Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0009761

Physical Location & Seq

Genomic Coordinates Reverse (-)

24973123 .. 24975551

Gene Structure 2429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002067

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGCCTTCAACAACATCAGTTCTATCAACCTACACCACATTTGCTGCTGCAGCAATGCTGATCAGGACAGTGATCAGTGAGGTCCAGAATATGGTCGGCCAGTTCATACCTCAAAAACTCCAGGACAAAATCATTGCCACACTTGCAGGCCTATTCGGTAACCTTCCTAATTCTCAAATGACTCTTATCATTGATGAAAACAATGGCCTCTCTATCAATGAAGTTTACCAGGCTTCAGAACTCTACTTAAGCACAAGGATCACTGCCTCAATTGATCAACTTAAGGTTTCCAAGTCCCCACGCCAAAACAACTTCTCTGTTACCATAAACAAAGGCGAGAAGCTAACTGACGAGTTCGAAGGAATACAGTTGAGGTGGGAATTCTGTTGTTCTGAAACGAAACAGGCGAATATGGACTATGAAAGCTATTGCTCATCAACAGAAGTAGTAGAGCAAAAGTCAATTCAGCTCATGCAAAGATCAAAAGCAATTAAAGAGGAAAATAAGGTGGTGAGGCTGCATGCACTTGGAAACTTCAGTGGAGAATGTTCGATCGGTCCCTGGGGTTCGATCGGTCCCAGTGATAGCCAGTTGACACTATTAGGATTGCTCAATTTCATTGATGGTTTATGGTCAAGCTGTGGAGATGAGAGGATAATTGTGTTTACCACCAACTACAAGGACAAGCTAGATCCTGCATTGTTGGGACCACGCCGAATGGATATGCATGTTCACATGTCCTACTGCACACCGTGTGGATTCAAAACCCTTGCTCATAACTACCTTAAAGTAAAAAATCATCATCTCTTCAATGAAATTGAAAAATTCATAAAGGAGGTTGATACGACTCCAGCAGAGATTGCAGAAGAACTCATGAAAAGTGAAGACACCGATGTAGCGCTGGAAGGACTCATTGCATTCCTGAGGAAGAAGAAAGAGATGAACTGCAATGCTGAAGCCAATGCTGAAGCCAATGTTGAAGAAACAATAGAAAACAATGAACTAAAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

338

Amino Acids

37.8

Weight (kDa)

