Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009761

Physical Location & Seq

Genomic Coordinates Reverse (-)

24253751 .. 24255233

Gene Structure 1483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G229600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTTTTCTCTAGCAAGCATGCCTTCAACAACATCAGTCCTATCAACCTACACCACCTTCGCTGCAGGAGCAATGCTGCTGAGGACAGTGATCAATGAGGTCCAGACCATAACCAGCCAGTTCATTCCCCAAAAACTCCAAGACAAAATCCTGGCCACAATTGGAGGCCTTTTGGGTATTCTTCCCAACTCTCAAATGACTCTTATCATTGATGAACACAGTGGCCTCCCTGTCAATGAGATTTACCAAGCCTCAGCAATCTACTTAAGCACAAGGATCACCCCTTCAATTGAACAGCTTAAGGTTTCCAAGGCTCCAAGCCAGAACAACTTCTCTGTTACCATCAACAGAGGCGAAAAGCTTATCGATGAATTCGAAGGAATCAAGCCAATTCAGCTCAGCTTCCATAAGACATACAGAGAGAAGGTGTTGAGCACTTATCTGCCATATGTTGTAGACAGGTCAAACGCCATACAAGAAGAAAGAAAAGTGGTTAAGCTTCATGCTCTGGGGAACTTTAATGAAGAAGTTTTATGGAAACGTGGGTACTTGTTGTATGGCCCTCCTGGTACAGGGAAGTCTAGCATGATTGCAGCCATGGCCAATTTCCTCAAGTTTGACATCTATGACTTGGAGCTTACGCATCTGCGTAGCAACTCCGAGCTCAGGAGGCTGTTAGTCTCCACCGCAAACCGATCAATACTGTTAGCTCTATCTGGGTTGCTGAATTTCATTGATGGGTTATGGTCAGGCTGTGGAGATGAGAGGATAATCGTGTTTACAACCAACTACAAGGACAAACTAGATCCTGCATTGTTGAGACCAGGCCGCATGGATATGCACATTCACATGTCCTGCACACCAGGGGGATTCAAGATCCTTGCTTCATACTACCTCGGAATAAAAACTCACGGTTTCTTTGACGAAATTGAAGCATCCATTAGGGAGGTGGAGGTGACTCCCGCAGAGATTGCGGAAGAACTCATGAAAAGTGAAGACACCGATACGGTGCTTGGAGGACTTGTTGCATTCCTCAAGAACAAGAAAAAGGTGGACTGTAATGCAGGAGTCAATGTTGAAGAAACAAAAGAAGTCAATGAACAAGCGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

371

Amino Acids

41.19

Weight (kDa)

