Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009761

Physical Location & Seq

Genomic Coordinates Forward (+)

12131095 .. 12131768

Gene Structure 674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006952

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGAACCCAATGCTGAAGAACGAGTTTATTGTTGACTTGGACAGGTTCGTGAAGCGAAAGGAATTTTATGGCAAAGTAGCCAAGGCATGGAAACGAGGGTACTTGTTGTATGGTCCTCCTGGCACCGGAAAGTCAAGCTTGATTGCAGCCATGGCTAGTCACCTCAAGTTTGATATCTATGATTTGGAGCTTACATATTTACACAGCAACTCTGAGCTTAGGAGACTGTTAGTCTCCACCGCAAATCGATCAATCATAGTGATTGAGGATATTGACTGCAGCATCGAATTGAATGATAGAAAAATTAGAGGAACCAACCCCAGCGACAGCCAGTTGACACTATCCGGATTGCTCAATTTCATTGATGGTTTATGGTCAAGCTGTGGAGATGAGAGAATAATTGTGTTTACCACCAACTACAAGGACAAGCTAGATCCTGCATTGTTGAGACCAGGCCGAATGGATATGCATGTTCACATGTCCTACCGCACACCATGTGGATTCAAAACCCTTGCTCATGACTACTTTAAAGTAAAAACTCATCATCTCTTCGATGAAATGAGGTTGCAGAAGAACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

194

Amino Acids

22.26

Weight (kDa)

9.06

Isoelectric Point (pI)

