Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0009761

Physical Location & Seq

Genomic Coordinates Reverse (-)

24559233 .. 24560725

Gene Structure 1493 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00237040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGTTTTCTATAACAAGCATGCCTTCAACAACATCAGTTCTATCAACCTACACCACATTTGCTGCTGCAGCAATGCTGATCAGGACAGTGATCAGTGAGGTCCAGACTATGGTCGGCCAGTTCATACCTCAAAAACTCCAGGGCAAGATCATTGCCACACTTGCAGGCCTATTCGGTAACCTTCCTAATTCTCAAATGACTCTTATCATTGATGAAAGCAATGGCCTCTCTATCAATGAAGTTTACCAGGCTTCAGAACTCTACTTAAGCACAAGGATCACTGCCTCAATTGATCAACTTAAGGTTTCCAAGTCCCCACGCCAAAACAACTTCTCTGTTACCATAAACAAAGGCGAGAAGCTAACTGATGAGTTCGAAGGAATACAGTTGAGGTGGGAATTCTGTTGTTCTGAAATGAAACAGGCGAATATGGACTATGAAAGCTATTGCTCATCAACAGAAGTAGTAGAGCATAAGTCAATTCAGCTCAGTTTCCACAAGCAATACAGAGAAAAGGTATTAGAAACTTACCTGCCATATGTAGTGCAAAGATCAAAAGCAATTAAAGAGGAAAATAAGGTGGTGAGGCTGCATGCACTTGGAAACTTTGGTGGAGAATGTTCGATTGGTCCCTGGGGTTCAGTCATTTTTGAACAACCATCAACTTTTGACACATTGGCAATGGACCCAATGCTGAAGAACGAGCTGATTGCTGACTTGGACAGGTTCGTGAAGCGAAAGGAATTTTATGGCAGAGTAGGCAAGGCATGGAAACGAGGGTACTTGTTGTATGGTCCTCCTGGCACTGGAAAGTCAAGCTTAATTGCAGCCATGGCTAATTACCTCAAGTTTGATATCTATGATTTGGAGCTTACATATTTACACAGCAACTCTGAGCTTAGGAGACTCATCGAATTGAAGGACAGACAAGTTAGAGGAACCAACCCCAGTGACAGCCAGTTGACACTATCCGGATTGCTCAATTTCATTGATGGTTTATGGTCAAGCTGTGGAGATGAGAGGATAATTGTGTTTACCACCAACTACAAGGACAAGCTAGATCCTGCATTGTTGAGACCAGGCCGAATGGATATGCATGTTCACATGTCCTACTGCACACCGTGTGGATTCAAAACCCTTGCTCATAACTACCTTAAAGTAAAAACTCATCATCTCTTCAATGAAATTGAAACATTCATAAAGGAGGTTGATACGACTCCAGCAGAGATTGCAGAAGAACTCATGAAAAGTGAAGACACCGATGTAGCACTGGAAGGACTCATTGCATTCCTGAAGAAGAAGAAAGAGATGACTGCAATGCTGAAGCCAATGTTGAAGAAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

448

Amino Acids

50.81

Weight (kDa)

