cut(s)	972
SfcI	CTRYAG	2 cut(s)	66, 958
SinI	GGWCC	4 cut(s)	100, 629, 685, 794
SmlI	CTYRAG	3 cut(s)	265, 299, 845
SmoI	CTYRAG	3 cut(s)	265, 299, 845
SphI	GCATGC	2 cut(s)	22, 596
Sse9I	AATT	8 cut(s)	187, 288, 398, 480, 561, 743, 838, 968
SseBI	AGGCCT	1 cut(s)	168
SsiI	CCGC	1 cut(s)	921
SspMI	CTAG	1 cut(s)	1002
StuI	AGGCCT	1 cut(s)	168
StyD4I	CCNGG	5 cut(s)	138, 246, 632, 799, 1011
StyI	CCWWGG	1 cut(s)	831
TaaI	ACNGT	3 cut(s)	88, 387, 909
TaqI	TCGA	4 cut(s)	623, 815, 928, 966
TaqII	GACCGA	1 cut(s)	617
TasI	AATT	8 cut(s)	187, 288, 398, 480, 561, 743, 838, 968
Tru1I	TTAA	3 cut(s)	266, 300, 564
Tru9I	TTAA	3 cut(s)	266, 300, 564
TscAI	CASTG	4 cut(s)	93, 100, 286, 811
TseFI	GTSAC	1 cut(s)	1004
TseI	GCWGC	6 cut(s)	62, 65, 68, 589, 827, 960
Tsp45I	GTSAC	1 cut(s)	1004
TspDTI	ATGAA	4 cut(s)	112, 228, 252, 453
TspRI	CASTG	4 cut(s)	93, 100, 286, 811
Van91I	CCANNNNNTGG	1 cut(s)	109
Vha464I	CTTAAG	2 cut(s)	265, 299
VpaK11BI	GGWCC	4 cut(s)	100, 629, 685, 794
XapI	RAATTY	2 cut(s)	398, 743
XceI	RCATGY	2 cut(s)	22, 596
XspI	CTAG	1 cut(s)	1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.