32.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	34 - 161	3.1e-21	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50930
fragaria_vesca	FvH4_4g24040
malus_domestica	MD13G1112300.v1.1
prunus_persica	Prupe.1G229600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0430751 RchiOBHm_Chr7g0222361
rosa_laevigata	RLG00000002067 RLG00000006952
rosa_roxburghii	Rroxscaffold_3G00237040 Rroxscaffold_5G00372460
rosa_rugosa	Rorug04G0245600 Rorug07G0207700
rosa_samantha	Rh4AG301600 Rh4BG309500 Rh4BG309600 Rh7AG350200 Rh7BG339800 Rh7BG339900 Rh7BG340500
rosa_wichuraiana	Rw4G026210 Rw7G029560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccB7I	CCANNNNNTGG	1 cut(s)	87
AccIII	TCCGGA	1 cut(s)	344
AciI	CCGC	2 cut(s)	240, 487
AclWI	GGATC	1 cut(s)	428
AcsI	RAATTY	1 cut(s)	62
AcuI	CTGAAG	1 cut(s)	35
AdeI	CACNNNGTG	1 cut(s)	497
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	2 cut(s)	87, 125
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	2 cut(s)	292, 505
AhdI	GACNNNNNGTC	1 cut(s)	230
AjnI	CCWGG	2 cut(s)	118, 451
AluBI	AGCT	5 cut(s)	138, 190, 217, 381, 430
AluI	AGCT	5 cut(s)	138, 190, 217, 381, 430
Alw26I	GTCTC	3 cut(s)	217, 238, 442
AlwI	GGATC	1 cut(s)	428
Aor13HI	TCCGGA	1 cut(s)	344
AoxI	GGCC	1 cut(s)	454
ApeKI	GCWGC	2 cut(s)	146, 279
ApoI	RAATTY	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	122
BbvI	GCAGC	2 cut(s)	158, 291
BccI	CCATC	1 cut(s)	359
BciT130I	CCWGG	2 cut(s)	120, 453
BcoDI	GTCTC	3 cut(s)	217, 238, 442
BfaI	CTAG	2 cut(s)	156, 431
BfmI	CTRYAG	1 cut(s)	277
BisI	GCNGC	2 cut(s)	147, 280
BlsI	GCNGC	2 cut(s)	148, 281
Bme1390I	CCNGG	2 cut(s)	120, 453
Bme18I	GGWCC	1 cut(s)	113
BmeRI	GACNNNNNGTC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	2 cut(s)	124, 313
BmrFI	CCNGG	2 cut(s)	120, 453
BmsI	GCATC	1 cut(s)	291
Bpu10I	CCTNAGC	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	149
Bsa29I	ATCGAT	1 cut(s)	247
BsaI	GGTCTC	1 cut(s)	442
BsaJI	CCNNGG	2 cut(s)	81, 150
BsaWI	WCCGGW	2 cut(s)	125, 344
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 125
Bse1I	ACTGG	1 cut(s)	331
BseAI	TCCGGA	1 cut(s)	344
BseBI	CCWGG	2 cut(s)	120, 453
BseCI	ATCGAT	1 cut(s)	247
BseDI	CCNNGG	2 cut(s)	81, 150
BseLI	CCNNNNNNNGG	2 cut(s)	87, 125
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	331
BseXI	GCAGC	2 cut(s)	158, 291
BseYI	CCCAGC	1 cut(s)	320
BshFI	GGCC	1 cut(s)	456
BshNI	GGYRCC	1 cut(s)	122
BshVI	ATCGAT	1 cut(s)	247
BsiSI	CCGG	2 cut(s)	126, 345
BslI	CCNNNNNNNGG	2 cut(s)	87, 125
BsmAI	GTCTC	3 cut(s)	217, 238, 442
BsnI	GGCC	1 cut(s)	456
Bso31I	GGTCTC	1 cut(s)	442
Bsp13I	TCCGGA	1 cut(s)	344
Bsp143I	GATC	2 cut(s)	248, 433
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	2 cut(s)	240, 487
BspANI	GGCC	1 cut(s)	456
BspCNI	CTCAG	1 cut(s)	205
BspDI	ATCGAT	1 cut(s)	247
BspEI	TCCGGA	1 cut(s)	344
BspHI	TCATGA	2 cut(s)	517, 578
BspLI	GGNNCC	2 cut(s)	124, 313
BspMAI	CTGCAG	1 cut(s)	281
BspPI	GGATC	1 cut(s)	428
BspT107I	GGYRCC	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	442
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	2 cut(s)	81, 150
BssMI	GATC	2 cut(s)	248, 433
BssT1I	CCWWGG	2 cut(s)	81, 150
Bst2UI	CCWGG	2 cut(s)	120, 453
Bst4CI	ACNGT	1 cut(s)	228
Bst6I	CTCTTC	1 cut(s)	554
BstDEI	CTNAG	2 cut(s)	213, 218
BstDSI	CCRYGG	1 cut(s)	150
BstKTI	GATC	2 cut(s)	251, 436
BstMAI	GTCTC	3 cut(s)	217, 238, 442
BstMBI	GATC	2 cut(s)	248, 433
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	2 cut(s)	120, 453
BstNSI	RCATGY	2 cut(s)	473, 481
BstSCI	CCNGG	2 cut(s)	118, 451
BstSFI	CTRYAG	1 cut(s)	277
BstV1I	GCAGC	2 cut(s)	158, 291
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
Bsu15I	ATCGAT	1 cut(s)	247
BsuRI	GGCC	1 cut(s)	456
BsuTUI	ATCGAT	1 cut(s)	247
BtgI	CCRYGG	1 cut(s)	150
CciI	TCATGA	2 cut(s)	517, 578
Cfr13I	GGNCC	1 cut(s)	113
ClaI	ATCGAT	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	7 cut(s)	87, 151, 470, 478, 495, 518, 579
