Rh4AG301600

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
61448752 .. 61450222
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG301600.1

Sequence Viewer

Length: 1152 bp
ATGTTTTCTCTAACAAGCATGCCTTCAACAACATCAGTTCTATCAACCTACACCGCATTTGCTGCTGCAGCAATGCTGATCAGGACAGTGATCAGTGACGTCCAGACTATGGTCGGCCAGTTGATACCTCAAAAACTCCAGGACAAAATCATTGCCACACTTGCAGGCCTATTCGGTAACCTTCCTAATTCTCAAATGACTCTTATCATTGATGAAAGCAATGGTCTCTCTATCAATGAAGTTTACCAGGATTCTTCAAGGATCACTGCCTCAATTGATCAACTTAAGGTTTCCAAGTCCCCACGCCAAAACAACTTCTCTGTTACCATAAACAAAGGCGAGAAGCTAACTGACGAGTTCGAAGGAATGCAATTGAGGTGGGAATTCTGTTGTTTTGAAACGAAACAGGCGAATATGGACTATGAAAGCTATTGCTCATCAACAGAGGTAGTAGAGCATAAGTCAATTCAGCTCAGTTTCCACAAGCAATACAGAGAAAAGGTATTAGAAACTTACCTGCCATATGTAGTGCAAAGATCAAAAGCAATTAAAGAGGAAAACAAGGTGGTGAGGCTGCATGCACTTGGAAACTTTGGTGGAGAATGTTTGATCGGTCCCTGGGGTTCAGTCATCTTTGAACATCCATCAACTTTTGACACATTGGCAATGGACCCAATGCTGAAGAACGAGTTGATTGCTGACTTGGACAGGTTTGTGAAGCGAAAGGAATTTTATGGCAGAGTAGGCAAGGCATGGAAACGAGGGTACTTGTTGTATGGTCCTCCTGGCACAGGAAAGTCGAGCTTGATTGCAGCCATGGCTAATCACCTCAAGTTTGATATCTATGATTTGGAGCTTACATATTTACACAGCAACTCTGAGCTTAGGAGACTGTTAGTCTCCACCGCAAATCGATCAATCATAGTGATTGAGGATATTGACTGCAGCATCGAATTGAATGACAGACAAGTTAGAGGAACCAACCCCAGTGACAGCCAGTTGACACTATCCCCGGCCGGATTGCTCAATTTCATTGATGGTTTATGGTCAAGCTGTGGAGATGAGAGAAGCATTGTTGAGACCAGGCCGAATGGATATGCATGTTCACATGTCCTACTGCACACCATGTGGATTCAAAACCCTTGCTCATAA

Protein Analysis

383

Amino Acids

43.06

Weight (kDa)

5.95

Isoelectric Point (pI)