6.78

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	42 - 136	3.5e-23	Domain associated at C-terminal with AAA
AAA	PF00004	261 - 370	5.4e-13	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	372 - 439	8.9e-25	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50930
fragaria_vesca	FvH4_4g24040
malus_domestica	MD13G1112300.v1.1
prunus_persica	Prupe.1G229600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0430751 RchiOBHm_Chr7g0222361
rosa_laevigata	RLG00000002067 RLG00000006952
rosa_roxburghii	Rroxscaffold_3G00237040 Rroxscaffold_5G00372460
rosa_rugosa	Rorug04G0245600 Rorug07G0207700
rosa_samantha	Rh4AG301600 Rh4BG309500 Rh4BG309600 Rh7AG350200 Rh7BG339800 Rh7BG339900 Rh7BG340500
rosa_wichuraiana	Rw4G026210 Rw7G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	540
AccB7I	CCANNNNNTGG	1 cut(s)	109
AccIII	TCCGGA	1 cut(s)	971
AclWI	GGATC	2 cut(s)	284, 1055
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	2 cut(s)	398, 743
AcuI	CTGAAG	4 cut(s)	237, 716, 1313, 1343
AdeI	CACNNNGTG	2 cut(s)	1122, 1124
AfaI	GTAC	1 cut(s)	782
AfiI	CCNNNNNNNGG	2 cut(s)	109, 806
AflII	CTTAAG	2 cut(s)	265, 299
AflIII	ACRYGT	1 cut(s)	1104
AgsI	TTSAA	7 cut(s)	27, 653, 919, 1132, 1180, 1190, 1336
AjnI	CCWGG	5 cut(s)	138, 246, 632, 799, 1078
AjuI	GAANNNNNNNTTGG	2 cut(s)	609, 641
AluBI	AGCT	9 cut(s)	361, 444, 487, 706, 819, 871, 898, 1008, 1057
AluI	AGCT	9 cut(s)	361, 444, 487, 706, 819, 871, 898, 1008, 1057
Alw26I	GTCTC	2 cut(s)	898, 1069
AlwI	GGATC	2 cut(s)	284, 1055
Aor13HI	TCCGGA	1 cut(s)	971
AoxI	GGCC	4 cut(s)	115, 166, 223, 1081
ApeKI	GCWGC	5 cut(s)	62, 65, 68, 589, 827
ApoI	RAATTY	2 cut(s)	398, 743
AspS9I	GGNCC	4 cut(s)	100, 629, 685, 794
AsuHPI	GGTGA	1 cut(s)	595
AsuII	TTCGAA	1 cut(s)	375
AvaII	GGWCC	4 cut(s)	100, 629, 685, 794
BbsI	GAAGAC	1 cut(s)	1260
BbvI	GCAGC	5 cut(s)	49, 52, 80, 576, 839
BccI	CCATC	2 cut(s)	667, 986
BcgI	CGANNNNNNTGC	2 cut(s)	692, 726
BciT130I	CCWGG	5 cut(s)	140, 248, 634, 801, 1080
BclI	TGATCA	3 cut(s)	78, 90, 292
BcoDI	GTCTC	2 cut(s)	898, 1069
BfaI	CTAG	1 cut(s)	1058
BfmI	CTRYAG	1 cut(s)	66
BfrI	CTTAAG	2 cut(s)	265, 299
BfuAI	ACCTGC	1 cut(s)	540
BisI	GCNGC	5 cut(s)	63, 66, 69, 590, 828
BlsI	GCNGC	5 cut(s)	64, 67, 70, 591, 829
Bme1390I	CCNGG	5 cut(s)	140, 248, 634, 801, 1080
Bme18I	GGWCC	4 cut(s)	100, 629, 685, 794
BmgT120I	GGNCC	4 cut(s)	100, 629, 685, 794
BmiI	GGNNCC	3 cut(s)	631, 687, 940
BmrFI	CCNGG	5 cut(s)	140, 248, 634, 801, 1080
BmrI	ACTGGG	1 cut(s)	942
BmuI	ACTGGG	1 cut(s)	942
BoxI	GACNNNNGTC	1 cut(s)	110
BpiI	GAAGAC	1 cut(s)	1260
BpmI	CTGGAG	2 cut(s)	122, 1203
Bpu10I	CCTNAGC	1 cut(s)	899
Bpu14I	TTCGAA	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	830
BsaI	GGTCTC	1 cut(s)	1069
