Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009761

Physical Location & Seq

Genomic Coordinates Reverse (-)

8158813 .. 8159638

Gene Structure 826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1112300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGATCCCAAGCTTAAGGAGGAGTTGATCAATGACTTGGACAGGTTTGTGAAGCGGAAGGAGTTTTACGGGAGAGTAGGCAAGGCATGGAAACGCGGGTACTTGTTGTATGGTCCTCCCGGTACAGGAAAGTCCAGCTTGATCGCGGCCATGGCTAATTACCTTAAGTTTGACGTCTATGACTTGGAGCTTATGCAAATTCGTAGCAACTCCGAGCTCAGGAGGCTGTTAGTCTCCACTGCAAATCGATCGATACAAGTAATTGAAGATATTGATTGCAGCATTGAATTGAGTGACCGAAAACTTGGAGGAGGCAGGTTGCTTAATTTCACTGATGGGCTGTGGTCAAGCTGCGGAGATGAGAGGATTATCGTGTTTACGACAAATTACAAGGAGAAACTAGATCCTGCATTGTTGAGACCGGGGCGCATGGATATGCACATTCACATGTCCTACTGCACACCAAGTGGATTCAAGATCCTTGCTTCTAACTACCTCGGAATAAAAACTCACCATCTCTTCGACGAAATTGAAGAATTCTTAAAGCAGCTGGAGGTGACCCCTGCAGAGATTGCAGAACAACTCATGAAAAGTGAAGAAGCCGATAAGGCGCTTGCAGGACTCGCTGCATTCCTCAAGAACAAGAAAACGATGAACTGCAATGCAGAAGCCAAGATTGAAGAAACAAGAGACAATGAACAAGAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

237

Amino Acids

26.95

Weight (kDa)

6.16

Isoelectric Point (pI)