37.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 42 - 131 4.3e-16 Domain associated at C-terminal with AAA
AAA PF00004 256 - 325 7e-10 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 102
Acc36I ACCTGC 1 cut(s) 525
AccB7I CCANNNNNTGG 1 cut(s) 109
AciI CCGC 2 cut(s) 54, 906
AclWI GGATC 1 cut(s) 269
AcoI YGGCCR 2 cut(s) 115, 1014
AcsI RAATTY 2 cut(s) 383, 728
AcuI CTGAAG 1 cut(s) 701
AcyI GRCGYC 1 cut(s) 99
AdeI CACNNNGTG 1 cut(s) 1128
AfaI GTAC 1 cut(s) 767
AfiI CCNNNNNNNGG 2 cut(s) 109, 791
AflII CTTAAG 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 1108
AgsI TTSAA 6 cut(s) 27, 258, 398, 638, 958, 1136
AhdI GACNNNNNGTC 1 cut(s) 896
AjnI CCWGG 5 cut(s) 138, 246, 617, 784, 1082
AluBI AGCT 7 cut(s) 346, 429, 472, 804, 856, 883, 1053
AluI AGCT 7 cut(s) 346, 429, 472, 804, 856, 883, 1053
Alw26I GTCTC 4 cut(s) 230, 883, 904, 1073
AlwI GGATC 1 cut(s) 269
AoxI GGCC 4 cut(s) 115, 166, 1014, 1085
ApeKI GCWGC 6 cut(s) 62, 65, 68, 574, 812, 945
ApoI RAATTY 2 cut(s) 383, 728
AspS9I GGNCC 3 cut(s) 614, 670, 779
AsuC2I CCSGG 1 cut(s) 1013
AsuHPI GGTGA 2 cut(s) 580, 818
AsuII TTCGAA 1 cut(s) 360
AvaII GGWCC 3 cut(s) 614, 670, 779
BbvI GCAGC 6 cut(s) 49, 52, 80, 561, 824, 957
BccI CCATC 2 cut(s) 652, 1031
BcgI CGANNNNNNTGC 2 cut(s) 677, 711
BciT130I CCWGG 5 cut(s) 140, 248, 619, 786, 1084
BclI TGATCA 3 cut(s) 78, 90, 277
BcnI CCSGG 1 cut(s) 1013
BcoDI GTCTC 4 cut(s) 230, 883, 904, 1073
BfmI CTRYAG 2 cut(s) 66, 943
BfrI CTTAAG 1 cut(s) 284
BfuAI ACCTGC 1 cut(s) 525
BisI GCNGC 6 cut(s) 63, 66, 69, 575, 813, 946
BlsI GCNGC 6 cut(s) 64, 67, 70, 576, 814, 947
Bme1390I CCNGG 6 cut(s) 140, 248, 619, 786, 1013, 1084
Bme18I GGWCC 3 cut(s) 614, 670, 779
BmeRI GACNNNNNGTC 1 cut(s) 896
BmgT120I GGNCC 3 cut(s) 614, 670, 779
BmiI GGNNCC 3 cut(s) 616, 672, 979
BmrFI CCNGG 6 cut(s) 140, 248, 619, 786, 1013, 1084
BmrI ACTGGG 1 cut(s) 981
BmsI GCATC 1 cut(s) 957
BmuI ACTGGG 1 cut(s) 981
BoxI GACNNNNGTC 1 cut(s) 110
BpmI CTGGAG 1 cut(s) 122
Bpu10I CCTNAGC 1 cut(s) 884
Bpu14I TTCGAA 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 815
BpuMI CCSGG 1 cut(s) 1013
Bsa29I ATCGAT 1 cut(s) 913
BsaHI GRCGYC 1 cut(s) 99
BsaI GGTCTC 2 cut(s) 230, 1073
BsaJI CCNNGG 4 cut(s) 617, 618, 816, 1011
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 791
Bse1I ACTGG 3 cut(s) 118, 987, 997
Bse3DI GCAATG 4 cut(s) 78, 150, 226, 672
BseBI CCWGG 5 cut(s) 140, 248, 619, 786, 1084
BseCI ATCGAT 1 cut(s) 913
BseDI CCNNGG 4 cut(s) 617, 618, 816, 1011
BseGI GGATG 1 cut(s) 640
BseLI CCNNNNNNNGG 2 cut(s) 109, 791
BseMI GCAATG 4 cut(s) 78, 150, 226, 672
BseMII CTCAG 2 cut(s) 487, 870
BseNI ACTGG 3 cut(s) 118, 987, 997