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	2 cut(s)	213, 218
DpnI	GATC	2 cut(s)	250, 435
DpnII	GATC	2 cut(s)	248, 433
DraI	TTTAAA	1 cut(s)	529
DraIII	CACNNNGTG	1 cut(s)	497
DriI	GACNNNNNGTC	1 cut(s)	230
Eam1104I	CTCTTC	1 cut(s)	554
Eam1105I	GACNNNNNGTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	554
Eco130I	CCWWGG	2 cut(s)	81, 150
Eco31I	GGTCTC	1 cut(s)	442
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	35
EcoRII	CCWGG	2 cut(s)	118, 451
EcoRV	GATATC	1 cut(s)	175
EcoT14I	CCWWGG	2 cut(s)	81, 150
EcoT22I	ATGCAT	1 cut(s)	471
ErhI	CCWWGG	2 cut(s)	81, 150
FaeI	CATG	7 cut(s)	90, 154, 473, 481, 498, 521, 582
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	7 cut(s)	86, 150, 469, 477, 494, 517, 578
Fnu4HI	GCNGC	2 cut(s)	147, 280
Fsp4HI	GCNGC	2 cut(s)	147, 280
FspBI	CTAG	2 cut(s)	156, 431
GluI	GCNGC	2 cut(s)	147, 280
GsaI	CCCAGC	1 cut(s)	324
HaeIII	GGCC	1 cut(s)	456
HapII	CCGG	2 cut(s)	126, 345
Hin1II	CATG	7 cut(s)	90, 154, 473, 481, 498, 521, 582
HincII	GTYRAC	2 cut(s)	34, 336
HindII	GTYRAC	2 cut(s)	34, 336
HindIII	AAGCTT	1 cut(s)	136
HinfI	GANTC	1 cut(s)	501
HpaII	CCGG	2 cut(s)	126, 345
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	4 cut(s)	34, 336, 408, 475
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	4 cut(s)	49, 345, 518, 579
Hpy8I	GTNNAC	4 cut(s)	34, 336, 408, 475
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4V	TGCA	5 cut(s)	146, 279, 440, 469, 568
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	2 cut(s)	213, 218
Hsp92II	CATG	7 cut(s)	90, 154, 473, 481, 498, 521, 582
Kpn2I	TCCGGA	1 cut(s)	344
Kzo9I	GATC	2 cut(s)	248, 433
LmnI	GCTCC	1 cut(s)	187
Lsp1109I	GCAGC	2 cut(s)	158, 291
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	2 cut(s)	156, 431
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	2 cut(s)	250, 435
MboI	GATC	2 cut(s)	248, 433
MboII	GAAGA	2 cut(s)	28, 541
MflI	RGATCY	1 cut(s)	433
MluCI	AATT	5 cut(s)	62, 287, 303, 355, 399
MnlI	CCTC	6 cut(s)	89, 126, 173, 259, 302, 555
Mph1103I	ATGCAT	1 cut(s)	471
MroI	TCCGGA	1 cut(s)	344
MseI	TTAA	1 cut(s)	528
MspI	CCGG	2 cut(s)	126, 345
MspR9I	CCNGG	2 cut(s)	120, 453
MvaI	CCWGG	2 cut(s)	120, 453
MwoI	GCNNNNNNNGC	1 cut(s)	152
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	2 cut(s)	248, 433
NlaIII	CATG	7 cut(s)	90, 154, 473, 481, 498, 521, 582
NlaIV	GGNNCC	2 cut(s)	124, 313
NmuCI	GTSAC	1 cut(s)	158
NsiI	ATGCAT	1 cut(s)	471
NspI	RCATGY	2 cut(s)	473, 481
PagI	TCATGA	2 cut(s)	517, 578
PciI	ACATGT	1 cut(s)	477
PfeI	GAWTC	1 cut(s)	501
PflMI	CCANNNNNTGG	1 cut(s)	87
PkrI	GCNGC	2 cut(s)	148, 281
PscI	ACATGT	1 cut(s)	477
Psp6I	CCWGG	2 cut(s)	118, 451
PspFI	CCCAGC	1 cut(s)	320
PspGI	CCWGG	2 cut(s)	118, 451
PspN4I	GGNNCC	2 cut(s)	124, 313
PspPI	GGNCC	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	433
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	2 cut(s)	147, 280
Sau3AI	GATC	2 cut(s)	248, 433
Sau96I	GGNCC	1 cut(s)	113
ScrFI	CCNGG	2 cut(s)	120, 453
SetI	ASST	8 cut(s)	47, 140, 165, 192, 219, 383, 432, 566
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	1 cut(s)	277
SinI	GGWCC	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	5 cut(s)	62, 287, 303, 355, 399
SsiI	CCGC	2 cut(s)	240, 487
SspMI	CTAG	2 cut(s)	156, 431
StyD4I	CCNGG	2 cut(s)	118, 451
StyI	CCWWGG	2 cut(s)	81, 150
TaaI	ACNGT	1 cut(s)	228
TaqI	TCGA	3 cut(s)	247, 285, 552
TasI	AATT	5 cut(s)	62, 287, 303, 355, 399
TfiI	GAWTC	1 cut(s)	501
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	2 cut(s)	146, 279
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	3 cut(s)	17, 349, 570
Van91I	CCANNNNNTGG	1 cut(s)	87
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	62
XceI	RCATGY	2 cut(s)	473, 481
XspI	CTAG	2 cut(s)	156, 431
Zsp2I	ATGCAT	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.