Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0009761

Physical Location & Seq

Genomic Coordinates Forward (+)

35543695 .. 35543979

Gene Structure 285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG339900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGATATGCATGTTCACATGTCCTACTGCACACCGTGTGGATTCAAAACCCTTGCTCATAACTACCTTAAAGTAAAAACTCATCATCTCTTCAATGAAATAGAAACATTCATAAAGGAGGTTGATACGACTCCAGCAGAGATTGCAGAAGAACTCATGAAAAGTGAAGACACCGATGTAGCGCTGGAAGGACTCATTGCATTCCTGAAGAAGAAGAAAGAGATGAACTGCAATGCTGAAGCCAATGTTGAAGAAACAATAGAAAATAATGAACTAAAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

94

Amino Acids

10.82

Weight (kDa)

4.95

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_lid_At3g28540	PF25568	10 - 79	2.6e-26	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Orthologous Genes (Group: OG0009761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50930
fragaria_vesca	FvH4_4g24040
malus_domestica	MD13G1112300.v1.1
prunus_persica	Prupe.1G229600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0430751 RchiOBHm_Chr7g0222361
rosa_laevigata	RLG00000002067 RLG00000006952
rosa_roxburghii	Rroxscaffold_3G00237040 Rroxscaffold_5G00372460
rosa_rugosa	Rorug04G0245600 Rorug07G0207700
rosa_samantha	Rh4AG301600 Rh4BG309500 Rh4BG309600 Rh7AG350200 Rh7BG339800 Rh7BG339900 Rh7BG340500
rosa_wichuraiana	Rw4G026210 Rw7G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	227, 258
AdeI	CACNNNGTG	2 cut(s)	36, 38
AfeI	AGCGCT	1 cut(s)	183
AflIII	ACRYGT	1 cut(s)	18
AgsI	TTSAA	3 cut(s)	46, 94, 251
Aor51HI	AGCGCT	1 cut(s)	183
AspLEI	GCGC	1 cut(s)	184
BbsI	GAAGAC	1 cut(s)	174
BfoI	RGCGCY	1 cut(s)	185
BpiI	GAAGAC	1 cut(s)	174
BpmI	CTGGAG	1 cut(s)	117
Bse3DI	GCAATG	2 cut(s)	195, 238
BseMI	GCAATG	2 cut(s)	195, 238
BsgI	GTGCAG	1 cut(s)	13
BsmI	GAATGC	1 cut(s)	200
BspHI	TCATGA	1 cut(s)	156
BsrDI	GCAATG	2 cut(s)	195, 238
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	95
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNSI	RCATGY	2 cut(s)	14, 22
BstV2I	GAAGAC	1 cut(s)	174
CciI	TCATGA	1 cut(s)	156
CfoI	GCGC	1 cut(s)	184
CviAII	CATG	3 cut(s)	11, 19, 157
CviJI	RGCY	1 cut(s)	242
CviKI_1	RGCY	1 cut(s)	242
DraIII	CACNNNGTG	2 cut(s)	36, 38
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco47III	AGCGCT	1 cut(s)	183
Eco57I	CTGAAG	2 cut(s)	227, 258
EcoT22I	ATGCAT	1 cut(s)	12
FaeI	CATG	3 cut(s)	14, 22, 160
FaiI	YATR	6 cut(s)	8, 12, 20, 60, 113, 158
FatI	CATG	3 cut(s)	10, 18, 156
GlaI	GCGC	1 cut(s)	183
GsuI	CTGGAG	1 cut(s)	117
HaeII	RGCGCY	1 cut(s)	185
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	3 cut(s)	14, 22, 160
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HinfI	GANTC	3 cut(s)	42, 130, 192
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188III	TCNNGA	2 cut(s)	157, 205
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4V	TGCA	5 cut(s)	10, 30, 146, 200, 231
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
Hsp92II	CATG	3 cut(s)	14, 22, 160
HspAI	GCGC	1 cut(s)	182
LpnPI	CCDG	3 cut(s)	147, 170, 218
MboII	GAAGA	7 cut(s)	82, 161, 179, 220, 223, 226, 263
MlyI	GAGTC	2 cut(s)	124, 186
MnlI	CCTC	1 cut(s)	112
Mph1103I	ATGCAT	1 cut(s)	12
MseI	TTAA	1 cut(s)	69
Mva1269I	GAATGC	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	143
NlaIII	CATG	3 cut(s)	14, 22, 160
NsiI	ATGCAT	1 cut(s)	12
NspI	RCATGY	2 cut(s)	14, 22
PagI	TCATGA	1 cut(s)	156
PciI	ACATGT	1 cut(s)	18
PctI	GAATGC	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	42
PleI	GAGTC	2 cut(s)	124, 186
PpsI	GAGTC	2 cut(s)	124, 186
PscI	ACATGT	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	69
SchI	GAGTC	2 cut(s)	124, 186
SetI	ASST	2 cut(s)	69, 123
SgeI	CNNG	8 cut(s)	23, 31, 48, 65, 146, 169, 197, 217
TaaI	ACNGT	1 cut(s)	36
TfiI	GAWTC	1 cut(s)	42
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TspDTI	ATGAA	5 cut(s)	100, 111, 173, 239, 285
XceI	RCATGY	2 cut(s)	14, 22
Zsp2I	ATGCAT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.