BseX3I CGGCCG 1 cut(s) 1014
BseXI GCAGC 6 cut(s) 49, 52, 80, 561, 824, 957
BsgI GTGCAG 1 cut(s) 1103
Bsh1285I CGRYCG 1 cut(s) 1017
BshFI GGCC 4 cut(s) 117, 168, 1016, 1087
BshVI ATCGAT 1 cut(s) 913
BsiEI CGRYCG 1 cut(s) 1017
BsiSI CCGG 2 cut(s) 1013, 1017
BslFI GGGAC 2 cut(s) 283, 600
BslI CCNNNNNNNGG 2 cut(s) 109, 791
BsmAI GTCTC 4 cut(s) 230, 883, 904, 1073
BsmFI GGGAC 2 cut(s) 283, 600
BsmI GAATGC 1 cut(s) 372
BsnI GGCC 4 cut(s) 117, 168, 1016, 1087
Bso31I GGTCTC 2 cut(s) 230, 1073
Bsp119I TTCGAA 1 cut(s) 360
Bsp143I GATC 7 cut(s) 78, 90, 261, 277, 536, 609, 914
Bsp19I CCATGG 1 cut(s) 816
BspACI CCGC 2 cut(s) 54, 906
BspANI GGCC 4 cut(s) 117, 168, 1016, 1087
BspCNI CTCAG 2 cut(s) 486, 871
BspDI ATCGAT 1 cut(s) 913
BspLI GGNNCC 3 cut(s) 616, 672, 979
BspMAI CTGCAG 2 cut(s) 70, 947
BspMI ACCTGC 1 cut(s) 525
BspPI GGATC 1 cut(s) 269
BspT104I TTCGAA 1 cut(s) 360
BspTI CTTAAG 1 cut(s) 284
BspTNI GGTCTC 2 cut(s) 230, 1073
BsrDI GCAATG 4 cut(s) 78, 150, 226, 672
BsrI ACTGG 3 cut(s) 118, 987, 997
BssECI CCNNGG 4 cut(s) 617, 618, 816, 1011
BssMI GATC 7 cut(s) 78, 90, 261, 277, 536, 609, 914
BssNI GRCGYC 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 816
Bst2UI CCWGG 5 cut(s) 140, 248, 619, 786, 1084
Bst4CI ACNGT 2 cut(s) 88, 894
BstACI GRCGYC 1 cut(s) 99
BstAFI CTTAAG 1 cut(s) 284
BstAPI GCANNNNNTGC 1 cut(s) 62
BstBI TTCGAA 1 cut(s) 360
BstC8I GCNNGC 3 cut(s) 20, 166, 579
BstDEI CTNAG 3 cut(s) 473, 879, 884
BstDSI CCRYGG 1 cut(s) 816
BstEII GGTNACC 1 cut(s) 176
BstENI CCTNNNNNAGG 1 cut(s) 789
BstF5I GGATG 1 cut(s) 640
BstKTI GATC 7 cut(s) 81, 93, 264, 280, 539, 612, 917
BstMAI GTCTC 4 cut(s) 230, 883, 904, 1073
BstMBI GATC 7 cut(s) 78, 90, 261, 277, 536, 609, 914
BstMCI CGRYCG 1 cut(s) 1017
BstMWI GCNNNNNNNGC 5 cut(s) 62, 68, 161, 744, 818
BstNI CCWGG 5 cut(s) 140, 248, 619, 786, 1084
BstNSI RCATGY 4 cut(s) 22, 581, 1104, 1112
BstPAI GACNNNNGTC 1 cut(s) 110
BstPI GGTNACC 1 cut(s) 176
BstSCI CCNGG 6 cut(s) 138, 246, 617, 784, 1011, 1082
BstSFI CTRYAG 2 cut(s) 66, 943
BstV1I GCAGC 6 cut(s) 49, 52, 80, 561, 824, 957
BstZI CGGCCG 1 cut(s) 1014
Bsu15I ATCGAT 1 cut(s) 913
BsuRI GGCC 4 cut(s) 117, 168, 1016, 1087
BsuTUI ATCGAT 1 cut(s) 913
BtgI CCRYGG 1 cut(s) 816
BtsCI GGATG 1 cut(s) 640
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 4 cut(s) 93, 100, 264, 994
BveI ACCTGC 1 cut(s) 525
Cac8I GCNNGC 3 cut(s) 20, 166, 579
Cfr13I GGNCC 3 cut(s) 614, 670, 779
ClaI ATCGAT 1 cut(s) 913
Csp6I GTAC 1 cut(s) 766
CspCI CAANNNNNGTGG 2 cut(s) 359, 394
CviAII CATG 7 cut(s) 19, 578, 753, 817, 1101, 1109, 1126
CviQI GTAC 1 cut(s) 766
DdeI CTNAG 3 cut(s) 473, 879, 884
DpnI GATC 7 cut(s) 80, 92, 263, 279, 538, 611, 916
