Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0009761

Physical Location & Seq

Genomic Coordinates Reverse (-)

52370249 .. 52371360

Gene Structure 1112 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G026210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGCAGTTGAGGTGGGAATTCTGTTGTTTTGAAACGAAACAGGCGAATTTGGACCATGAAAGCTATTGCTCATCAACAGAGGTAGTAGAGCATAAGTCAATTCAGCTCAGTTTCCACAAGCAATACAGAGAAAAGGTATTAGAAACTTACCTGCCATATGTAGTGCAAAGATCAAAAGCAATTAAAGAGGAAAATAAGGTGGTGAAGCTGCATGCACTTGGAAACTTTAGTGGAGAATGTTCGATCGGTCCCTGGGGTTCAGTCATCTTTGAACATCCATCAACTTTTGACACATTGGCAATGGATCCAATGCTGTTTGTGAGGCGAAAGGAATTTTATGGCAGAGTAGGCAAGGCATGGAAACGAGGGTACTTGTTGTATGGTCCTCCTGGCACTGGAAAGTCGAGCTTGATTGCAGCCATGGCTAATTACCTCAAGTTTGATATCTATGATTTGGAGCTTACATATTTACACAGCAACTCTGAGCTTAGGAGACTGTTAGTCTCCACCACAAATCGATCAATCATAGTGATTGAGGATATTGACTGCAGCATTGAATTGAAGGACAGACAAGTTAGAGGAACCAACGCCAGTGACAGCCAGTTGACACTATCCGGATTGCTTAATTTCATTGATGGTTTATGGTCGAGCTGTGGAGATGAGAGGATAATCGTACCAGGCCGGATGGATATGCATGTTCACATGTCCTACTGCACACCATGTGGATTCAAAACCCTTGCTCATAACTACTTTAAAGTAAAAACTCATCATCTCTTCAATGAAATTGAAAAATTCATAAAGGAGGTTGTTACAACTCCAGCAGAGATTGCAGAAGAACTCATGAAAAGTGAAGACACCGATATAGCGCTGGGAGGACTCATTGCATTCCTGAAGAAGAAGAAAGAGATGAACTGCAGTGCTGAAGCCAATGTTGAAAAAAACAATAGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

317

Amino Acids

36.29

Weight (kDa)

