Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0009761

Physical Location & Seq

Genomic Coordinates Forward (+)

35568329 .. 35569164

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG340500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGACCCAATGCTGAAGAAAGAGTTGATTGCTGACTTGGACAGGTTCGTGAAGCGTAAGGAATTTTATGGCAGAGTAGGCAAGGCATGGAAACGAGGGTACTTGTTGTATGGTCCTCCTGGCACTGGAAAGTCAAGCTTGATTGCAGCCATGGCTAATTACCTCAAGTTCGATATCTATGATTTGGAGCTTACATATTTACACAGCAACTCTGAGCTTAGGAGACTGTTAGTCTCCACCGCAAATCGATCAATCATAGTGATTGAGGATATTGACTGCAGCATCGAATTGAAGGACAGACAAGTTAGAGGAACCAACCCCAGTGACAGCCAGTTGACACTATCCGGATTGCTCAATTTCATTGATGGTTTATGGTCAAGCTGTGGAGATGAGAGGATAATTGTGTTTACCACCAACTACAAGGACAAGCTAGATCCTGCATTGTTGAGGCCAGGCCGAATGGATATGCATGTTCACATGTCCTACTGCACACCGTGTGGATTCAAAACCCTTGCTCATAACTACCTAAAAGTAAAAACTCATCATCTCTTCAATGAAATTGAAACATTCATAAAGGAGGTTGATACGACTCCAGCAGAGATTGCAGAAGAACTCATGAAAAGTGAAGACACCAATGTAGCGCTGGAAGGACTCATTGCATTCCTGAAGAAGAAGAAAGAGATGAACTGCAATGCTGAAGCCAATGTTGAAGAAACAATAGAAAATAATGAACTAAAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

247

Amino Acids

28.22

Weight (kDa)

