Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009761

Physical Location & Seq

Genomic Coordinates Reverse (-)

47820608 .. 47821842

Gene Structure 1235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG309600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGTTTTCTCTAACAAGCATGCCTTCAACAACATCAGTTCTATCAACCTACACCGCATTTGCTGCTGCAGCAATGCTGATCAGGACAGTGATCAGTGACGTCCAGACTATGGTCGGCCAGTTGATACCTCAAAAACTCCAGGACAAAATCATTGCCACACTTGCAGGCCTATTCGGTAACCTTCCTAATTCTCAAATGACTCTTATCATTGATGAAAGCAATGGTCTCTCTATCAATGAAGTTTACCAGGATTCTTCAAGGATCACTGCCTCAATTGATCAACTTAAGGTTTCCAAGTCCCCACGCCAAAACAACTTCTCTGTTACCATAAACAAAGGCGAGAAGCTAACTGACGAGTTCGAAGGAATGCAATTGAGGTGGGAATTCTGTTGTTTTGAAACGAAACAGGCGAATATGGACTATGAAAGCTATTGCTCATCAACAGAGGTAGTAGAGCATAAGTCAATTCAGCTCAGTTTCCACAAGCAATACAGAGAAAAGGTATTAGAAACTTACCTGCCATATGTAGTGCAAAGATCAAAAGCAATTAAAGAGGAAAACAAGGTGGTGAGGCTGCATGCACTTGGAAACTTTGGTGGAGAATGTTTGATCGGTCCCTGGGGTTCAGTCATCTTTGAACATCCATCAACTTTTGACACATTGGCAATGGACCCAATGCTGAAGAACGAGTTGATTGCTGACTTGGACAGGTTTGTGAAGCGAAAGGAATTTTATGGCAGAGTAGGCAAGGCATGGAAACGAGGGTACTTGTTGTATGGTCCTCCTGGCACAGGAAAGTCGAGCTTGATTGCAGCCATGGCTAATCACCTCAAGTTTGATATCTATGATTTGGAGCTTACATATTTACACAGCAACTCTGAGCTTAGGAGACTGTTAGTCTCCACCGCAAATCGATCAATCATAGTGATTGAGGATATTGACTGCAGCATCGAATTGAATGACAGACAAGTTAGAGGAACCAACCCCAGTGACAGCCAGGTATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

335

Amino Acids

37.83

Weight (kDa)

6.12

Isoelectric Point (pI)