7.15

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	124 - 217	7.6e-12	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	238 - 306	1.3e-23	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50930
fragaria_vesca	FvH4_4g24040
malus_domestica	MD13G1112300.v1.1
prunus_persica	Prupe.1G229600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0430751 RchiOBHm_Chr7g0222361
rosa_laevigata	RLG00000002067 RLG00000006952
rosa_roxburghii	Rroxscaffold_3G00237040 Rroxscaffold_5G00372460
rosa_rugosa	Rorug04G0245600 Rorug07G0207700
rosa_samantha	Rh4AG301600 Rh4BG309500 Rh4BG309600 Rh7AG350200 Rh7BG339800 Rh7BG339900 Rh7BG340500
rosa_wichuraiana	Rw4G026210 Rw7G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	159
AccIII	TCCGGA	1 cut(s)	614
AclWI	GGATC	2 cut(s)	299, 312
AcsI	RAATTY	4 cut(s)	17, 46, 332, 791
AcuI	CTGAAG	2 cut(s)	911, 942
AdeI	CACNNNGTG	1 cut(s)	722
AfaI	GTAC	2 cut(s)	371, 675
AfeI	AGCGCT	1 cut(s)	867
AfiI	CCNNNNNNNGG	1 cut(s)	395
AflIII	ACRYGT	1 cut(s)	702
AgsI	TTSAA	8 cut(s)	32, 272, 557, 562, 730, 778, 788, 935
AhdI	GACNNNNNGTC	1 cut(s)	500
AjnI	CCWGG	3 cut(s)	251, 388, 676
AluBI	AGCT	7 cut(s)	63, 106, 208, 408, 460, 487, 651
AluI	AGCT	7 cut(s)	63, 106, 208, 408, 460, 487, 651
Alw26I	GTCTC	2 cut(s)	487, 508
AlwI	GGATC	2 cut(s)	299, 312
Aor13HI	TCCGGA	1 cut(s)	614
Aor51HI	AGCGCT	1 cut(s)	867
AoxI	GGCC	1 cut(s)	679
ApeKI	GCWGC	3 cut(s)	208, 416, 549
ApoI	RAATTY	4 cut(s)	17, 46, 332, 791
AspLEI	GCGC	1 cut(s)	868
AspS9I	GGNCC	3 cut(s)	52, 248, 383
AsuHPI	GGTGA	1 cut(s)	214
AvaII	GGWCC	3 cut(s)	52, 248, 383
BamHI	GGATCC	1 cut(s)	304
BbsI	GAAGAC	1 cut(s)	858
BbvI	GCAGC	3 cut(s)	195, 428, 561
BccI	CCATC	3 cut(s)	286, 629, 679
BciT130I	CCWGG	3 cut(s)	253, 390, 678
BcoDI	GTCTC	2 cut(s)	487, 508
BfmI	CTRYAG	2 cut(s)	547, 913
BfoI	RGCGCY	1 cut(s)	869
BfuAI	ACCTGC	1 cut(s)	159
BisI	GCNGC	3 cut(s)	209, 417, 550
BlsI	GCNGC	3 cut(s)	210, 418, 551
Bme1390I	CCNGG	3 cut(s)	253, 390, 678
Bme18I	GGWCC	3 cut(s)	52, 248, 383
BmeRI	GACNNNNNGTC	1 cut(s)	500
BmgT120I	GGNCC	3 cut(s)	52, 248, 383
BmiI	GGNNCC	3 cut(s)	250, 306, 583
BmrFI	CCNGG	3 cut(s)	253, 390, 678
BpiI	GAAGAC	1 cut(s)	858
BpmI	CTGGAG	1 cut(s)	801
Bpu10I	CCTNAGC	1 cut(s)	488
BpuEI	CTTGAG	1 cut(s)	419
Bsa29I	ATCGAT	1 cut(s)	517
BsaJI	CCNNGG	3 cut(s)	251, 252, 420
BsaWI	WCCGGW	1 cut(s)	614
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
Bse1I	ACTGG	3 cut(s)	400, 591, 601
Bse3DI	GCAATG	2 cut(s)	306, 879
BseAI	TCCGGA	1 cut(s)	614
BseBI	CCWGG	3 cut(s)	253, 390, 678
BseCI	ATCGAT	1 cut(s)	517
BseDI	CCNNGG	3 cut(s)	251, 252, 420
BseGI	GGATG	2 cut(s)	274, 690
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseMI	GCAATG	2 cut(s)	306, 879
BseMII	CTCAG	2 cut(s)	121, 474
BseNI	ACTGG	3 cut(s)	400, 591, 601
BseXI	GCAGC	3 cut(s)	195, 428, 561
BseYI	CCCAGC	1 cut(s)	868
BsgI	GTGCAG	1 cut(s)	697
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	681
BshVI	ATCGAT	1 cut(s)	517
BsiEI	CGRYCG	1 cut(s)	246
BsiSI	CCGG	2 cut(s)	615, 682
BslFI	GGGAC	1 cut(s)	234
BslI	CCNNNNNNNGG	1 cut(s)	395
BsmAI	GTCTC	2 cut(s)	487, 508
BsmFI	GGGAC	1 cut(s)	234
