Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009761

Physical Location & Seq

Genomic Coordinates Reverse (-)

41542601 .. 41549846

Gene Structure 7246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0245600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGATCTGGAACTGATCGATCTGCAGTCTTCTGACTCTGCAACTCTGATCGTCGATCTTCGACAGCCCATCAGCCTTCTCTCCGTCGATACCGCGAAGGTGAAGTTTCAATTTCATCCGAGTAATCAATCCTCGCTTTGCTTCCGTCTCCAGCCTGAAGAAGATCTCAAGTCCCTGTTTGCGTCCTTGGCTGCTCAGTCACACAACGACGGCCAATTCATCTATCCTTCGGTTTTTCAGGTTGCTGGGGTAGGAAAGAGAAGAGGAGAGATCCAGGATTGTGGTCGACCTGTGGAGGAAGATTCTGAGCTAGATAAATCCATCCCGAAGCCCACTTCCGCAGTCGGAAAGAGTCTTCCCGGTGTTGAGCTCTGTAAATCTTTTTGCTCTGCTACTGCCTCTTACTTGTTTAAACCTGCCCCTTTCAATTTTTTTGACTTGTTATTTGGGTTGTGTATGTGCAGTGAATATGAAGTTTCTAGATTGGTATTTGAAGATCGCATTCGGGTCGGCTCTGATTGGAGCTTCCATGGAGTTTTTCATGATCAAAACCGGCTTCTGTGTGAGAGCTCTCCTTTTCATCTTTACCCTTTTTCTTATTTTTCTTTTCTCAATTTTGACATTTGTATTCCCTATTTTACTGTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

216

Amino Acids

24.44

Weight (kDa)