51.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	34 - 151	9.8e-18	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	153 - 219	2.8e-25	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50930
fragaria_vesca	FvH4_4g24040
malus_domestica	MD13G1112300.v1.1
prunus_persica	Prupe.1G229600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0430751 RchiOBHm_Chr7g0222361
rosa_laevigata	RLG00000002067 RLG00000006952
rosa_roxburghii	Rroxscaffold_3G00237040 Rroxscaffold_5G00372460
rosa_rugosa	Rorug04G0245600 Rorug07G0207700
rosa_samantha	Rh4AG301600 Rh4BG309500 Rh4BG309600 Rh7AG350200 Rh7BG339800 Rh7BG339900 Rh7BG340500
rosa_wichuraiana	Rw4G026210 Rw7G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	177
Acc36I	ACCTGC	1 cut(s)	306
AccII	CGCG	2 cut(s)	96, 146
AciI	CCGC	4 cut(s)	55, 96, 146, 354
AclWI	GGATC	3 cut(s)	12, 398, 472
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	2 cut(s)	198, 536
AcyI	GRCGYC	1 cut(s)	174
AdeI	CACNNNGTG	1 cut(s)	467
AfaI	GTAC	2 cut(s)	101, 124
AfiI	CCNNNNNNNGG	2 cut(s)	125, 219
AflII	CTTAAG	2 cut(s)	14, 164
AflIII	ACRYGT	1 cut(s)	447
AgsI	TTSAA	5 cut(s)	266, 287, 475, 533, 680
AluBI	AGCT	6 cut(s)	13, 138, 190, 217, 351, 550
AluI	AGCT	6 cut(s)	13, 138, 190, 217, 351, 550
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	3 cut(s)	238, 412, 684
AlwI	GGATC	3 cut(s)	12, 398, 472
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	4 cut(s)	279, 351, 547, 626
ApoI	RAATTY	2 cut(s)	198, 536
AspLEI	GCGC	2 cut(s)	429, 613
AspS9I	GGNCC	1 cut(s)	113
AsuC2I	CCSGG	2 cut(s)	120, 423
AsuHPI	GGTGA	2 cut(s)	503, 568
AvaII	GGWCC	1 cut(s)	113
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	219
BarI	GAAGNNNNNNTAC	2 cut(s)	50, 82
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	4 cut(s)	291, 338, 559, 613
BccI	CCATC	2 cut(s)	329, 522
BcgI	CGANNNNNNTGC	2 cut(s)	231, 265
BclI	TGATCA	1 cut(s)	27
BcnI	CCSGG	2 cut(s)	120, 423
BcoDI	GTCTC	3 cut(s)	238, 412, 684
BfaI	CTAG	1 cut(s)	401
BfmI	CTRYAG	1 cut(s)	564
BfoI	RGCGCY	1 cut(s)	614
BfrI	CTTAAG	2 cut(s)	14, 164
BfuAI	ACCTGC	1 cut(s)	306
BglI	GCCNNNNNGGC	1 cut(s)	608
BisI	GCNGC	5 cut(s)	147, 280, 352, 548, 627
BlsI	GCNGC	5 cut(s)	148, 281, 353, 549, 628
Bme1390I	CCNGG	2 cut(s)	120, 423
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	120, 423
BpmI	CTGGAG	1 cut(s)	572
Bpu10I	CCTNAGC	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	620
BpuMI	CCSGG	2 cut(s)	120, 423
Bsa29I	ATCGAT	2 cut(s)	247, 251
BsaHI	GRCGYC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	412
BsaJI	CCNNGG	3 cut(s)	150, 422, 496
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 219
Bse3DI	GCAATG	1 cut(s)	667
BseCI	ATCGAT	2 cut(s)	247, 251
BseDI	CCNNGG	3 cut(s)	150, 422, 496
BseLI	CCNNNNNNNGG	2 cut(s)	125, 219
BseMI	GCAATG	1 cut(s)	667
BseMII	CTCAG	1 cut(s)	232
BseRI	GAGGAG	2 cut(s)	35, 324
BseXI	GCAGC	4 cut(s)	291, 338, 559, 613
BsgI	GTGCAG	1 cut(s)	442
Bsh1236I	CGCG	2 cut(s)	96, 146
Bsh1285I	CGRYCG	1 cut(s)	251
BshFI	GGCC	1 cut(s)	149
BshVI	ATCGAT	2 cut(s)	247, 251
BsiEI	CGRYCG	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	2 cut(s)	120, 422
BslI	CCNNNNNNNGG	2 cut(s)	125, 219
BsmAI	GTCTC	3 cut(s)	238, 412, 684
BsmI	GAATGC	1 cut(s)	629
BsnI	GGCC	1 cut(s)	149
Bso31I	GGTCTC	1 cut(s)	412
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	6 cut(s)	4, 27, 141, 248, 403, 477