BsmI	GAATGC	1 cut(s)	884
BsnI	GGCC	1 cut(s)	681
Bsp13I	TCCGGA	1 cut(s)	614
Bsp143I	GATC	4 cut(s)	170, 243, 304, 518
Bsp19I	CCATGG	1 cut(s)	420
BspANI	GGCC	1 cut(s)	681
BspCNI	CTCAG	2 cut(s)	120, 475
BspDI	ATCGAT	1 cut(s)	517
BspEI	TCCGGA	1 cut(s)	614
BspHI	TCATGA	1 cut(s)	840
BspLI	GGNNCC	3 cut(s)	250, 306, 583
BspMAI	CTGCAG	2 cut(s)	551, 917
BspMI	ACCTGC	1 cut(s)	159
BspPI	GGATC	2 cut(s)	299, 312
BsrDI	GCAATG	2 cut(s)	306, 879
BsrI	ACTGG	3 cut(s)	400, 591, 601
BssECI	CCNNGG	3 cut(s)	251, 252, 420
BssMI	GATC	4 cut(s)	170, 243, 304, 518
BssT1I	CCWWGG	1 cut(s)	420
Bst2UI	CCWGG	3 cut(s)	253, 390, 678
Bst4CI	ACNGT	1 cut(s)	498
Bst6I	CTCTTC	1 cut(s)	779
BstAPI	GCANNNNNTGC	1 cut(s)	827
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	3 cut(s)	107, 483, 488
BstDSI	CCRYGG	1 cut(s)	420
BstF5I	GGATG	2 cut(s)	274, 690
BstH2I	RGCGCY	1 cut(s)	869
BstHHI	GCGC	1 cut(s)	868
BstKTI	GATC	4 cut(s)	173, 246, 307, 521
BstMAI	GTCTC	2 cut(s)	487, 508
BstMBI	GATC	4 cut(s)	170, 243, 304, 518
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	3 cut(s)	348, 422, 827
BstNI	CCWGG	3 cut(s)	253, 390, 678
BstNSI	RCATGY	3 cut(s)	215, 698, 706
BstSCI	CCNGG	3 cut(s)	251, 388, 676
BstSFI	CTRYAG	2 cut(s)	547, 913
BstV1I	GCAGC	3 cut(s)	195, 428, 561
BstV2I	GAAGAC	1 cut(s)	858
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
Bsu15I	ATCGAT	1 cut(s)	517
BsuRI	GGCC	1 cut(s)	681
BsuTUI	ATCGAT	1 cut(s)	517
BtgI	CCRYGG	1 cut(s)	420
BtsCI	GGATG	2 cut(s)	274, 690
BtsI	GCAGTG	1 cut(s)	922
BtsIMutI	CAGTG	3 cut(s)	393, 598, 922
BveI	ACCTGC	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	213
CciI	TCATGA	1 cut(s)	840
CfoI	GCGC	1 cut(s)	868
Cfr13I	GGNCC	3 cut(s)	52, 248, 383
ClaI	ATCGAT	1 cut(s)	517
Csp6I	GTAC	2 cut(s)	370, 674
CviAII	CATG	8 cut(s)	56, 212, 357, 421, 695, 703, 720, 841
CviQI	GTAC	2 cut(s)	370, 674
DdeI	CTNAG	3 cut(s)	107, 483, 488
DpnI	GATC	4 cut(s)	172, 245, 306, 520
DpnII	GATC	4 cut(s)	170, 243, 304, 518
DraI	TTTAAA	1 cut(s)	754
DraIII	CACNNNGTG	1 cut(s)	722
DriI	GACNNNNNGTC	1 cut(s)	500
Eam1104I	CTCTTC	1 cut(s)	779
Eam1105I	GACNNNNNGTC	1 cut(s)	500
EarI	CTCTTC	1 cut(s)	779
Eco130I	CCWWGG	1 cut(s)	420
Eco32I	GATATC	1 cut(s)	445
Eco47I	GGWCC	3 cut(s)	52, 248, 383
Eco47III	AGCGCT	1 cut(s)	867
Eco57I	CTGAAG	2 cut(s)	911, 942
EcoRI	GAATTC	1 cut(s)	17
EcoRII	CCWGG	3 cut(s)	251, 388, 676
EcoRV	GATATC	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	420
EcoT22I	ATGCAT	1 cut(s)	696
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	8 cut(s)	59, 215, 360, 424, 698, 706, 723, 844
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FaqI	GGGAC	1 cut(s)	234
FatI	CATG	8 cut(s)	55, 211, 356, 420, 694, 702, 719, 840
FauNDI	CATATG	1 cut(s)	157
Fnu4HI	GCNGC	3 cut(s)	209, 417, 550
FokI	GGATG	2 cut(s)	261, 697
Fsp4HI	GCNGC	3 cut(s)	209, 417, 550
GlaI	GCGC	1 cut(s)	867
GluI	GCNGC	3 cut(s)	209, 417, 550
GsaI	CCCAGC	1 cut(s)	872
GsuI	CTGGAG	1 cut(s)	801
HaeII	RGCGCY	1 cut(s)	869
HaeIII	GGCC	1 cut(s)	681
HapII	CCGG	2 cut(s)	615, 682
HhaI	GCGC	1 cut(s)	868
Hin1II	CATG	8 cut(s)	59, 215, 360, 424, 698, 706, 723, 844