5.07

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	36 - 130	5.6e-24	Domain associated at C-terminal with AAA
AAA_lid_At3g28540	PF25568	249 - 318	4.8e-25	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50930
fragaria_vesca	FvH4_4g24040
malus_domestica	MD13G1112300.v1.1
prunus_persica	Prupe.1G229600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0430751 RchiOBHm_Chr7g0222361
rosa_laevigata	RLG00000002067 RLG00000006952
rosa_roxburghii	Rroxscaffold_3G00237040 Rroxscaffold_5G00372460
rosa_rugosa	Rorug04G0245600 Rorug07G0207700
rosa_samantha	Rh4AG301600 Rh4BG309500 Rh4BG309600 Rh7AG350200 Rh7BG339800 Rh7BG339900 Rh7BG340500
rosa_wichuraiana	Rw4G026210 Rw7G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	91
AclWI	GGATC	2 cut(s)	266, 686
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	2 cut(s)	380, 824
AcuI	CTGAAG	4 cut(s)	219, 520, 975, 987
AdeI	CACNNNGTG	2 cut(s)	753, 755
AfeI	AGCGCT	1 cut(s)	900
AfiI	CCNNNNNNNGG	1 cut(s)	91
AflII	CTTAAG	2 cut(s)	247, 281
AflIII	ACRYGT	1 cut(s)	735
AgsI	TTSAA	5 cut(s)	9, 763, 811, 821, 980
AjnI	CCWGG	3 cut(s)	120, 228, 560
AluBI	AGCT	5 cut(s)	343, 426, 469, 639, 688
AluI	AGCT	5 cut(s)	343, 426, 469, 639, 688
AlwI	GGATC	2 cut(s)	266, 686
Aor51HI	AGCGCT	1 cut(s)	900
AoxI	GGCC	3 cut(s)	97, 148, 205
ApeKI	GCWGC	4 cut(s)	44, 47, 50, 517
ApoI	RAATTY	2 cut(s)	380, 824
AspLEI	GCGC	1 cut(s)	901
AspS9I	GGNCC	4 cut(s)	82, 557, 575, 707
AsuHPI	GGTGA	1 cut(s)	523
AsuII	TTCGAA	1 cut(s)	357
AvaII	GGWCC	4 cut(s)	82, 557, 575, 707
AxyI	CCTNAGG	1 cut(s)	923
BbsI	GAAGAC	1 cut(s)	891
BbvI	GCAGC	4 cut(s)	31, 34, 62, 504
BccI	CCATC	1 cut(s)	617
BciT130I	CCWGG	3 cut(s)	122, 230, 562
BclI	TGATCA	3 cut(s)	60, 72, 274
BfaI	CTAG	1 cut(s)	689
BfmI	CTRYAG	1 cut(s)	48
BfoI	RGCGCY	1 cut(s)	902
BfrI	CTTAAG	2 cut(s)	247, 281
BisI	GCNGC	4 cut(s)	45, 48, 51, 518
BlsI	GCNGC	4 cut(s)	46, 49, 52, 519
Bme1390I	CCNGG	3 cut(s)	122, 230, 562
Bme18I	GGWCC	4 cut(s)	82, 557, 575, 707
BmgT120I	GGNCC	4 cut(s)	82, 557, 575, 707
BmiI	GGNNCC	3 cut(s)	559, 577, 708
BmrFI	CCNGG	3 cut(s)	122, 230, 562
BmrI	ACTGGG	1 cut(s)	573
BmuI	ACTGGG	1 cut(s)	573
BpiI	GAAGAC	1 cut(s)	891
BpmI	CTGGAG	2 cut(s)	104, 834
Bpu14I	TTCGAA	1 cut(s)	357
BsaJI	CCNNGG	2 cut(s)	560, 561
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse1I	ACTGG	3 cut(s)	100, 579, 589
Bse21I	CCTNAGG	1 cut(s)	923
Bse3DI	GCAATG	4 cut(s)	60, 132, 912, 955
BseBI	CCWGG	3 cut(s)	122, 230, 562
BseDI	CCNNGG	2 cut(s)	560, 561
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMI	GCAATG	4 cut(s)	60, 132, 912, 955
BseMII	CTCAG	1 cut(s)	914
BseNI	ACTGG	3 cut(s)	100, 579, 589
BseXI	GCAGC	4 cut(s)	31, 34, 62, 504
BsgI	GTGCAG	1 cut(s)	730
Bsh1285I	CGRYCG	2 cut(s)	555, 573
BshFI	GGCC	3 cut(s)	99, 150, 207
BsiEI	CGRYCG	2 cut(s)	555, 573
BslFI	GGGAC	4 cut(s)	280, 543, 561, 720
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmFI	GGGAC	4 cut(s)	280, 543, 561, 720
BsmI	GAATGC	1 cut(s)	917
BsnI	GGCC	3 cut(s)	99, 150, 207
Bsp119I	TTCGAA	1 cut(s)	357
Bsp143I	GATC	8 cut(s)	60, 72, 258, 274, 479, 552, 570, 691
BspANI	GGCC	3 cut(s)	99, 150, 207