4.97

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50930
fragaria_vesca	FvH4_4g24040
malus_domestica	MD13G1112300.v1.1
prunus_persica	Prupe.1G229600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0430751 RchiOBHm_Chr7g0222361
rosa_laevigata	RLG00000002067 RLG00000006952
rosa_roxburghii	Rroxscaffold_3G00237040 Rroxscaffold_5G00372460
rosa_rugosa	Rorug04G0245600 Rorug07G0207700
rosa_samantha	Rh4AG301600 Rh4BG309500 Rh4BG309600 Rh7AG350200 Rh7BG339800 Rh7BG339900 Rh7BG340500
rosa_wichuraiana	Rw4G026210 Rw7G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	424
AccI	GTMKAC	1 cut(s)	286
AccII	CGCG	1 cut(s)	95
AciI	CCGC	2 cut(s)	93, 339
AclWI	GGATC	2 cut(s)	12, 265
AcoI	YGGCCR	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	177
AgsI	TTSAA	3 cut(s)	110, 427, 494
AjnI	CCWGG	1 cut(s)	273
AluBI	AGCT	4 cut(s)	310, 370, 525, 570
AluI	AGCT	4 cut(s)	310, 370, 525, 570
Alw21I	GWGCWC	2 cut(s)	372, 572
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	2 cut(s)	12, 265
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	191
ArsI	GACNNNNNNTTYG	2 cut(s)	428, 460
AsuC2I	CCSGG	1 cut(s)	360
AsuHPI	GGTGA	1 cut(s)	112
BanII	GRGCYC	2 cut(s)	372, 572
BbsI	GAAGAC	2 cut(s)	21, 347
Bbv12I	GWGCWC	2 cut(s)	372, 572
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	2 cut(s)	77, 329
BceAI	ACGGC	1 cut(s)	226
BcgI	CGANNNNNNTGC	2 cut(s)	490, 524
BciT130I	CCWGG	1 cut(s)	275
BclI	TGATCA	1 cut(s)	544
BcnI	CCSGG	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	2 cut(s)	311, 480
BfmI	CTRYAG	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	424
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme1390I	CCNGG	2 cut(s)	275, 360
BmrFI	CCNGG	2 cut(s)	275, 360
BpiI	GAAGAC	2 cut(s)	21, 347
BpmI	CTGGAG	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	360
Bsa29I	ATCGAT	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	186, 529
Bse118I	RCCGGY	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	275
BseCI	ATCGAT	1 cut(s)	18
BseDI	CCNNGG	2 cut(s)	186, 529
BseGI	GGATG	2 cut(s)	115, 321
BseMII	CTCAG	2 cut(s)	209, 297
BseRI	GAGGAG	1 cut(s)	279
BseXI	GCAGC	1 cut(s)	178
BseYI	CCCAGC	1 cut(s)	245
BsgI	GTGCAG	1 cut(s)	481
Bsh1236I	CGCG	1 cut(s)	95
BshFI	GGCC	1 cut(s)	213
BshVI	ATCGAT	1 cut(s)	18
BsiHKAI	GWGCWC	2 cut(s)	372, 572
BsiSI	CCGG	2 cut(s)	360, 553
BslFI	GGGAC	1 cut(s)	157
BsmAI	GTCTC	1 cut(s)	152
BsmBI	CGTCTC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	157
BsmI	GAATGC	1 cut(s)	501
BsnI	GGCC	1 cut(s)	213
Bsp1286I	GDGCHC	2 cut(s)	372, 572
Bsp143I	GATC	9 cut(s)	4, 15, 19, 48, 55, 163, 270, 496, 544
Bsp19I	CCATGG	1 cut(s)	529
BspACI	CCGC	2 cut(s)	93, 339
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	2 cut(s)	208, 298
BspDI	ATCGAT	1 cut(s)	18
BspFNI	CGCG	1 cut(s)	95
BspHI	TCATGA	1 cut(s)	541
BspMAI	CTGCAG	1 cut(s)	27
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	2 cut(s)	12, 265
BsrFI	RCCGGY	1 cut(s)	552
BssAI	RCCGGY	1 cut(s)	552
BssECI	CCNNGG	2 cut(s)	186, 529
BssMI	GATC	9 cut(s)	4, 15, 19, 48, 55, 163, 270, 496, 544
BssT1I	CCWWGG	2 cut(s)	186, 529
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	1 cut(s)	643
Bst6I	CTCTTC	1 cut(s)	256
BstDEI	CTNAG	2 cut(s)	195, 306
BstDSI	CCRYGG	1 cut(s)	529
BstF5I	GGATG	2 cut(s)	115, 321
BstFNI	CGCG	1 cut(s)	95
BstKTI	GATC	9 cut(s)	7, 18, 22, 51, 58, 166, 273, 499, 547
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	9 cut(s)	4, 15, 19, 48, 55, 163, 270, 496, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNI	CCWGG	1 cut(s)	275
BstSCI	CCNGG	2 cut(s)	273, 358
BstSFI	CTRYAG	1 cut(s)	23
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	178
BstV2I	GAAGAC	2 cut(s)	21, 347
BstX2I	RGATCY	3 cut(s)	4, 163, 270
BstXI	CCANNNNNNTGG	1 cut(s)	281
BstYI	RGATCY	3 cut(s)	4, 163, 270
Bsu15I	ATCGAT	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	213
BsuTUI	ATCGAT	1 cut(s)	18
BtgI	CCRYGG	1 cut(s)	529
BtsCI	GGATG	2 cut(s)	115, 321
BtsI	GCAGTG	1 cut(s)	469
BtsIMutI	CAGTG	1 cut(s)	469
BveI	ACCTGC	1 cut(s)	424
CciI	TCATGA	1 cut(s)	541
Cfr10I	RCCGGY	1 cut(s)	552
ClaI	ATCGAT	1 cut(s)	18
CseI	GACGC	1 cut(s)	171