Hin6I	GCGC	1 cut(s)	866
HinP1I	GCGC	1 cut(s)	866
HincII	GTYRAC	1 cut(s)	606
HindII	GTYRAC	1 cut(s)	606
HinfI	GANTC	2 cut(s)	726, 876
HpaII	CCGG	2 cut(s)	615, 682
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	2 cut(s)	606, 700
Hpy188I	TCNGA	1 cut(s)	484
Hpy188III	TCNNGA	3 cut(s)	615, 841, 889
Hpy8I	GTNNAC	2 cut(s)	606, 700
HpyAV	CCTTC	1 cut(s)	556
HpyCH4III	ACNGT	1 cut(s)	498
HpyF10VI	GCNNNNNNNGC	3 cut(s)	348, 422, 827
HpyF3I	CTNAG	3 cut(s)	107, 483, 488
Hsp92II	CATG	8 cut(s)	59, 215, 360, 424, 698, 706, 723, 844
HspAI	GCGC	1 cut(s)	866
Kpn2I	TCCGGA	1 cut(s)	614
Kzo9I	GATC	4 cut(s)	170, 243, 304, 518
LmnI	GCTCC	1 cut(s)	457
Lsp1109I	GCAGC	3 cut(s)	195, 428, 561
MaeIII	GTNAC	2 cut(s)	593, 808
MalI	GATC	4 cut(s)	172, 245, 306, 520
MboI	GATC	4 cut(s)	170, 243, 304, 518
MboII	GAAGA	6 cut(s)	766, 845, 863, 904, 907, 910
MflI	RGATCY	1 cut(s)	304
MlyI	GAGTC	1 cut(s)	870
Mph1103I	ATGCAT	1 cut(s)	696
MroI	TCCGGA	1 cut(s)	614
MseI	TTAA	3 cut(s)	183, 624, 753
MspI	CCGG	2 cut(s)	615, 682
MspR9I	CCNGG	3 cut(s)	253, 390, 678
Mva1269I	GAATGC	1 cut(s)	884
MvaI	CCWGG	3 cut(s)	253, 390, 678
MwoI	GCNNNNNNNGC	3 cut(s)	348, 422, 827
NcoI	CCATGG	1 cut(s)	420
NdeI	CATATG	1 cut(s)	157
NdeII	GATC	4 cut(s)	170, 243, 304, 518
NlaIII	CATG	8 cut(s)	59, 215, 360, 424, 698, 706, 723, 844
NlaIV	GGNNCC	3 cut(s)	250, 306, 583
NmuCI	GTSAC	1 cut(s)	593
NsiI	ATGCAT	1 cut(s)	696
NspI	RCATGY	3 cut(s)	215, 698, 706
PaeI	GCATGC	1 cut(s)	215
PagI	TCATGA	1 cut(s)	840
PasI	CCCWGGG	1 cut(s)	252
PciI	ACATGT	1 cut(s)	702
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PctI	GAATGC	1 cut(s)	884
PfeI	GAWTC	1 cut(s)	726
PkrI	GCNGC	3 cut(s)	210, 418, 551
Ple19I	CGATCG	1 cut(s)	246
PleI	GAGTC	1 cut(s)	870
PpsI	GAGTC	1 cut(s)	870
PscI	ACATGT	1 cut(s)	702
Psp6I	CCWGG	3 cut(s)	251, 388, 676
PspFI	CCCAGC	1 cut(s)	868
PspGI	CCWGG	3 cut(s)	251, 388, 676
PspN4I	GGNNCC	3 cut(s)	250, 306, 583
PspPI	GGNCC	3 cut(s)	52, 248, 383
PstI	CTGCAG	2 cut(s)	551, 917
PsuI	RGATCY	1 cut(s)	304
PvuI	CGATCG	1 cut(s)	246
RsaI	GTAC	2 cut(s)	371, 675
RsaNI	GTAC	2 cut(s)	370, 674
SaqAI	TTAA	3 cut(s)	183, 624, 753
SatI	GCNGC	3 cut(s)	209, 417, 550
Sau3AI	GATC	4 cut(s)	170, 243, 304, 518
Sau96I	GGNCC	3 cut(s)	52, 248, 383
SchI	GAGTC	1 cut(s)	870
ScrFI	CCNGG	3 cut(s)	253, 390, 678
SfcI	CTRYAG	2 cut(s)	547, 913
SinI	GGWCC	3 cut(s)	52, 248, 383
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
SphI	GCATGC	1 cut(s)	215
StyD4I	CCNGG	3 cut(s)	251, 388, 676
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	1 cut(s)	498
TaqI	TCGA	4 cut(s)	242, 404, 517, 647
TaqII	GACCGA	1 cut(s)	236
TfiI	GAWTC	1 cut(s)	726
Tru1I	TTAA	3 cut(s)	183, 624, 753
Tru9I	TTAA	3 cut(s)	183, 624, 753
TscAI	CASTG	3 cut(s)	400, 598, 922
TseFI	GTSAC	1 cut(s)	593
TseI	GCWGC	3 cut(s)	208, 416, 549
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	6 cut(s)	72, 619, 784, 795, 857, 923
TspRI	CASTG	3 cut(s)	400, 598, 922
VpaK11BI	GGWCC	3 cut(s)	52, 248, 383
XapI	RAATTY	4 cut(s)	17, 46, 332, 791
XceI	RCATGY	3 cut(s)	215, 698, 706
Zsp2I	ATGCAT	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.