BspCNI	CTCAG	1 cut(s)	915
BspHI	TCATGA	1 cut(s)	873
BspLI	GGNNCC	3 cut(s)	559, 577, 708
BspMAI	CTGCAG	1 cut(s)	52
BspPI	GGATC	2 cut(s)	266, 686
BspT104I	TTCGAA	1 cut(s)	357
BspTI	CTTAAG	2 cut(s)	247, 281
BsrDI	GCAATG	4 cut(s)	60, 132, 912, 955
BsrI	ACTGG	3 cut(s)	100, 579, 589
BssECI	CCNNGG	2 cut(s)	560, 561
BssMI	GATC	8 cut(s)	60, 72, 258, 274, 479, 552, 570, 691
Bst2UI	CCWGG	3 cut(s)	122, 230, 562
Bst4CI	ACNGT	3 cut(s)	70, 369, 753
Bst6I	CTCTTC	1 cut(s)	812
BstAFI	CTTAAG	2 cut(s)	247, 281
BstAPI	GCANNNNNTGC	1 cut(s)	860
BstBI	TTCGAA	1 cut(s)	357
BstC8I	GCNNGC	2 cut(s)	148, 522
BstDEI	CTNAG	1 cut(s)	923
BstEII	GGTNACC	1 cut(s)	158
BstH2I	RGCGCY	1 cut(s)	902
BstHHI	GCGC	1 cut(s)	901
BstKTI	GATC	8 cut(s)	63, 75, 261, 277, 482, 555, 573, 694
BstMBI	GATC	8 cut(s)	60, 72, 258, 274, 479, 552, 570, 691
BstMCI	CGRYCG	2 cut(s)	555, 573
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 143, 860
BstNI	CCWGG	3 cut(s)	122, 230, 562
BstNSI	RCATGY	3 cut(s)	524, 731, 739
BstPI	GGTNACC	1 cut(s)	158
BstSCI	CCNGG	3 cut(s)	120, 228, 560
BstSFI	CTRYAG	1 cut(s)	48
BstV1I	GCAGC	4 cut(s)	31, 34, 62, 504
BstV2I	GAAGAC	1 cut(s)	891
BstX2I	RGATCY	1 cut(s)	691
BstYI	RGATCY	1 cut(s)	691
Bsu36I	CCTNAGG	1 cut(s)	923
BsuRI	GGCC	3 cut(s)	99, 150, 207
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	5 cut(s)	75, 82, 261, 544, 586
Cac8I	GCNNGC	2 cut(s)	148, 522
CciI	TCATGA	1 cut(s)	873
CfoI	GCGC	1 cut(s)	901
Cfr13I	GGNCC	4 cut(s)	82, 557, 575, 707
CviAII	CATG	5 cut(s)	472, 521, 728, 736, 874
DdeI	CTNAG	1 cut(s)	923
DpnI	GATC	8 cut(s)	62, 74, 260, 276, 481, 554, 572, 693
DpnII	GATC	8 cut(s)	60, 72, 258, 274, 479, 552, 570, 691
DraIII	CACNNNGTG	2 cut(s)	753, 755
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	812
EarI	CTCTTC	1 cut(s)	812
Eco147I	AGGCCT	1 cut(s)	150
Eco47I	GGWCC	4 cut(s)	82, 557, 575, 707
Eco47III	AGCGCT	1 cut(s)	900
Eco57I	CTGAAG	4 cut(s)	219, 520, 975, 987
Eco81I	CCTNAGG	1 cut(s)	923
Eco91I	GGTNACC	1 cut(s)	158
EcoO65I	GGTNACC	1 cut(s)	158
EcoRI	GAATTC	1 cut(s)	380
EcoRII	CCWGG	3 cut(s)	120, 228, 560
EcoT22I	ATGCAT	1 cut(s)	729
FaeI	CATG	5 cut(s)	475, 524, 731, 739, 877
FaqI	GGGAC	4 cut(s)	280, 543, 561, 720
FatI	CATG	5 cut(s)	471, 520, 727, 735, 873
FbaI	TGATCA	3 cut(s)	60, 72, 274
Fnu4HI	GCNGC	4 cut(s)	45, 48, 51, 518
Fsp4HI	GCNGC	4 cut(s)	45, 48, 51, 518
FspBI	CTAG	1 cut(s)	689
GlaI	GCGC	1 cut(s)	900
GluI	GCNGC	4 cut(s)	45, 48, 51, 518
GsuI	CTGGAG	2 cut(s)	104, 834
HaeII	RGCGCY	1 cut(s)	902
HaeIII	GGCC	3 cut(s)	99, 150, 207
HhaI	GCGC	1 cut(s)	901
Hin1II	CATG	5 cut(s)	475, 524, 731, 739, 877
Hin6I	GCGC	1 cut(s)	899
HinP1I	GCGC	1 cut(s)	899
HincII	GTYRAC	1 cut(s)	594
HindII	GTYRAC	1 cut(s)	594
HinfI	GANTC	4 cut(s)	181, 759, 847, 909
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	4 cut(s)	226, 594, 666, 733
Hpy188I	TCNGA	2 cut(s)	238, 394
Hpy188III	TCNNGA	4 cut(s)	64, 85, 874, 922
Hpy8I	GTNNAC	4 cut(s)	226, 594, 666, 733
HpyAV	CCTTC	4 cut(s)	15, 173, 353, 899
HpyCH4III	ACNGT	3 cut(s)	70, 369, 753
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 143, 860