6.21

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50930
fragaria_vesca	FvH4_4g24040
malus_domestica	MD13G1112300.v1.1
prunus_persica	Prupe.1G229600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0430751 RchiOBHm_Chr7g0222361
rosa_laevigata	RLG00000002067 RLG00000006952
rosa_roxburghii	Rroxscaffold_3G00237040 Rroxscaffold_5G00372460
rosa_rugosa	Rorug04G0245600 Rorug07G0207700
rosa_samantha	Rh4AG301600 Rh4BG309500 Rh4BG309600 Rh7AG350200 Rh7BG339800 Rh7BG339900 Rh7BG340500
rosa_wichuraiana	Rw4G026210 Rw7G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	456
AciI	CCGC	4 cut(s)	687, 829, 963, 974
AclWI	GGATC	3 cut(s)	284, 800, 871
AcoI	YGGCCR	2 cut(s)	153, 600
AcsI	RAATTY	2 cut(s)	371, 727
AfaI	GTAC	2 cut(s)	548, 571
AfiI	CCNNNNNNNGG	2 cut(s)	572, 666
AflII	CTTAAG	2 cut(s)	265, 299
AflIII	ACRYGT	1 cut(s)	849
AgsI	TTSAA	6 cut(s)	27, 288, 293, 874, 932, 1079
AjnI	CCWGG	4 cut(s)	150, 565, 823, 862
AluBI	AGCT	8 cut(s)	298, 361, 397, 402, 499, 637, 664, 710
AluI	AGCT	8 cut(s)	298, 361, 397, 402, 499, 637, 664, 710
Alw21I	GWGCWC	2 cut(s)	437, 666
Alw26I	GTCTC	2 cut(s)	685, 814
AlwI	GGATC	3 cut(s)	284, 800, 871
AoxI	GGCC	6 cut(s)	153, 166, 223, 559, 600, 826
ApeKI	GCWGC	3 cut(s)	62, 76, 593
ApoI	RAATTY	2 cut(s)	371, 727
Asp700I	GAANNNNTTC	1 cut(s)	329
AspS9I	GGNCC	2 cut(s)	100, 560
AsuHPI	GGTGA	2 cut(s)	271, 967
AsuII	TTCGAA	1 cut(s)	375
AvaII	GGWCC	1 cut(s)	100
BalI	TGGCCA	2 cut(s)	155, 602
BanII	GRGCYC	1 cut(s)	666
BbsI	GAAGAC	1 cut(s)	1002
Bbv12I	GWGCWC	2 cut(s)	437, 666
BbvCI	CCTCAGC	2 cut(s)	80, 253
BbvI	GCAGC	3 cut(s)	49, 63, 605
BccI	CCATC	2 cut(s)	350, 731
BciT130I	CCWGG	4 cut(s)	152, 567, 825, 864
BclI	TGATCA	1 cut(s)	90
BcoDI	GTCTC	2 cut(s)	685, 814
BfaI	CTAG	3 cut(s)	11, 582, 803
BfmI	CTRYAG	1 cut(s)	63
BfrI	CTTAAG	2 cut(s)	265, 299
BisI	GCNGC	4 cut(s)	63, 77, 594, 829
BlpI	GCTNAGC	1 cut(s)	398
BlsI	GCNGC	4 cut(s)	64, 78, 595, 830
Bme1390I	CCNGG	4 cut(s)	152, 567, 825, 864
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	2 cut(s)	100, 560
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	4 cut(s)	152, 567, 825, 864
BmsI	GCATC	2 cut(s)	652, 944
BpiI	GAAGAC	1 cut(s)	1002
Bpu10I	CCTNAGC	3 cut(s)	80, 253, 665
Bpu1102I	GCTNAGC	1 cut(s)	398
Bpu14I	TTCGAA	1 cut(s)	375
BpuEI	CTTGAG	2 cut(s)	596, 1019
Bsa29I	ATCGAT	1 cut(s)	366
BsaI	GGTCTC	1 cut(s)	814
BsaJI	CCNNGG	4 cut(s)	309, 597, 863, 895
BsaXI	ACNNNNNCTCC	4 cut(s)	1008, 1038, 1059, 1089
Bsc4I	CCNNNNNNNGG	2 cut(s)	572, 666
Bse1I	ACTGG	1 cut(s)	118
Bse3DI	GCAATG	1 cut(s)	78
BseBI	CCWGG	4 cut(s)	152, 567, 825, 864
BseCI	ATCGAT	1 cut(s)	366
BseDI	CCNNGG	4 cut(s)	309, 597, 863, 895