BsaJI	CCNNGG	4 cut(s)	139, 632, 633, 831
BsaWI	WCCGGW	1 cut(s)	971
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 806
Bse1I	ACTGG	5 cut(s)	118, 811, 948, 958, 1275
Bse3DI	GCAATG	6 cut(s)	78, 150, 226, 687, 1281, 1323
BseAI	TCCGGA	1 cut(s)	971
BseBI	CCWGG	5 cut(s)	140, 248, 634, 801, 1080
BseDI	CCNNGG	4 cut(s)	139, 632, 633, 831
BseLI	CCNNNNNNNGG	2 cut(s)	109, 806
BseMI	GCAATG	6 cut(s)	78, 150, 226, 687, 1281, 1323
BseMII	CTCAG	2 cut(s)	502, 885
BseNI	ACTGG	5 cut(s)	118, 811, 948, 958, 1275
BseXI	GCAGC	5 cut(s)	49, 52, 80, 576, 839
BsgI	GTGCAG	1 cut(s)	1099
BshFI	GGCC	4 cut(s)	117, 168, 225, 1083
BsiSI	CCGG	1 cut(s)	972
BslFI	GGGAC	2 cut(s)	298, 615
BslI	CCNNNNNNNGG	2 cut(s)	109, 806
BsmAI	GTCTC	2 cut(s)	898, 1069
BsmFI	GGGAC	2 cut(s)	298, 615
BsmI	GAATGC	1 cut(s)	1286
BsnI	GGCC	4 cut(s)	117, 168, 225, 1083
Bso31I	GGTCTC	1 cut(s)	1069
Bsp119I	TTCGAA	1 cut(s)	375
Bsp13I	TCCGGA	1 cut(s)	971
Bsp143I	GATC	7 cut(s)	78, 90, 147, 276, 292, 551, 1060
Bsp19I	CCATGG	1 cut(s)	831
BspANI	GGCC	4 cut(s)	117, 168, 225, 1083
BspCNI	CTCAG	2 cut(s)	501, 886
BspEI	TCCGGA	1 cut(s)	971
BspHI	TCATGA	1 cut(s)	1242
BspLI	GGNNCC	3 cut(s)	631, 687, 940
BspMAI	CTGCAG	1 cut(s)	70
BspMI	ACCTGC	1 cut(s)	540
BspPI	GGATC	2 cut(s)	284, 1055
BspT104I	TTCGAA	1 cut(s)	375
BspTI	CTTAAG	2 cut(s)	265, 299
BspTNI	GGTCTC	1 cut(s)	1069
BsrDI	GCAATG	6 cut(s)	78, 150, 226, 687, 1281, 1323
BsrI	ACTGG	5 cut(s)	118, 811, 948, 958, 1275
BssECI	CCNNGG	4 cut(s)	139, 632, 633, 831
BssMI	GATC	7 cut(s)	78, 90, 147, 276, 292, 551, 1060
BssT1I	CCWWGG	1 cut(s)	831
Bst2UI	CCWGG	5 cut(s)	140, 248, 634, 801, 1080
Bst4CI	ACNGT	3 cut(s)	88, 387, 1122
Bst6I	CTCTTC	1 cut(s)	1181
BstAFI	CTTAAG	2 cut(s)	265, 299
BstAPI	GCANNNNNTGC	1 cut(s)	1229
BstBI	TTCGAA	1 cut(s)	375
BstC8I	GCNNGC	3 cut(s)	20, 166, 594
BstDEI	CTNAG	3 cut(s)	488, 894, 899
BstDSI	CCRYGG	1 cut(s)	831
BstEII	GGTNACC	1 cut(s)	176
BstKTI	GATC	7 cut(s)	81, 93, 150, 279, 295, 554, 1063
BstMAI	GTCTC	2 cut(s)	898, 1069
BstMBI	GATC	7 cut(s)	78, 90, 147, 276, 292, 551, 1060
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 161, 759, 833, 1229
BstNI	CCWGG	5 cut(s)	140, 248, 634, 801, 1080
BstNSI	RCATGY	4 cut(s)	22, 596, 1100, 1108
BstPAI	GACNNNNGTC	1 cut(s)	110
BstPI	GGTNACC	1 cut(s)	176
BstSCI	CCNGG	5 cut(s)	138, 246, 632, 799, 1078
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	5 cut(s)	49, 52, 80, 576, 839
BstV2I	GAAGAC	1 cut(s)	1260
BstX2I	RGATCY	1 cut(s)	1060
BstYI	RGATCY	1 cut(s)	1060
BsuRI	GGCC	4 cut(s)	117, 168, 225, 1083
BtgI	CCRYGG	1 cut(s)	831
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	6 cut(s)	93, 100, 279, 804, 955, 1268
BveI	ACCTGC	1 cut(s)	540
Cac8I	GCNNGC	3 cut(s)	20, 166, 594