5.78

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	34 - 161	3.3e-21	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	163 - 232	5e-25	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50930
fragaria_vesca	FvH4_4g24040
malus_domestica	MD13G1112300.v1.1
prunus_persica	Prupe.1G229600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0430751 RchiOBHm_Chr7g0222361
rosa_laevigata	RLG00000002067 RLG00000006952
rosa_roxburghii	Rroxscaffold_3G00237040 Rroxscaffold_5G00372460
rosa_rugosa	Rorug04G0245600 Rorug07G0207700
rosa_samantha	Rh4AG301600 Rh4BG309500 Rh4BG309600 Rh7AG350200 Rh7BG339800 Rh7BG339900 Rh7BG340500
rosa_wichuraiana	Rw4G026210 Rw7G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	344
AciI	CCGC	1 cut(s)	240
AclWI	GGATC	1 cut(s)	428
AcsI	RAATTY	1 cut(s)	62
AcuI	CTGAAG	3 cut(s)	35, 686, 717
AdeI	CACNNNGTG	2 cut(s)	495, 497
AfaI	GTAC	1 cut(s)	101
AfeI	AGCGCT	1 cut(s)	642
AfiI	CCNNNNNNNGG	1 cut(s)	125
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	5 cut(s)	292, 505, 553, 563, 710
AhdI	GACNNNNNGTC	1 cut(s)	230
AjnI	CCWGG	2 cut(s)	118, 451
AluBI	AGCT	5 cut(s)	138, 190, 217, 381, 430
AluI	AGCT	5 cut(s)	138, 190, 217, 381, 430
Alw26I	GTCTC	2 cut(s)	217, 238
AlwI	GGATC	1 cut(s)	428
Aor13HI	TCCGGA	1 cut(s)	344
Aor51HI	AGCGCT	1 cut(s)	642
AoxI	GGCC	2 cut(s)	449, 454
ApeKI	GCWGC	2 cut(s)	146, 279
ApoI	RAATTY	1 cut(s)	62
AspLEI	GCGC	1 cut(s)	643
AspS9I	GGNCC	2 cut(s)	4, 113
AvaII	GGWCC	2 cut(s)	4, 113
BbsI	GAAGAC	1 cut(s)	633
BbvI	GCAGC	2 cut(s)	158, 291
BccI	CCATC	1 cut(s)	359
BciT130I	CCWGG	2 cut(s)	120, 453
BcoDI	GTCTC	2 cut(s)	217, 238
BfaI	CTAG	1 cut(s)	431
BfmI	CTRYAG	1 cut(s)	277
BfoI	RGCGCY	1 cut(s)	644
BisI	GCNGC	2 cut(s)	147, 280
BlsI	GCNGC	2 cut(s)	148, 281
Bme1390I	CCNGG	2 cut(s)	120, 453
Bme18I	GGWCC	2 cut(s)	4, 113
BmeRI	GACNNNNNGTC	1 cut(s)	230
BmgT120I	GGNCC	2 cut(s)	4, 113
BmiI	GGNNCC	2 cut(s)	6, 313
BmrFI	CCNGG	2 cut(s)	120, 453
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	1 cut(s)	291
BmuI	ACTGGG	1 cut(s)	315
BpiI	GAAGAC	1 cut(s)	633
BpmI	CTGGAG	1 cut(s)	576
Bpu10I	CCTNAGC	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	149
Bsa29I	ATCGAT	1 cut(s)	247
BsaJI	CCNNGG	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse1I	ACTGG	3 cut(s)	130, 321, 331
Bse3DI	GCAATG	2 cut(s)	654, 697
BseAI	TCCGGA	1 cut(s)	344
BseBI	CCWGG	2 cut(s)	120, 453
BseCI	ATCGAT	1 cut(s)	247
BseDI	CCNNGG	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMI	GCAATG	2 cut(s)	654, 697
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	3 cut(s)	130, 321, 331
BseXI	GCAGC	2 cut(s)	158, 291
BsgI	GTGCAG	1 cut(s)	472
BshFI	GGCC	2 cut(s)	451, 456
BshVI	ATCGAT	1 cut(s)	247
BsiSI	CCGG	1 cut(s)	345
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmAI	GTCTC	2 cut(s)	217, 238
BsmI	GAATGC	1 cut(s)	659
BsnI	GGCC	2 cut(s)	451, 456
Bsp13I	TCCGGA	1 cut(s)	344
Bsp143I	GATC	2 cut(s)	248, 433
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	1 cut(s)	240
BspANI	GGCC	2 cut(s)	451, 456
BspCNI	CTCAG	1 cut(s)	205
BspDI	ATCGAT	1 cut(s)	247
BspEI	TCCGGA	1 cut(s)	344
BspHI	TCATGA	1 cut(s)	615
BspLI	GGNNCC	2 cut(s)	6, 313
BspMAI	CTGCAG	1 cut(s)	281
BspPI	GGATC	1 cut(s)	428
BsrDI	GCAATG	2 cut(s)	654, 697
BsrI	ACTGG	3 cut(s)	130, 321, 331
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	2 cut(s)	248, 433
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	2 cut(s)	120, 453
Bst4CI	ACNGT	2 cut(s)	228, 495
Bst6I	CTCTTC	1 cut(s)	554
BstAPI	GCANNNNNTGC	1 cut(s)	602
BstDEI	CTNAG	2 cut(s)	213, 218
BstDSI	CCRYGG	1 cut(s)	150
BstH2I	RGCGCY	1 cut(s)	644
BstHHI	GCGC	1 cut(s)	643
BstKTI	GATC	2 cut(s)	251, 436
BstMAI	GTCTC	2 cut(s)	217, 238
BstMBI	GATC	2 cut(s)	248, 433
BstMWI	GCNNNNNNNGC	3 cut(s)	78, 152, 602
BstNI	CCWGG	2 cut(s)	120, 453
BstNSI	RCATGY	2 cut(s)	473, 481
BstSCI	CCNGG	2 cut(s)	118, 451
BstSFI	CTRYAG	1 cut(s)	277
BstV1I	GCAGC	2 cut(s)	158, 291
BstV2I	GAAGAC	1 cut(s)	633
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
Bsu15I	ATCGAT	1 cut(s)	247
BsuRI	GGCC	2 cut(s)	451, 456
BsuTUI	ATCGAT	1 cut(s)	247
BtgI	CCRYGG	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	123, 328
CciI	TCATGA	1 cut(s)	615
CfoI	GCGC	1 cut(s)	643
Cfr13I	GGNCC	2 cut(s)	4, 113
ClaI	ATCGAT	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	5 cut(s)	87, 151, 470, 478, 616