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	4 cut(s)	55, 96, 146, 354
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	231
BspDI	ATCGAT	2 cut(s)	247, 251
BspFNI	CGCG	2 cut(s)	96, 146
BspHI	TCATGA	1 cut(s)	585
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	568
BspMI	ACCTGC	1 cut(s)	306
BspPI	GGATC	3 cut(s)	12, 398, 472
BspTI	CTTAAG	2 cut(s)	14, 164
BspTNI	GGTCTC	1 cut(s)	412
BsrDI	GCAATG	1 cut(s)	667
BssECI	CCNNGG	3 cut(s)	150, 422, 496
BssMI	GATC	6 cut(s)	4, 27, 141, 248, 403, 477
BssNI	GRCGYC	1 cut(s)	174
BssT1I	CCWWGG	1 cut(s)	150
Bst6I	CTCTTC	1 cut(s)	524
BstACI	GRCGYC	1 cut(s)	174
BstAFI	CTTAAG	2 cut(s)	14, 164
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstC8I	GCNNGC	1 cut(s)	615
BstDEI	CTNAG	1 cut(s)	218
BstDSI	CCRYGG	1 cut(s)	150
BstEII	GGTNACC	1 cut(s)	556
BstFNI	CGCG	2 cut(s)	96, 146
BstH2I	RGCGCY	1 cut(s)	614
BstHHI	GCGC	2 cut(s)	429, 613
BstKTI	GATC	6 cut(s)	7, 30, 144, 251, 406, 480
BstMAI	GTCTC	3 cut(s)	238, 412, 684
BstMBI	GATC	6 cut(s)	4, 27, 141, 248, 403, 477
BstMCI	CGRYCG	1 cut(s)	251
BstMWI	GCNNNNNNNGC	5 cut(s)	152, 223, 572, 608, 623
BstNSI	RCATGY	1 cut(s)	451
BstPI	GGTNACC	1 cut(s)	556
BstSCI	CCNGG	2 cut(s)	118, 421
BstSFI	CTRYAG	1 cut(s)	564
BstUI	CGCG	2 cut(s)	96, 146
BstV1I	GCAGC	4 cut(s)	291, 338, 559, 613
BstX2I	RGATCY	3 cut(s)	4, 403, 477
BstYI	RGATCY	3 cut(s)	4, 403, 477
Bsu15I	ATCGAT	2 cut(s)	247, 251
BsuRI	GGCC	1 cut(s)	149
BsuTUI	ATCGAT	2 cut(s)	247, 251
BtgI	CCRYGG	1 cut(s)	150
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	2 cut(s)	237, 330
BveI	ACCTGC	1 cut(s)	306
Cac8I	GCNNGC	1 cut(s)	615
CciI	TCATGA	1 cut(s)	585
CfoI	GCGC	2 cut(s)	429, 613
Cfr13I	GGNCC	1 cut(s)	113
ClaI	ATCGAT	2 cut(s)	247, 251
Csp6I	GTAC	2 cut(s)	100, 123
CviAII	CATG	5 cut(s)	87, 151, 430, 448, 586
CviQI	GTAC	2 cut(s)	100, 123
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	6 cut(s)	6, 29, 143, 250, 405, 479
DpnII	GATC	6 cut(s)	4, 27, 141, 248, 403, 477
DraIII	CACNNNGTG	1 cut(s)	467
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	524
EarI	CTCTTC	1 cut(s)	524
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	412
Eco47I	GGWCC	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	217
Eco91I	GGTNACC	1 cut(s)	556
EcoICRI	GAGCTC	1 cut(s)	217
EcoO65I	GGTNACC	1 cut(s)	556
EcoRI	GAATTC	1 cut(s)	536
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	5 cut(s)	90, 154, 433, 451, 589
FaiI	YATR	9 cut(s)	88, 111, 152, 180, 194, 431, 437, 449, 587
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	5 cut(s)	86, 150, 429, 447, 585
FauI	CCCGC	1 cut(s)	89
FbaI	TGATCA	1 cut(s)	27
Fnu4HI	GCNGC	5 cut(s)	147, 280, 352, 548, 627
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	5 cut(s)	147, 280, 352, 548, 627
FspBI	CTAG	1 cut(s)	401
GlaI	GCGC	2 cut(s)	428, 612
GluI	GCNGC	5 cut(s)	147, 280, 352, 548, 627
GsuI	CTGGAG	1 cut(s)	572
HaeII	RGCGCY	1 cut(s)	614
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	2 cut(s)	120, 422
HhaI	GCGC	2 cut(s)	429, 613
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	5 cut(s)	90, 154, 433, 451, 589
Hin6I	GCGC	2 cut(s)	427, 611
HinP1I	GCGC	2 cut(s)	427, 611
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	2 cut(s)	471, 621
HpaII	CCGG	2 cut(s)	120, 422
HphI	GGTGA	2 cut(s)	503, 568
Hpy166II	GTNNAC	1 cut(s)	378
Hpy188I	TCNGA	2 cut(s)	214, 500
Hpy188III	TCNNGA	4 cut(s)	220, 475, 586, 637