DpnII GATC 7 cut(s) 78, 90, 261, 277, 536, 609, 914
DraIII CACNNNGTG 1 cut(s) 1128
DriI GACNNNNNGTC 1 cut(s) 896
EaeI YGGCCR 2 cut(s) 115, 1014
EagI CGGCCG 1 cut(s) 1014
Eam1105I GACNNNNNGTC 1 cut(s) 896
EclXI CGGCCG 1 cut(s) 1014
Eco130I CCWWGG 1 cut(s) 816
Eco147I AGGCCT 1 cut(s) 168
Eco31I GGTCTC 2 cut(s) 230, 1073
Eco32I GATATC 1 cut(s) 841
Eco47I GGWCC 3 cut(s) 614, 670, 779
Eco52I CGGCCG 1 cut(s) 1014
Eco57I CTGAAG 1 cut(s) 701
Eco91I GGTNACC 1 cut(s) 176
EcoNI CCTNNNNNAGG 1 cut(s) 789
EcoO65I GGTNACC 1 cut(s) 176
EcoRI GAATTC 1 cut(s) 383
EcoRII CCWGG 5 cut(s) 138, 246, 617, 784, 1082
EcoRV GATATC 1 cut(s) 841
EcoT14I CCWWGG 1 cut(s) 816
EcoT22I ATGCAT 1 cut(s) 1102
ErhI CCWWGG 1 cut(s) 816
FaeI CATG 7 cut(s) 22, 581, 756, 820, 1104, 1112, 1129
FalI AAGNNNNNCTT 4 cut(s) 7, 39, 788, 820
FaqI GGGAC 2 cut(s) 283, 600
FatI CATG 7 cut(s) 18, 577, 752, 816, 1100, 1108, 1125
FauNDI CATATG 1 cut(s) 523
FbaI TGATCA 3 cut(s) 78, 90, 277
Fnu4HI GCNGC 6 cut(s) 63, 66, 69, 575, 813, 946
FokI GGATG 1 cut(s) 627
Fsp4HI GCNGC 6 cut(s) 63, 66, 69, 575, 813, 946
GluI GCNGC 6 cut(s) 63, 66, 69, 575, 813, 946
GsuI CTGGAG 1 cut(s) 122
HaeIII GGCC 4 cut(s) 117, 168, 1016, 1087
HapII CCGG 2 cut(s) 1013, 1017
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 7 cut(s) 22, 581, 756, 820, 1104, 1112, 1129
HincII GTYRAC 1 cut(s) 1002
HindII GTYRAC 1 cut(s) 1002
HinfI GANTC 3 cut(s) 199, 251, 1132
HpaII CCGG 2 cut(s) 1013, 1017
HphI GGTGA 2 cut(s) 580, 818
Hpy166II GTNNAC 3 cut(s) 244, 1002, 1106
Hpy188I TCNGA 1 cut(s) 880
Hpy188III TCNNGA 2 cut(s) 82, 103
Hpy8I GTNNAC 3 cut(s) 244, 1002, 1106
HpyAV CCTTC 3 cut(s) 33, 191, 356
HpyCH4III ACNGT 2 cut(s) 88, 894
HpyCH4IV ACGT 1 cut(s) 99
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 68, 161, 744, 818
HpyF3I CTNAG 3 cut(s) 473, 879, 884
HpySE526I ACGT 1 cut(s) 99
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 7 cut(s) 22, 581, 756, 820, 1104, 1112, 1129
Ksp22I TGATCA 3 cut(s) 78, 90, 277
Kzo9I GATC 7 cut(s) 78, 90, 261, 277, 536, 609, 914
LmnI GCTCC 1 cut(s) 853
Lsp1109I GCAGC 6 cut(s) 49, 52, 80, 561, 824, 957
LweI GCATC 1 cut(s) 957
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 4 cut(s) 95, 176, 322, 989
MalI GATC 7 cut(s) 80, 92, 263, 279, 538, 611, 916
MboI GATC 7 cut(s) 78, 90, 261, 277, 536, 609, 914
MboII GAAGA 2 cut(s) 246, 694
MfeI CAATTG 2 cut(s) 273, 371
MluCI AATT 9 cut(s) 187, 273, 371, 383, 465, 546, 728, 953, 1027
MlyI GAGTC 1 cut(s) 193
Mph1103I ATGCAT 1 cut(s) 1102
MseI TTAA 2 cut(s) 285, 549
MspCI CTTAAG 1 cut(s) 284
MspI CCGG 2 cut(s) 1013, 1017
MspR9I CCNGG 6 cut(s) 140, 248, 619, 786, 1013, 1084