CciI	TCATGA	1 cut(s)	1242
Cfr13I	GGNCC	4 cut(s)	100, 629, 685, 794
Csp6I	GTAC	1 cut(s)	781
CviAII	CATG	7 cut(s)	19, 593, 768, 832, 1097, 1105, 1243
CviQI	GTAC	1 cut(s)	781
DdeI	CTNAG	3 cut(s)	488, 894, 899
DpnI	GATC	7 cut(s)	80, 92, 149, 278, 294, 553, 1062
DpnII	GATC	7 cut(s)	78, 90, 147, 276, 292, 551, 1060
DraIII	CACNNNGTG	2 cut(s)	1122, 1124
EaeI	YGGCCR	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	1181
EarI	CTCTTC	1 cut(s)	1181
Eco130I	CCWWGG	1 cut(s)	831
Eco147I	AGGCCT	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	1069
Eco32I	GATATC	1 cut(s)	856
Eco47I	GGWCC	4 cut(s)	100, 629, 685, 794
Eco57I	CTGAAG	4 cut(s)	237, 716, 1313, 1343
Eco91I	GGTNACC	1 cut(s)	176
EcoO65I	GGTNACC	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	398
EcoRII	CCWGG	5 cut(s)	138, 246, 632, 799, 1078
EcoRV	GATATC	1 cut(s)	856
EcoT14I	CCWWGG	1 cut(s)	831
EcoT22I	ATGCAT	1 cut(s)	1098
ErhI	CCWWGG	1 cut(s)	831
FaeI	CATG	7 cut(s)	22, 596, 771, 835, 1100, 1108, 1246
FalI	AAGNNNNNCTT	4 cut(s)	7, 39, 803, 835
FaqI	GGGAC	2 cut(s)	298, 615
FatI	CATG	7 cut(s)	18, 592, 767, 831, 1096, 1104, 1242
FauNDI	CATATG	1 cut(s)	538
FbaI	TGATCA	3 cut(s)	78, 90, 292
Fnu4HI	GCNGC	5 cut(s)	63, 66, 69, 590, 828
Fsp4HI	GCNGC	5 cut(s)	63, 66, 69, 590, 828
FspBI	CTAG	1 cut(s)	1058
GluI	GCNGC	5 cut(s)	63, 66, 69, 590, 828
GsuI	CTGGAG	2 cut(s)	122, 1203
HaeIII	GGCC	4 cut(s)	117, 168, 225, 1083
HapII	CCGG	1 cut(s)	972
Hin1II	CATG	7 cut(s)	22, 596, 771, 835, 1100, 1108, 1246
HincII	GTYRAC	1 cut(s)	963
HindII	GTYRAC	1 cut(s)	963
HindIII	AAGCTT	1 cut(s)	817
HinfI	GANTC	5 cut(s)	199, 906, 1128, 1216, 1278
HpaII	CCGG	1 cut(s)	972
HphI	GGTGA	1 cut(s)	595
Hpy166II	GTNNAC	4 cut(s)	244, 963, 1035, 1102
Hpy188I	TCNGA	3 cut(s)	256, 412, 895
Hpy188III	TCNNGA	6 cut(s)	82, 103, 730, 972, 1243, 1291
Hpy8I	GTNNAC	4 cut(s)	244, 963, 1035, 1102
HpyAV	CCTTC	5 cut(s)	33, 191, 371, 913, 1268
HpyCH4III	ACNGT	3 cut(s)	88, 387, 1122
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 161, 759, 833, 1229
HpyF3I	CTNAG	3 cut(s)	488, 894, 899
Hsp92II	CATG	7 cut(s)	22, 596, 771, 835, 1100, 1108, 1246
Kpn2I	TCCGGA	1 cut(s)	971
Ksp22I	TGATCA	3 cut(s)	78, 90, 292
Kzo9I	GATC	7 cut(s)	78, 90, 147, 276, 292, 551, 1060
LmnI	GCTCC	1 cut(s)	868
Lsp1109I	GCAGC	5 cut(s)	49, 52, 80, 576, 839
MaeI	CTAG	1 cut(s)	1058
MaeIII	GTNAC	3 cut(s)	176, 337, 950
MalI	GATC	7 cut(s)	80, 92, 149, 278, 294, 553, 1062
MboI	GATC	7 cut(s)	78, 90, 147, 276, 292, 551, 1060
MboII	GAAGA	7 cut(s)	709, 1168, 1247, 1265, 1306, 1309, 1312
MfeI	CAATTG	1 cut(s)	288
MflI	RGATCY	1 cut(s)	1060
MlyI	GAGTC	4 cut(s)	193, 900, 1210, 1272
Mph1103I	ATGCAT	1 cut(s)	1098
MroI	TCCGGA	1 cut(s)	971