Hpy8I	GTNNAC	1 cut(s)	378
Hpy99I	CGWCG	1 cut(s)	527
HpyAV	CCTTC	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	5 cut(s)	152, 223, 572, 608, 623
HpyF3I	CTNAG	1 cut(s)	218
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	5 cut(s)	90, 154, 433, 451, 589
HspAI	GCGC	2 cut(s)	427, 611
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	6 cut(s)	4, 27, 141, 248, 403, 477
LmnI	GCTCC	1 cut(s)	187
Lsp1109I	GCAGC	4 cut(s)	291, 338, 559, 613
MaeI	CTAG	1 cut(s)	401
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	2 cut(s)	293, 556
MalI	GATC	6 cut(s)	6, 29, 143, 250, 405, 479
MboI	GATC	6 cut(s)	4, 27, 141, 248, 403, 477
MboII	GAAGA	5 cut(s)	278, 511, 545, 608, 692
MflI	RGATCY	3 cut(s)	4, 403, 477
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	8 cut(s)	157, 198, 261, 287, 325, 385, 528, 536
MlyI	GAGTC	1 cut(s)	615
MnlI	CCTC	9 cut(s)	13, 126, 216, 302, 305, 357, 506, 547, 644
MseI	TTAA	4 cut(s)	15, 165, 324, 542
MslI	CAYNNNNRTG	2 cut(s)	434, 446
MspA1I	CMGCKG	1 cut(s)	550
MspCI	CTTAAG	2 cut(s)	14, 164
MspI	CCGG	2 cut(s)	120, 422
MspR9I	CCNGG	2 cut(s)	120, 423
Mva1269I	GAATGC	1 cut(s)	629
MvnI	CGCG	2 cut(s)	96, 146
MwoI	GCNNNNNNNGC	5 cut(s)	152, 223, 572, 608, 623
NciI	CCSGG	2 cut(s)	120, 423
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	6 cut(s)	4, 27, 141, 248, 403, 477
NlaIII	CATG	5 cut(s)	90, 154, 433, 451, 589
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	293, 556
NspI	RCATGY	1 cut(s)	451
PagI	TCATGA	1 cut(s)	585
PciI	ACATGT	1 cut(s)	447
PctI	GAATGC	1 cut(s)	629
PfeI	GAWTC	1 cut(s)	471
PkrI	GCNGC	5 cut(s)	148, 281, 353, 549, 628
Ple19I	CGATCG	1 cut(s)	251
PleI	GAGTC	1 cut(s)	615
PpsI	GAGTC	1 cut(s)	615
PscI	ACATGT	1 cut(s)	447
Psp124BI	GAGCTC	1 cut(s)	219
PspEI	GGTNACC	1 cut(s)	556
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	568
PsuI	RGATCY	3 cut(s)	4, 403, 477
PvuI	CGATCG	1 cut(s)	251
PvuII	CAGCTG	1 cut(s)	550
RsaI	GTAC	2 cut(s)	101, 124
RsaNI	GTAC	2 cut(s)	100, 123
RseI	CAYNNNNRTG	2 cut(s)	434, 446
SacI	GAGCTC	1 cut(s)	219
SaqAI	TTAA	4 cut(s)	15, 165, 324, 542
SatI	GCNGC	5 cut(s)	147, 280, 352, 548, 627
Sau3AI	GATC	6 cut(s)	4, 27, 141, 248, 403, 477
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	1 cut(s)	615
ScrFI	CCNGG	2 cut(s)	120, 423
SduI	GDGCHC	1 cut(s)	219
SfcI	CTRYAG	1 cut(s)	564
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	2 cut(s)	434, 446
SmlI	CTYRAG	3 cut(s)	14, 164, 635
SmoI	CTYRAG	3 cut(s)	14, 164, 635
Sse9I	AATT	8 cut(s)	157, 198, 261, 287, 325, 385, 528, 536
SsiI	CCGC	4 cut(s)	55, 96, 146, 354
SspMI	CTAG	1 cut(s)	401
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	118, 421
StyI	CCWWGG	1 cut(s)	150
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	3 cut(s)	247, 251, 522
TaqII	GACCGA	1 cut(s)	312
TasI	AATT	8 cut(s)	157, 198, 261, 287, 325, 385, 528, 536
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	471
Tru1I	TTAA	4 cut(s)	15, 165, 324, 542
Tru9I	TTAA	4 cut(s)	15, 165, 324, 542
TscAI	CASTG	2 cut(s)	244, 337
TseFI	GTSAC	2 cut(s)	293, 556
TseI	GCWGC	4 cut(s)	279, 351, 547, 626
Tsp45I	GTSAC	2 cut(s)	293, 556
TspDTI	ATGAA	3 cut(s)	602, 668, 711
TspRI	CASTG	2 cut(s)	244, 337
Vha464I	CTTAAG	2 cut(s)	14, 164
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	2 cut(s)	198, 536
XceI	RCATGY	1 cut(s)	451
XspI	CTAG	1 cut(s)	401
ZraI	GACGTC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.