35.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	42 - 131	3.4e-16	Domain associated at C-terminal with AAA
AAA	PF00004	256 - 320	1.3e-09	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50930
fragaria_vesca	FvH4_4g24040
malus_domestica	MD13G1112300.v1.1
prunus_persica	Prupe.1G229600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0430751 RchiOBHm_Chr7g0222361
rosa_laevigata	RLG00000002067 RLG00000006952
rosa_roxburghii	Rroxscaffold_3G00237040 Rroxscaffold_5G00372460
rosa_rugosa	Rorug04G0245600 Rorug07G0207700
rosa_samantha	Rh4AG301600 Rh4BG309500 Rh4BG309600 Rh7AG350200 Rh7BG339800 Rh7BG339900 Rh7BG340500
rosa_wichuraiana	Rw4G026210 Rw7G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	102
Acc36I	ACCTGC	1 cut(s)	525
AccB7I	CCANNNNNTGG	1 cut(s)	109
AciI	CCGC	2 cut(s)	54, 906
AclWI	GGATC	1 cut(s)	269
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	2 cut(s)	383, 728
AcuI	CTGAAG	1 cut(s)	701
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	1 cut(s)	767
AfiI	CCNNNNNNNGG	2 cut(s)	109, 791
AflII	CTTAAG	1 cut(s)	284
AgsI	TTSAA	5 cut(s)	27, 258, 398, 638, 958
AhdI	GACNNNNNGTC	1 cut(s)	896
AjnI	CCWGG	5 cut(s)	138, 246, 617, 784, 996
AluBI	AGCT	6 cut(s)	346, 429, 472, 804, 856, 883
AluI	AGCT	6 cut(s)	346, 429, 472, 804, 856, 883
Alw26I	GTCTC	3 cut(s)	230, 883, 904
AlwI	GGATC	1 cut(s)	269
AoxI	GGCC	2 cut(s)	115, 166
ApeKI	GCWGC	6 cut(s)	62, 65, 68, 574, 812, 945
ApoI	RAATTY	2 cut(s)	383, 728
AspS9I	GGNCC	3 cut(s)	614, 670, 779
AsuHPI	GGTGA	2 cut(s)	580, 818
AsuII	TTCGAA	1 cut(s)	360
AvaII	GGWCC	3 cut(s)	614, 670, 779
BbvI	GCAGC	6 cut(s)	49, 52, 80, 561, 824, 957
BccI	CCATC	1 cut(s)	652
BcgI	CGANNNNNNTGC	2 cut(s)	677, 711
BciT130I	CCWGG	5 cut(s)	140, 248, 619, 786, 998
BclI	TGATCA	3 cut(s)	78, 90, 277
BcoDI	GTCTC	3 cut(s)	230, 883, 904
BfmI	CTRYAG	2 cut(s)	66, 943
BfrI	CTTAAG	1 cut(s)	284
BfuAI	ACCTGC	1 cut(s)	525
BisI	GCNGC	6 cut(s)	63, 66, 69, 575, 813, 946
BlsI	GCNGC	6 cut(s)	64, 67, 70, 576, 814, 947
Bme1390I	CCNGG	5 cut(s)	140, 248, 619, 786, 998
Bme18I	GGWCC	3 cut(s)	614, 670, 779
BmeRI	GACNNNNNGTC	1 cut(s)	896
BmgT120I	GGNCC	3 cut(s)	614, 670, 779
BmiI	GGNNCC	3 cut(s)	616, 672, 979
BmrFI	CCNGG	5 cut(s)	140, 248, 619, 786, 998
BmrI	ACTGGG	1 cut(s)	981
BmsI	GCATC	1 cut(s)	957
BmuI	ACTGGG	1 cut(s)	981
BoxI	GACNNNNGTC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	122
Bpu10I	CCTNAGC	1 cut(s)	884
Bpu14I	TTCGAA	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	815
Bsa29I	ATCGAT	1 cut(s)	913
BsaHI	GRCGYC	1 cut(s)	99
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	3 cut(s)	617, 618, 816
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 791
Bse1I	ACTGG	2 cut(s)	118, 987
Bse3DI	GCAATG	4 cut(s)	78, 150, 226, 672
BseBI	CCWGG	5 cut(s)	140, 248, 619, 786, 998
BseCI	ATCGAT	1 cut(s)	913
BseDI	CCNNGG	3 cut(s)	617, 618, 816
BseGI	GGATG	1 cut(s)	640
BseLI	CCNNNNNNNGG	2 cut(s)	109, 791
BseMI	GCAATG	4 cut(s)	78, 150, 226, 672
BseMII	CTCAG	2 cut(s)	487, 870
BseNI	ACTGG	2 cut(s)	118, 987
BseXI	GCAGC	6 cut(s)	49, 52, 80, 561, 824, 957
BshFI	GGCC	2 cut(s)	117, 168
BshVI	ATCGAT	1 cut(s)	913
BslFI	GGGAC	2 cut(s)	283, 600
BslI	CCNNNNNNNGG	2 cut(s)	109, 791
BsmAI	GTCTC	3 cut(s)	230, 883, 904
BsmFI	GGGAC	2 cut(s)	283, 600
BsmI	GAATGC	1 cut(s)	372
BsnI	GGCC	2 cut(s)	117, 168
Bso31I	GGTCTC	1 cut(s)	230
Bsp119I	TTCGAA	1 cut(s)	360
Bsp143I	GATC	7 cut(s)	78, 90, 261, 277, 536, 609, 914
Bsp19I	CCATGG	1 cut(s)	816