HpyF3I	CTNAG	1 cut(s)	923
Hsp92II	CATG	5 cut(s)	475, 524, 731, 739, 877
HspAI	GCGC	1 cut(s)	899
Ksp22I	TGATCA	3 cut(s)	60, 72, 274
Kzo9I	GATC	8 cut(s)	60, 72, 258, 274, 479, 552, 570, 691
Lsp1109I	GCAGC	4 cut(s)	31, 34, 62, 504
MaeI	CTAG	1 cut(s)	689
MaeIII	GTNAC	2 cut(s)	158, 319
MalI	GATC	8 cut(s)	62, 74, 260, 276, 481, 554, 572, 693
MboI	GATC	8 cut(s)	60, 72, 258, 274, 479, 552, 570, 691
MboII	GAAGA	6 cut(s)	799, 878, 896, 940, 943, 992
MfeI	CAATTG	1 cut(s)	270
MflI	RGATCY	1 cut(s)	691
MluCI	AATT	9 cut(s)	169, 270, 380, 462, 489, 613, 657, 816, 824
MlyI	GAGTC	3 cut(s)	175, 841, 903
Mph1103I	ATGCAT	1 cut(s)	729
MseI	TTAA	4 cut(s)	248, 282, 492, 786
MspCI	CTTAAG	2 cut(s)	247, 281
MspR9I	CCNGG	3 cut(s)	122, 230, 562
MunI	CAATTG	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	917
MvaI	CCWGG	3 cut(s)	122, 230, 562
MwoI	GCNNNNNNNGC	3 cut(s)	50, 143, 860
NdeII	GATC	8 cut(s)	60, 72, 258, 274, 479, 552, 570, 691
NlaIII	CATG	5 cut(s)	475, 524, 731, 739, 877
NlaIV	GGNNCC	3 cut(s)	559, 577, 708
NsiI	ATGCAT	1 cut(s)	729
NspI	RCATGY	3 cut(s)	524, 731, 739
NspV	TTCGAA	1 cut(s)	357
PaeI	GCATGC	1 cut(s)	524
PagI	TCATGA	1 cut(s)	873
PasI	CCCWGGG	1 cut(s)	561
PceI	AGGCCT	1 cut(s)	150
PciI	ACATGT	1 cut(s)	735
PcsI	WCGNNNNNNNCGW	1 cut(s)	404
PctI	GAATGC	1 cut(s)	917
PfeI	GAWTC	1 cut(s)	759
PflMI	CCANNNNNTGG	1 cut(s)	91
PfoI	TCCNGGA	1 cut(s)	120
PkrI	GCNGC	4 cut(s)	46, 49, 52, 519
Ple19I	CGATCG	2 cut(s)	555, 573
PleI	GAGTC	3 cut(s)	175, 841, 903
PpsI	GAGTC	3 cut(s)	175, 841, 903
PscI	ACATGT	1 cut(s)	735
Psp6I	CCWGG	3 cut(s)	120, 228, 560
PspEI	GGTNACC	1 cut(s)	158
PspGI	CCWGG	3 cut(s)	120, 228, 560
PspN4I	GGNNCC	3 cut(s)	559, 577, 708
PspPI	GGNCC	4 cut(s)	82, 557, 575, 707
PstI	CTGCAG	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	691
PvuI	CGATCG	2 cut(s)	555, 573
SaqAI	TTAA	4 cut(s)	248, 282, 492, 786
SatI	GCNGC	4 cut(s)	45, 48, 51, 518
Sau3AI	GATC	8 cut(s)	60, 72, 258, 274, 479, 552, 570, 691
Sau96I	GGNCC	4 cut(s)	82, 557, 575, 707
SchI	GAGTC	3 cut(s)	175, 841, 903
ScrFI	CCNGG	3 cut(s)	122, 230, 562
SfcI	CTRYAG	1 cut(s)	48
SfuI	TTCGAA	1 cut(s)	357
SinI	GGWCC	4 cut(s)	82, 557, 575, 707
SmlI	CTYRAG	2 cut(s)	247, 281
SmoI	CTYRAG	2 cut(s)	247, 281
SphI	GCATGC	1 cut(s)	524
Sse9I	AATT	9 cut(s)	169, 270, 380, 462, 489, 613, 657, 816, 824
SseBI	AGGCCT	1 cut(s)	150
SspMI	CTAG	1 cut(s)	689
StuI	AGGCCT	1 cut(s)	150
StyD4I	CCNGG	3 cut(s)	120, 228, 560
TaaI	ACNGT	3 cut(s)	70, 369, 753
TaqI	TCGA	3 cut(s)	357, 551, 569
TaqII	GACCGA	2 cut(s)	545, 563
TasI	AATT	9 cut(s)	169, 270, 380, 462, 489, 613, 657, 816, 824
TfiI	GAWTC	1 cut(s)	759
Tru1I	TTAA	4 cut(s)	248, 282, 492, 786
Tru9I	TTAA	4 cut(s)	248, 282, 492, 786
TscAI	CASTG	5 cut(s)	75, 82, 268, 544, 586
TseI	GCWGC	4 cut(s)	44, 47, 50, 517
TspRI	CASTG	5 cut(s)	75, 82, 268, 544, 586
Van91I	CCANNNNNTGG	1 cut(s)	91
Vha464I	CTTAAG	2 cut(s)	247, 281
VpaK11BI	GGWCC	4 cut(s)	82, 557, 575, 707
XapI	RAATTY	2 cut(s)	380, 824
XceI	RCATGY	3 cut(s)	524, 731, 739
XspI	CTAG	1 cut(s)	689
Zsp2I	ATGCAT	1 cut(s)	729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.