BseGI	GGATG	1 cut(s)	935
BseLI	CCNNNNNNNGG	2 cut(s)	572, 666
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	4 cut(s)	71, 267, 412, 679
BseNI	ACTGG	1 cut(s)	118
BseXI	GCAGC	3 cut(s)	49, 63, 605
BsgI	GTGCAG	1 cut(s)	841
BshFI	GGCC	6 cut(s)	155, 168, 225, 561, 602, 828
BshVI	ATCGAT	1 cut(s)	366
BsiHKAI	GWGCWC	2 cut(s)	437, 666
BslI	CCNNNNNNNGG	2 cut(s)	572, 666
BsmAI	GTCTC	2 cut(s)	685, 814
BsmI	GAATGC	1 cut(s)	1028
BsnI	GGCC	6 cut(s)	155, 168, 225, 561, 602, 828
Bso31I	GGTCTC	1 cut(s)	814
Bsp119I	TTCGAA	1 cut(s)	375
Bsp1286I	GDGCHC	2 cut(s)	437, 666
Bsp143I	GATC	5 cut(s)	90, 276, 695, 805, 876
Bsp1720I	GCTNAGC	1 cut(s)	398
Bsp19I	CCATGG	1 cut(s)	597
BspACI	CCGC	4 cut(s)	687, 829, 963, 974
BspANI	GGCC	6 cut(s)	155, 168, 225, 561, 602, 828
BspCNI	CTCAG	4 cut(s)	72, 266, 411, 678
BspDI	ATCGAT	1 cut(s)	366
BspHI	TCATGA	1 cut(s)	984
BspLI	GGNNCC	1 cut(s)	315
BspMAI	CTGCAG	1 cut(s)	67
BspPI	GGATC	3 cut(s)	284, 800, 871
BspT104I	TTCGAA	1 cut(s)	375
BspTI	CTTAAG	2 cut(s)	265, 299
BspTNI	GGTCTC	1 cut(s)	814
BsrDI	GCAATG	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	4 cut(s)	309, 597, 863, 895
BssMI	GATC	5 cut(s)	90, 276, 695, 805, 876
BssT1I	CCWWGG	2 cut(s)	309, 597
Bst2UI	CCWGG	4 cut(s)	152, 567, 825, 864
Bst4CI	ACNGT	6 cut(s)	88, 221, 705, 914, 1009, 1058
BstAFI	CTTAAG	2 cut(s)	265, 299
BstAPI	GCANNNNNTGC	1 cut(s)	971
BstBI	TTCGAA	1 cut(s)	375
BstC8I	GCNNGC	2 cut(s)	16, 20
BstDEI	CTNAG	4 cut(s)	80, 253, 398, 665
BstDSI	CCRYGG	1 cut(s)	597
BstENI	CCTNNNNNAGG	1 cut(s)	570
BstF5I	GGATG	1 cut(s)	935
BstKTI	GATC	5 cut(s)	93, 279, 698, 808, 879
BstMAI	GTCTC	2 cut(s)	685, 814
BstMBI	GATC	5 cut(s)	90, 276, 695, 805, 876
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 394, 599, 670, 971
BstNI	CCWGG	4 cut(s)	152, 567, 825, 864
BstNSI	RCATGY	2 cut(s)	22, 853
BstSCI	CCNGG	4 cut(s)	150, 565, 823, 862
BstSFI	CTRYAG	1 cut(s)	63
BstV1I	GCAGC	3 cut(s)	49, 63, 605
BstV2I	GAAGAC	1 cut(s)	1002
BstX2I	RGATCY	2 cut(s)	805, 876
BstYI	RGATCY	2 cut(s)	805, 876
Bsu15I	ATCGAT	1 cut(s)	366
BsuRI	GGCC	6 cut(s)	155, 168, 225, 561, 602, 828
BsuTUI	ATCGAT	1 cut(s)	366
BtgI	CCRYGG	1 cut(s)	597
BtsCI	GGATG	1 cut(s)	935
BtsIMutI	CAGTG	2 cut(s)	93, 226
Cac8I	GCNNGC	2 cut(s)	16, 20
CciI	TCATGA	1 cut(s)	984
Cfr13I	GGNCC	2 cut(s)	100, 560
ClaI	ATCGAT	1 cut(s)	366
Csp6I	GTAC	2 cut(s)	547, 570
CviAII	CATG	7 cut(s)	19, 503, 586, 598, 832, 850, 985
CviQI	GTAC	2 cut(s)	547, 570
DdeI	CTNAG	4 cut(s)	80, 253, 398, 665
DpnI	GATC	5 cut(s)	92, 278, 697, 807, 878
DpnII	GATC	5 cut(s)	90, 276, 695, 805, 876
EaeI	YGGCCR	2 cut(s)	153, 600
Ecl136II	GAGCTC	1 cut(s)	664
Eco130I	CCWWGG	2 cut(s)	309, 597