MunI CAATTG 2 cut(s) 273, 371
Mva1269I GAATGC 1 cut(s) 372
MvaI CCWGG 5 cut(s) 140, 248, 619, 786, 1084
MwoI GCNNNNNNNGC 5 cut(s) 62, 68, 161, 744, 818
NciI CCSGG 1 cut(s) 1013
NcoI CCATGG 1 cut(s) 816
NdeI CATATG 1 cut(s) 523
NdeII GATC 7 cut(s) 78, 90, 261, 277, 536, 609, 914
NlaIII CATG 7 cut(s) 22, 581, 756, 820, 1104, 1112, 1129
NlaIV GGNNCC 3 cut(s) 616, 672, 979
NmuCI GTSAC 2 cut(s) 95, 989
NsiI ATGCAT 1 cut(s) 1102
NspI RCATGY 4 cut(s) 22, 581, 1104, 1112
NspV TTCGAA 1 cut(s) 360
PaeI GCATGC 2 cut(s) 22, 581
PasI CCCWGGG 1 cut(s) 618
PceI AGGCCT 1 cut(s) 168
PciI ACATGT 1 cut(s) 1108
PcsI WCGNNNNNNNCGW 1 cut(s) 407
PctI GAATGC 1 cut(s) 372
PfeI GAWTC 2 cut(s) 251, 1132
PflMI CCANNNNNTGG 1 cut(s) 109
PfoI TCCNGGA 1 cut(s) 138
PkrI GCNGC 6 cut(s) 64, 67, 70, 576, 814, 947
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PscI ACATGT 1 cut(s) 1108
PshAI GACNNNNGTC 1 cut(s) 110
Psp6I CCWGG 5 cut(s) 138, 246, 617, 784, 1082
PspEI GGTNACC 1 cut(s) 176
PspGI CCWGG 5 cut(s) 138, 246, 617, 784, 1082
PspN4I GGNNCC 3 cut(s) 616, 672, 979
PspPI GGNCC 3 cut(s) 614, 670, 779
PstI CTGCAG 2 cut(s) 70, 947
RsaI GTAC 1 cut(s) 767
RsaNI GTAC 1 cut(s) 766
SaqAI TTAA 2 cut(s) 285, 549
SatI GCNGC 6 cut(s) 63, 66, 69, 575, 813, 946
Sau3AI GATC 7 cut(s) 78, 90, 261, 277, 536, 609, 914
Sau96I GGNCC 3 cut(s) 614, 670, 779
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 6 cut(s) 140, 248, 619, 786, 1013, 1084
SfaNI GCATC 1 cut(s) 957
SfcI CTRYAG 2 cut(s) 66, 943
SfuI TTCGAA 1 cut(s) 360
SinI GGWCC 3 cut(s) 614, 670, 779
SmlI CTYRAG 2 cut(s) 284, 830
SmoI CTYRAG 2 cut(s) 284, 830
SphI GCATGC 2 cut(s) 22, 581
Sse9I AATT 9 cut(s) 187, 273, 371, 383, 465, 546, 728, 953, 1027
SseBI AGGCCT 1 cut(s) 168
SsiI CCGC 2 cut(s) 54, 906
StuI AGGCCT 1 cut(s) 168
StyD4I CCNGG 6 cut(s) 138, 246, 617, 784, 1011, 1082
StyI CCWWGG 1 cut(s) 816
TaaI ACNGT 2 cut(s) 88, 894
TaiI ACGT 1 cut(s) 102
TaqI TCGA 4 cut(s) 360, 800, 913, 951
TaqII GACCGA 1 cut(s) 602
TasI AATT 9 cut(s) 187, 273, 371, 383, 465, 546, 728, 953, 1027
TfiI GAWTC 2 cut(s) 251, 1132
Tru1I TTAA 2 cut(s) 285, 549
Tru9I TTAA 2 cut(s) 285, 549
TscAI CASTG 4 cut(s) 93, 100, 271, 994
TseFI GTSAC 2 cut(s) 95, 989
TseI GCWGC 6 cut(s) 62, 65, 68, 574, 812, 945
Tsp45I GTSAC 2 cut(s) 95, 989
TspDTI ATGAA 4 cut(s) 228, 252, 438, 1021
TspRI CASTG 4 cut(s) 93, 100, 271, 994
Van91I CCANNNNNTGG 1 cut(s) 109
Vha464I CTTAAG 1 cut(s) 284
VpaK11BI GGWCC 3 cut(s) 614, 670, 779
XagI CCTNNNNNAGG 1 cut(s) 789
XapI RAATTY 2 cut(s) 383, 728
XceI RCATGY 4 cut(s) 22, 581, 1104, 1112
ZraI GACGTC 1 cut(s) 100
Zsp2I ATGCAT 1 cut(s) 1102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.