BspACI	CCGC	2 cut(s)	54, 906
BspANI	GGCC	2 cut(s)	117, 168
BspCNI	CTCAG	2 cut(s)	486, 871
BspDI	ATCGAT	1 cut(s)	913
BspLI	GGNNCC	3 cut(s)	616, 672, 979
BspMAI	CTGCAG	2 cut(s)	70, 947
BspMI	ACCTGC	1 cut(s)	525
BspPI	GGATC	1 cut(s)	269
BspT104I	TTCGAA	1 cut(s)	360
BspTI	CTTAAG	1 cut(s)	284
BspTNI	GGTCTC	1 cut(s)	230
BsrDI	GCAATG	4 cut(s)	78, 150, 226, 672
BsrI	ACTGG	2 cut(s)	118, 987
BssECI	CCNNGG	3 cut(s)	617, 618, 816
BssMI	GATC	7 cut(s)	78, 90, 261, 277, 536, 609, 914
BssNI	GRCGYC	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	816
Bst2UI	CCWGG	5 cut(s)	140, 248, 619, 786, 998
Bst4CI	ACNGT	2 cut(s)	88, 894
BstACI	GRCGYC	1 cut(s)	99
BstAFI	CTTAAG	1 cut(s)	284
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstBI	TTCGAA	1 cut(s)	360
BstC8I	GCNNGC	3 cut(s)	20, 166, 579
BstDEI	CTNAG	3 cut(s)	473, 879, 884
BstDSI	CCRYGG	1 cut(s)	816
BstEII	GGTNACC	1 cut(s)	176
BstENI	CCTNNNNNAGG	1 cut(s)	789
BstF5I	GGATG	1 cut(s)	640
BstKTI	GATC	7 cut(s)	81, 93, 264, 280, 539, 612, 917
BstMAI	GTCTC	3 cut(s)	230, 883, 904
BstMBI	GATC	7 cut(s)	78, 90, 261, 277, 536, 609, 914
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 68, 161, 744, 818
BstNI	CCWGG	5 cut(s)	140, 248, 619, 786, 998
BstNSI	RCATGY	2 cut(s)	22, 581
BstPAI	GACNNNNGTC	1 cut(s)	110
BstPI	GGTNACC	1 cut(s)	176
BstSCI	CCNGG	5 cut(s)	138, 246, 617, 784, 996
BstSFI	CTRYAG	2 cut(s)	66, 943
BstV1I	GCAGC	6 cut(s)	49, 52, 80, 561, 824, 957
Bsu15I	ATCGAT	1 cut(s)	913
BsuRI	GGCC	2 cut(s)	117, 168
BsuTUI	ATCGAT	1 cut(s)	913
BtgI	CCRYGG	1 cut(s)	816
BtsCI	GGATG	1 cut(s)	640
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	4 cut(s)	93, 100, 264, 994
BveI	ACCTGC	1 cut(s)	525
Cac8I	GCNNGC	3 cut(s)	20, 166, 579
Cfr13I	GGNCC	3 cut(s)	614, 670, 779
ClaI	ATCGAT	1 cut(s)	913
Csp6I	GTAC	1 cut(s)	766
CspCI	CAANNNNNGTGG	2 cut(s)	359, 394
CviAII	CATG	4 cut(s)	19, 578, 753, 817
CviQI	GTAC	1 cut(s)	766
DdeI	CTNAG	3 cut(s)	473, 879, 884
DpnI	GATC	7 cut(s)	80, 92, 263, 279, 538, 611, 916
DpnII	GATC	7 cut(s)	78, 90, 261, 277, 536, 609, 914
DriI	GACNNNNNGTC	1 cut(s)	896
EaeI	YGGCCR	1 cut(s)	115
Eam1105I	GACNNNNNGTC	1 cut(s)	896
Eco130I	CCWWGG	1 cut(s)	816
Eco147I	AGGCCT	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	230
Eco32I	GATATC	1 cut(s)	841
Eco47I	GGWCC	3 cut(s)	614, 670, 779
Eco57I	CTGAAG	1 cut(s)	701
Eco91I	GGTNACC	1 cut(s)	176
EcoNI	CCTNNNNNAGG	1 cut(s)	789
EcoO65I	GGTNACC	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	383
EcoRII	CCWGG	5 cut(s)	138, 246, 617, 784, 996
EcoRV	GATATC	1 cut(s)	841
EcoT14I	CCWWGG	1 cut(s)	816
ErhI	CCWWGG	1 cut(s)	816
FaeI	CATG	4 cut(s)	22, 581, 756, 820
FalI	AAGNNNNNCTT	4 cut(s)	7, 39, 788, 820
FaqI	GGGAC	2 cut(s)	283, 600
FatI	CATG	4 cut(s)	18, 577, 752, 816
FauNDI	CATATG	1 cut(s)	523
FbaI	TGATCA	3 cut(s)	78, 90, 277
Fnu4HI	GCNGC	6 cut(s)	63, 66, 69, 575, 813, 946
FokI	GGATG	1 cut(s)	627
Fsp4HI	GCNGC	6 cut(s)	63, 66, 69, 575, 813, 946
GluI	GCNGC	6 cut(s)	63, 66, 69, 575, 813, 946
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	2 cut(s)	117, 168
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	4 cut(s)	22, 581, 756, 820
HinfI	GANTC	2 cut(s)	199, 251
HphI	GGTGA	2 cut(s)	580, 818
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	880
Hpy188III	TCNNGA	2 cut(s)	82, 103
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	3 cut(s)	33, 191, 356
HpyCH4III	ACNGT	2 cut(s)	88, 894