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	2 cut(s)	213, 218
DpnI	GATC	2 cut(s)	250, 435
DpnII	GATC	2 cut(s)	248, 433
DraIII	CACNNNGTG	2 cut(s)	495, 497
DriI	GACNNNNNGTC	1 cut(s)	230
Eam1104I	CTCTTC	1 cut(s)	554
Eam1105I	GACNNNNNGTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	554
Eco130I	CCWWGG	1 cut(s)	150
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	2 cut(s)	4, 113
Eco47III	AGCGCT	1 cut(s)	642
Eco57I	CTGAAG	3 cut(s)	35, 686, 717
EcoRII	CCWGG	2 cut(s)	118, 451
EcoRV	GATATC	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	150
EcoT22I	ATGCAT	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	5 cut(s)	90, 154, 473, 481, 619
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	5 cut(s)	86, 150, 469, 477, 615
Fnu4HI	GCNGC	2 cut(s)	147, 280
Fsp4HI	GCNGC	2 cut(s)	147, 280
FspBI	CTAG	1 cut(s)	431
GlaI	GCGC	1 cut(s)	642
GluI	GCNGC	2 cut(s)	147, 280
GsuI	CTGGAG	1 cut(s)	576
HaeII	RGCGCY	1 cut(s)	644
HaeIII	GGCC	2 cut(s)	451, 456
HapII	CCGG	1 cut(s)	345
HhaI	GCGC	1 cut(s)	643
Hin1II	CATG	5 cut(s)	90, 154, 473, 481, 619
Hin6I	GCGC	1 cut(s)	641
HinP1I	GCGC	1 cut(s)	641
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HindIII	AAGCTT	1 cut(s)	136
HinfI	GANTC	3 cut(s)	501, 589, 651
HpaII	CCGG	1 cut(s)	345
Hpy166II	GTNNAC	3 cut(s)	336, 408, 475
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	4 cut(s)	49, 345, 616, 664
Hpy8I	GTNNAC	3 cut(s)	336, 408, 475
HpyAV	CCTTC	2 cut(s)	286, 641
HpyCH4III	ACNGT	2 cut(s)	228, 495
HpyCH4V	TGCA	8 cut(s)	146, 279, 440, 469, 489, 605, 659, 690
HpyF10VI	GCNNNNNNNGC	3 cut(s)	78, 152, 602
HpyF3I	CTNAG	2 cut(s)	213, 218
Hsp92II	CATG	5 cut(s)	90, 154, 473, 481, 619
HspAI	GCGC	1 cut(s)	641
Kpn2I	TCCGGA	1 cut(s)	344
Kzo9I	GATC	2 cut(s)	248, 433
LmnI	GCTCC	1 cut(s)	187
Lsp1109I	GCAGC	2 cut(s)	158, 291
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	1 cut(s)	431
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	2 cut(s)	250, 435
MboI	GATC	2 cut(s)	248, 433
MboII	GAAGA	8 cut(s)	28, 541, 620, 638, 679, 682, 685, 722
MflI	RGATCY	1 cut(s)	433
MluCI	AATT	6 cut(s)	62, 157, 287, 355, 399, 558
MlyI	GAGTC	2 cut(s)	583, 645
MnlI	CCTC	8 cut(s)	89, 126, 173, 259, 302, 387, 441, 571
Mph1103I	ATGCAT	1 cut(s)	471
MroI	TCCGGA	1 cut(s)	344
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	2 cut(s)	120, 453
Mva1269I	GAATGC	1 cut(s)	659
MvaI	CCWGG	2 cut(s)	120, 453
MwoI	GCNNNNNNNGC	3 cut(s)	78, 152, 602
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	2 cut(s)	248, 433
NlaIII	CATG	5 cut(s)	90, 154, 473, 481, 619
NlaIV	GGNNCC	2 cut(s)	6, 313
NmuCI	GTSAC	1 cut(s)	323
NsiI	ATGCAT	1 cut(s)	471
NspI	RCATGY	2 cut(s)	473, 481
PagI	TCATGA	1 cut(s)	615
PciI	ACATGT	1 cut(s)	477
PctI	GAATGC	1 cut(s)	659
PfeI	GAWTC	1 cut(s)	501
PkrI	GCNGC	2 cut(s)	148, 281
PleI	GAGTC	2 cut(s)	583, 645
PpsI	GAGTC	2 cut(s)	583, 645
PscI	ACATGT	1 cut(s)	477
Psp6I	CCWGG	2 cut(s)	118, 451
PspGI	CCWGG	2 cut(s)	118, 451
PspN4I	GGNNCC	2 cut(s)	6, 313
PspPI	GGNCC	2 cut(s)	4, 113
PstI	CTGCAG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	433
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SatI	GCNGC	2 cut(s)	147, 280
Sau3AI	GATC	2 cut(s)	248, 433
Sau96I	GGNCC	2 cut(s)	4, 113
SchI	GAGTC	2 cut(s)	583, 645
ScrFI	CCNGG	2 cut(s)	120, 453
SetI	ASST	9 cut(s)	47, 140, 165, 192, 219, 383, 432, 528, 582
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	1 cut(s)	277
SinI	GGWCC	2 cut(s)	4, 113
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	6 cut(s)	62, 157, 287, 355, 399, 558
SsiI	CCGC	1 cut(s)	240
SspMI	CTAG	1 cut(s)	431
StyD4I	CCNGG	2 cut(s)	118, 451
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	2 cut(s)	228, 495
TaqI	TCGA	3 cut(s)	171, 247, 285
TasI	AATT	6 cut(s)	62, 157, 287, 355, 399, 558
TfiI	GAWTC	1 cut(s)	501
TscAI	CASTG	2 cut(s)	130, 328
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	2 cut(s)	146, 279
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	6 cut(s)	349, 559, 570, 632, 698, 744
TspRI	CASTG	2 cut(s)	130, 328
VpaK11BI	GGWCC	2 cut(s)	4, 113
XapI	RAATTY	1 cut(s)	62
XceI	RCATGY	2 cut(s)	473, 481
XcmI	CCANNNNNNNNNTGG	1 cut(s)	640
XspI	CTAG	1 cut(s)	431
Zsp2I	ATGCAT	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.