Eco147I	AGGCCT	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	666
Eco31I	GGTCTC	1 cut(s)	814
Eco47I	GGWCC	1 cut(s)	100
Eco53kI	GAGCTC	1 cut(s)	664
EcoICRI	GAGCTC	1 cut(s)	664
EcoNI	CCTNNNNNAGG	1 cut(s)	570
EcoRI	GAATTC	1 cut(s)	371
EcoRII	CCWGG	4 cut(s)	150, 565, 823, 862
EcoT14I	CCWWGG	2 cut(s)	309, 597
EcoT38I	GRGCYC	1 cut(s)	666
ErhI	CCWWGG	2 cut(s)	309, 597
FaeI	CATG	7 cut(s)	22, 506, 589, 601, 835, 853, 988
FalI	AAGNNNNNCTT	2 cut(s)	7, 39
FatI	CATG	7 cut(s)	18, 502, 585, 597, 831, 849, 984
FauI	CCCGC	1 cut(s)	970
FauNDI	CATATG	1 cut(s)	448
FbaI	TGATCA	1 cut(s)	90
FblI	GTMKAC	1 cut(s)	456
Fnu4HI	GCNGC	4 cut(s)	63, 77, 594, 829
FokI	GGATG	1 cut(s)	922
FriOI	GRGCYC	1 cut(s)	666
Fsp4HI	GCNGC	4 cut(s)	63, 77, 594, 829
FspBI	CTAG	3 cut(s)	11, 582, 803
GluI	GCNGC	4 cut(s)	63, 77, 594, 829
HaeIII	GGCC	6 cut(s)	155, 168, 225, 561, 602, 828
Hin1II	CATG	7 cut(s)	22, 506, 589, 601, 835, 853, 988
HindIII	AAGCTT	2 cut(s)	359, 497
HinfI	GANTC	5 cut(s)	199, 381, 870, 958, 1068
HphI	GGTGA	2 cut(s)	271, 967
Hpy166II	GTNNAC	3 cut(s)	457, 780, 1054
Hpy188I	TCNGA	2 cut(s)	661, 899
Hpy188III	TCNNGA	5 cut(s)	103, 667, 874, 985, 1036
Hpy8I	GTNNAC	3 cut(s)	457, 780, 1054
HpyAV	CCTTC	5 cut(s)	33, 67, 294, 371, 418
HpyCH4III	ACNGT	6 cut(s)	88, 221, 705, 914, 1009, 1058
HpyCH4IV	ACGT	1 cut(s)	541
HpyCH4V	TGCA	7 cut(s)	65, 593, 812, 841, 858, 1028, 1064
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 394, 599, 670, 971
HpyF3I	CTNAG	4 cut(s)	80, 253, 398, 665
HpySE526I	ACGT	1 cut(s)	541
Hsp92II	CATG	7 cut(s)	22, 506, 589, 601, 835, 853, 988
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	5 cut(s)	90, 276, 695, 805, 876
LmnI	GCTCC	3 cut(s)	68, 319, 634
Lsp1109I	GCAGC	3 cut(s)	49, 63, 605
LweI	GCATC	2 cut(s)	652, 944
MaeI	CTAG	3 cut(s)	11, 582, 803
MaeII	ACGT	1 cut(s)	541
MaeIII	GTNAC	2 cut(s)	337, 955
MalI	GATC	5 cut(s)	92, 278, 697, 807, 878
MboI	GATC	5 cut(s)	90, 276, 695, 805, 876
MboII	GAAGA	6 cut(s)	173, 491, 536, 989, 1007, 1091
MfeI	CAATTG	2 cut(s)	159, 288
MflI	RGATCY	2 cut(s)	805, 876
MhlI	GDGCHC	2 cut(s)	437, 666
MlsI	TGGCCA	2 cut(s)	155, 602
MluCI	AATT	7 cut(s)	159, 288, 371, 390, 604, 727, 927
MluNI	TGGCCA	2 cut(s)	155, 602
MlyI	GAGTC	3 cut(s)	193, 952, 1077
Mox20I	TGGCCA	2 cut(s)	155, 602
MroXI	GAANNNNTTC	1 cut(s)	329
MscI	TGGCCA	2 cut(s)	155, 602
MseI	TTAA	4 cut(s)	266, 300, 495, 519
MslI	CAYNNNNRTG	2 cut(s)	836, 848
Msp20I	TGGCCA	2 cut(s)	155, 602
MspCI	CTTAAG	2 cut(s)	265, 299
MspR9I	CCNGG	4 cut(s)	152, 567, 825, 864
MunI	CAATTG	2 cut(s)	159, 288
Mva1269I	GAATGC	1 cut(s)	1028
MvaI	CCWGG	4 cut(s)	152, 567, 825, 864