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	8 cut(s)	68, 164, 370, 532, 577, 581, 812, 945
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 68, 161, 744, 818
HpyF3I	CTNAG	3 cut(s)	473, 879, 884
HpySE526I	ACGT	1 cut(s)	99
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	4 cut(s)	22, 581, 756, 820
Ksp22I	TGATCA	3 cut(s)	78, 90, 277
Kzo9I	GATC	7 cut(s)	78, 90, 261, 277, 536, 609, 914
LmnI	GCTCC	1 cut(s)	853
Lsp1109I	GCAGC	6 cut(s)	49, 52, 80, 561, 824, 957
LweI	GCATC	1 cut(s)	957
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	4 cut(s)	95, 176, 322, 989
MalI	GATC	7 cut(s)	80, 92, 263, 279, 538, 611, 916
MboI	GATC	7 cut(s)	78, 90, 261, 277, 536, 609, 914
MboII	GAAGA	2 cut(s)	246, 694
MfeI	CAATTG	2 cut(s)	273, 371
MluCI	AATT	8 cut(s)	187, 273, 371, 383, 465, 546, 728, 953
MlyI	GAGTC	1 cut(s)	193
MseI	TTAA	2 cut(s)	285, 549
MspCI	CTTAAG	1 cut(s)	284
MspR9I	CCNGG	5 cut(s)	140, 248, 619, 786, 998
MunI	CAATTG	2 cut(s)	273, 371
Mva1269I	GAATGC	1 cut(s)	372
MvaI	CCWGG	5 cut(s)	140, 248, 619, 786, 998
MwoI	GCNNNNNNNGC	5 cut(s)	62, 68, 161, 744, 818
NcoI	CCATGG	1 cut(s)	816
NdeI	CATATG	1 cut(s)	523
NdeII	GATC	7 cut(s)	78, 90, 261, 277, 536, 609, 914
NlaIII	CATG	4 cut(s)	22, 581, 756, 820
NlaIV	GGNNCC	3 cut(s)	616, 672, 979
NmuCI	GTSAC	2 cut(s)	95, 989
NspI	RCATGY	2 cut(s)	22, 581
NspV	TTCGAA	1 cut(s)	360
PaeI	GCATGC	2 cut(s)	22, 581
PasI	CCCWGGG	1 cut(s)	618
PceI	AGGCCT	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	407
PctI	GAATGC	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	251
PflMI	CCANNNNNTGG	1 cut(s)	109
PfoI	TCCNGGA	1 cut(s)	138
PkrI	GCNGC	6 cut(s)	64, 67, 70, 576, 814, 947
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PshAI	GACNNNNGTC	1 cut(s)	110
Psp6I	CCWGG	5 cut(s)	138, 246, 617, 784, 996
PspEI	GGTNACC	1 cut(s)	176
PspGI	CCWGG	5 cut(s)	138, 246, 617, 784, 996
PspN4I	GGNNCC	3 cut(s)	616, 672, 979
PspPI	GGNCC	3 cut(s)	614, 670, 779
PstI	CTGCAG	2 cut(s)	70, 947
RsaI	GTAC	1 cut(s)	767
RsaNI	GTAC	1 cut(s)	766
SaqAI	TTAA	2 cut(s)	285, 549
SatI	GCNGC	6 cut(s)	63, 66, 69, 575, 813, 946
Sau3AI	GATC	7 cut(s)	78, 90, 261, 277, 536, 609, 914
Sau96I	GGNCC	3 cut(s)	614, 670, 779
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	5 cut(s)	140, 248, 619, 786, 998
SfaNI	GCATC	1 cut(s)	957
SfcI	CTRYAG	2 cut(s)	66, 943
SfuI	TTCGAA	1 cut(s)	360
SinI	GGWCC	3 cut(s)	614, 670, 779
SmlI	CTYRAG	2 cut(s)	284, 830
SmoI	CTYRAG	2 cut(s)	284, 830
SphI	GCATGC	2 cut(s)	22, 581
Sse9I	AATT	8 cut(s)	187, 273, 371, 383, 465, 546, 728, 953
SseBI	AGGCCT	1 cut(s)	168
SsiI	CCGC	2 cut(s)	54, 906
StuI	AGGCCT	1 cut(s)	168
StyD4I	CCNGG	5 cut(s)	138, 246, 617, 784, 996
StyI	CCWWGG	1 cut(s)	816
TaaI	ACNGT	2 cut(s)	88, 894
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	4 cut(s)	360, 800, 913, 951
TaqII	GACCGA	1 cut(s)	602
TasI	AATT	8 cut(s)	187, 273, 371, 383, 465, 546, 728, 953
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	2 cut(s)	285, 549
Tru9I	TTAA	2 cut(s)	285, 549
TscAI	CASTG	4 cut(s)	93, 100, 271, 994
TseFI	GTSAC	2 cut(s)	95, 989
TseI	GCWGC	6 cut(s)	62, 65, 68, 574, 812, 945
Tsp45I	GTSAC	2 cut(s)	95, 989
TspDTI	ATGAA	3 cut(s)	228, 252, 438
TspRI	CASTG	4 cut(s)	93, 100, 271, 994
Van91I	CCANNNNNTGG	1 cut(s)	109
Vha464I	CTTAAG	1 cut(s)	284
VpaK11BI	GGWCC	3 cut(s)	614, 670, 779
XagI	CCTNNNNNAGG	1 cut(s)	789
XapI	RAATTY	2 cut(s)	383, 728
XceI	RCATGY	2 cut(s)	22, 581
ZraI	GACGTC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.