MseI	TTAA	5 cut(s)	266, 300, 564, 821, 1155
MspCI	CTTAAG	2 cut(s)	265, 299
MspI	CCGG	1 cut(s)	972
MspR9I	CCNGG	5 cut(s)	140, 248, 634, 801, 1080
MunI	CAATTG	1 cut(s)	288
Mva1269I	GAATGC	1 cut(s)	1286
MvaI	CCWGG	5 cut(s)	140, 248, 634, 801, 1080
MwoI	GCNNNNNNNGC	5 cut(s)	68, 161, 759, 833, 1229
NcoI	CCATGG	1 cut(s)	831
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	7 cut(s)	78, 90, 147, 276, 292, 551, 1060
NlaIII	CATG	7 cut(s)	22, 596, 771, 835, 1100, 1108, 1246
NlaIV	GGNNCC	3 cut(s)	631, 687, 940
NmuCI	GTSAC	1 cut(s)	950
NsiI	ATGCAT	1 cut(s)	1098
NspI	RCATGY	4 cut(s)	22, 596, 1100, 1108
NspV	TTCGAA	1 cut(s)	375
PaeI	GCATGC	2 cut(s)	22, 596
PagI	TCATGA	1 cut(s)	1242
PasI	CCCWGGG	1 cut(s)	633
PceI	AGGCCT	1 cut(s)	168
PciI	ACATGT	1 cut(s)	1104
PctI	GAATGC	1 cut(s)	1286
PfeI	GAWTC	1 cut(s)	1128
PflMI	CCANNNNNTGG	1 cut(s)	109
PkrI	GCNGC	5 cut(s)	64, 67, 70, 591, 829
PleI	GAGTC	4 cut(s)	193, 900, 1210, 1272
PpsI	GAGTC	4 cut(s)	193, 900, 1210, 1272
PscI	ACATGT	1 cut(s)	1104
PshAI	GACNNNNGTC	1 cut(s)	110
Psp6I	CCWGG	5 cut(s)	138, 246, 632, 799, 1078
PspEI	GGTNACC	1 cut(s)	176
PspGI	CCWGG	5 cut(s)	138, 246, 632, 799, 1078
PspN4I	GGNNCC	3 cut(s)	631, 687, 940
PspPI	GGNCC	4 cut(s)	100, 629, 685, 794
PstI	CTGCAG	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	1060
RsaI	GTAC	1 cut(s)	782
RsaNI	GTAC	1 cut(s)	781
SaqAI	TTAA	5 cut(s)	266, 300, 564, 821, 1155
SatI	GCNGC	5 cut(s)	63, 66, 69, 590, 828
Sau3AI	GATC	7 cut(s)	78, 90, 147, 276, 292, 551, 1060
Sau96I	GGNCC	4 cut(s)	100, 629, 685, 794
SchI	GAGTC	4 cut(s)	193, 900, 1210, 1272
ScrFI	CCNGG	5 cut(s)	140, 248, 634, 801, 1080
SfcI	CTRYAG	1 cut(s)	66
SfuI	TTCGAA	1 cut(s)	375
SinI	GGWCC	4 cut(s)	100, 629, 685, 794
SmlI	CTYRAG	3 cut(s)	265, 299, 845
SmoI	CTYRAG	3 cut(s)	265, 299, 845
SphI	GCATGC	2 cut(s)	22, 596
SseBI	AGGCCT	1 cut(s)	168
SspMI	CTAG	1 cut(s)	1058
StuI	AGGCCT	1 cut(s)	168
StyD4I	CCNGG	5 cut(s)	138, 246, 632, 799, 1078
StyI	CCWWGG	1 cut(s)	831
TaaI	ACNGT	3 cut(s)	88, 387, 1122
TaqI	TCGA	3 cut(s)	375, 623, 912
TfiI	GAWTC	1 cut(s)	1128
Tru1I	TTAA	5 cut(s)	266, 300, 564, 821, 1155
Tru9I	TTAA	5 cut(s)	266, 300, 564, 821, 1155
TscAI	CASTG	6 cut(s)	93, 100, 286, 811, 955, 1275
TseFI	GTSAC	1 cut(s)	950
TseI	GCWGC	5 cut(s)	62, 65, 68, 589, 827
Tsp45I	GTSAC	1 cut(s)	950
TspDTI	ATGAA	9 cut(s)	112, 228, 252, 431, 453, 976, 1186, 1197, 1259
TspRI	CASTG	6 cut(s)	93, 100, 286, 811, 955, 1275
Van91I	CCANNNNNTGG	1 cut(s)	109
Vha464I	CTTAAG	2 cut(s)	265, 299
VpaK11BI	GGWCC	4 cut(s)	100, 629, 685, 794
XapI	RAATTY	2 cut(s)	398, 743
XceI	RCATGY	4 cut(s)	22, 596, 1100, 1108
XspI	CTAG	1 cut(s)	1058
Zsp2I	ATGCAT	1 cut(s)	1098

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.