MwoI	GCNNNNNNNGC	5 cut(s)	68, 394, 599, 670, 971
NcoI	CCATGG	1 cut(s)	597
NdeI	CATATG	1 cut(s)	448
NdeII	GATC	5 cut(s)	90, 276, 695, 805, 876
NlaIII	CATG	7 cut(s)	22, 506, 589, 601, 835, 853, 988
NlaIV	GGNNCC	1 cut(s)	315
NmuCI	GTSAC	1 cut(s)	955
NspI	RCATGY	2 cut(s)	22, 853
NspV	TTCGAA	1 cut(s)	375
PaeI	GCATGC	1 cut(s)	22
PagI	TCATGA	1 cut(s)	984
PceI	AGGCCT	1 cut(s)	168
PciI	ACATGT	1 cut(s)	849
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PctI	GAATGC	1 cut(s)	1028
PdmI	GAANNNNTTC	1 cut(s)	329
PfeI	GAWTC	2 cut(s)	381, 870
PkrI	GCNGC	4 cut(s)	64, 78, 595, 830
PleI	GAGTC	3 cut(s)	193, 952, 1076
PpsI	GAGTC	3 cut(s)	193, 952, 1076
PscI	ACATGT	1 cut(s)	849
Psp124BI	GAGCTC	1 cut(s)	666
Psp6I	CCWGG	4 cut(s)	150, 565, 823, 862
PspGI	CCWGG	4 cut(s)	150, 565, 823, 862
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	2 cut(s)	100, 560
PstI	CTGCAG	1 cut(s)	67
PsuI	RGATCY	2 cut(s)	805, 876
RsaI	GTAC	2 cut(s)	548, 571
RsaNI	GTAC	2 cut(s)	547, 570
RseI	CAYNNNNRTG	2 cut(s)	836, 848
SacI	GAGCTC	1 cut(s)	666
SaqAI	TTAA	4 cut(s)	266, 300, 495, 519
SatI	GCNGC	4 cut(s)	63, 77, 594, 829
Sau3AI	GATC	5 cut(s)	90, 276, 695, 805, 876
Sau96I	GGNCC	2 cut(s)	100, 560
SchI	GAGTC	3 cut(s)	193, 952, 1077
ScrFI	CCNGG	4 cut(s)	152, 567, 825, 864
SduI	GDGCHC	2 cut(s)	437, 666
SfaNI	GCATC	2 cut(s)	652, 944
SfcI	CTRYAG	1 cut(s)	63
SfuI	TTCGAA	1 cut(s)	375
SinI	GGWCC	1 cut(s)	100
SmiMI	CAYNNNNRTG	2 cut(s)	836, 848
SmlI	CTYRAG	4 cut(s)	265, 299, 611, 1034
SmoI	CTYRAG	4 cut(s)	265, 299, 611, 1034
SphI	GCATGC	1 cut(s)	22
Sse9I	AATT	7 cut(s)	159, 288, 371, 390, 604, 727, 927
SseBI	AGGCCT	1 cut(s)	168
SsiI	CCGC	4 cut(s)	687, 829, 963, 974
SspMI	CTAG	3 cut(s)	11, 582, 803
SstI	GAGCTC	1 cut(s)	666
StuI	AGGCCT	1 cut(s)	168
StyD4I	CCNGG	4 cut(s)	150, 565, 823, 862
StyI	CCWWGG	2 cut(s)	309, 597
TaaI	ACNGT	6 cut(s)	88, 221, 705, 914, 1009, 1058
TaiI	ACGT	1 cut(s)	544
TaqI	TCGA	2 cut(s)	366, 375
TasI	AATT	7 cut(s)	159, 288, 371, 390, 604, 727, 927
TauI	GCSGC	1 cut(s)	831
TfiI	GAWTC	2 cut(s)	381, 870
Tru1I	TTAA	4 cut(s)	266, 300, 495, 519
Tru9I	TTAA	4 cut(s)	266, 300, 495, 519
TscAI	CASTG	2 cut(s)	93, 226
TseFI	GTSAC	1 cut(s)	955
TseI	GCWGC	3 cut(s)	62, 76, 593
Tsp45I	GTSAC	1 cut(s)	955
TspDTI	ATGAA	9 cut(s)	112, 228, 384, 491, 537, 721, 876, 1001, 1113
TspRI	CASTG	2 cut(s)	93, 226
Vha464I	CTTAAG	2 cut(s)	265, 299
VpaK11BI	GGWCC	1 cut(s)	100
XagI	CCTNNNNNAGG	1 cut(s)	570
XapI	RAATTY	2 cut(s)	371, 727
XceI	RCATGY	2 cut(s)	22, 853
XcmI	CCANNNNNNNNNTGG	1 cut(s)	946
XmiI	GTMKAC	1 cut(s)	456
XmnI	GAANNNNTTC	1 cut(s)	329
XspI	CTAG	3 cut(s)	11, 582, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.