CviAII	CATG	2 cut(s)	530, 542
DdeI	CTNAG	2 cut(s)	195, 306
DpnI	GATC	9 cut(s)	6, 17, 21, 50, 57, 165, 272, 498, 546
DpnII	GATC	9 cut(s)	4, 15, 19, 48, 55, 163, 270, 496, 544
DraI	TTTAAA	1 cut(s)	412
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	256
Ecl136II	GAGCTC	2 cut(s)	370, 570
Eco130I	CCWWGG	2 cut(s)	186, 529
Eco24I	GRGCYC	2 cut(s)	372, 572
Eco53kI	GAGCTC	2 cut(s)	370, 570
Eco57I	CTGAAG	1 cut(s)	177
EcoICRI	GAGCTC	2 cut(s)	370, 570
EcoRII	CCWGG	1 cut(s)	273
EcoT14I	CCWWGG	2 cut(s)	186, 529
EcoT38I	GRGCYC	2 cut(s)	372, 572
ErhI	CCWWGG	2 cut(s)	186, 529
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	2 cut(s)	533, 545
FaiI	YATR	4 cut(s)	458, 471, 531, 543
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	2 cut(s)	529, 541
FbaI	TGATCA	1 cut(s)	544
FblI	GTMKAC	1 cut(s)	286
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	2 cut(s)	102, 308
FriOI	GRGCYC	2 cut(s)	372, 572
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	2 cut(s)	311, 480
GluI	GCNGC	1 cut(s)	192
GsaI	CCCAGC	1 cut(s)	249
GsuI	CTGGAG	1 cut(s)	134
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	2 cut(s)	360, 553
HgaI	GACGC	1 cut(s)	171
Hin1II	CATG	2 cut(s)	533, 545
HincII	GTYRAC	1 cut(s)	287
HindII	GTYRAC	1 cut(s)	287
HinfI	GANTC	3 cut(s)	35, 302, 352
HpaII	CCGG	2 cut(s)	360, 553
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188I	TCNGA	6 cut(s)	34, 48, 120, 307, 347, 517
Hpy188III	TCNNGA	4 cut(s)	8, 325, 480, 542
Hpy8I	GTNNAC	1 cut(s)	287
Hpy99I	CGWCG	3 cut(s)	56, 89, 212
HpyAV	CCTTC	3 cut(s)	86, 91, 237
HpyCH4III	ACNGT	1 cut(s)	643
HpyCH4V	TGCA	3 cut(s)	25, 41, 462
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpyF3I	CTNAG	2 cut(s)	195, 306
Hsp92II	CATG	2 cut(s)	533, 545
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	9 cut(s)	4, 15, 19, 48, 55, 163, 270, 496, 544
LmnI	GCTCC	1 cut(s)	522
Lsp1109I	GCAGC	1 cut(s)	178
MaeI	CTAG	2 cut(s)	311, 480
MaeIII	GTNAC	1 cut(s)	198
MalI	GATC	9 cut(s)	6, 17, 21, 50, 57, 165, 272, 498, 546
MboI	GATC	9 cut(s)	4, 15, 19, 48, 55, 163, 270, 496, 544
MboII	GAAGA	8 cut(s)	21, 50, 170, 173, 273, 311, 347, 506
MflI	RGATCY	3 cut(s)	4, 163, 270
MhlI	GDGCHC	2 cut(s)	372, 572
MluCI	AATT	4 cut(s)	110, 215, 427, 613
MlyI	GAGTC	2 cut(s)	29, 361
MmeI	TCCRAC	1 cut(s)	325
MnlI	CCTC	4 cut(s)	142, 257, 289, 409
MseI	TTAA	1 cut(s)	411
MspI	CCGG	2 cut(s)	360, 553
MspR9I	CCNGG	2 cut(s)	275, 360
MssI	GTTTAAAC	1 cut(s)	412
Mva1269I	GAATGC	1 cut(s)	501
MvaI	CCWGG	1 cut(s)	275
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	188
NciI	CCSGG	1 cut(s)	360
NcoI	CCATGG	1 cut(s)	529
NdeII	GATC	9 cut(s)	4, 15, 19, 48, 55, 163, 270, 496, 544
NlaIII	CATG	2 cut(s)	533, 545
NmuCI	GTSAC	1 cut(s)	198
PagI	TCATGA	1 cut(s)	541
PctI	GAATGC	1 cut(s)	501
PfeI	GAWTC	1 cut(s)	302
PfoI	TCCNGGA	1 cut(s)	273
PkrI	GCNGC	1 cut(s)	193
PleI	GAGTC	2 cut(s)	29, 360
PmeI	GTTTAAAC	1 cut(s)	412
PpsI	GAGTC	2 cut(s)	29, 360
Psp124BI	GAGCTC	2 cut(s)	372, 572
Psp6I	CCWGG	1 cut(s)	273
PspFI	CCCAGC	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	273
PstI	CTGCAG	1 cut(s)	27
PsuI	RGATCY	3 cut(s)	4, 163, 270
SacI	GAGCTC	2 cut(s)	372, 572
SalI	GTCGAC	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	9 cut(s)	4, 15, 19, 48, 55, 163, 270, 496, 544
SchI	GAGTC	2 cut(s)	29, 361
ScrFI	CCNGG	2 cut(s)	275, 360
SduI	GDGCHC	2 cut(s)	372, 572
SetI	ASST	8 cut(s)	102, 243, 292, 312, 372, 418, 527, 572
SfcI	CTRYAG	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	4 cut(s)	110, 215, 427, 613
SsiI	CCGC	2 cut(s)	93, 339
SspMI	CTAG	2 cut(s)	311, 480
SstI	GAGCTC	2 cut(s)	372, 572
StyD4I	CCNGG	2 cut(s)	273, 358
StyI	CCWWGG	2 cut(s)	186, 529
TaaI	ACNGT	1 cut(s)	643
TaqI	TCGA	5 cut(s)	18, 54, 61, 87, 286
TasI	AATT	4 cut(s)	110, 215, 427, 613
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	1 cut(s)	198
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	198
TspDTI	ATGAA	5 cut(s)	104, 208, 486, 530, 569
TspGWI	ACGGA	2 cut(s)	73, 134
TspRI	CASTG	1 cut(s)	469
XbaI	TCTAGA	1 cut(s)	479
XmiI	GTMKAC	1 cut(s)	286
XspI	CTAG	2 cut(s)	311, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.