Rh4BG309500

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0009761
Physical Location & Seq
Reverse (-)
47820164 .. 47820487
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG309500.1

Sequence Viewer

Length: 324 bp
ATGGTTTATGGTCAAGCTGTGGAGATGAGAGAAGCATTGTTGAGACCAGGCCGAATGGATATGCATGTTCACATGTCCTACTGCACACCATGTGGATTCAAAACCCTTGCTCATAACTACTTTAAAGTAAAAACTCATCATCTCTTCAATGAAATTGAAAAATTCATAAAGGAGGTTGATACGACTCCAGCAGAGATTGCAGAAGAACTCATGAAAAGTGAAGACACCGATATAGCGCTGGGAGGACTCATTGCATTCCTGAAGAAGAAGAAAGAGATGAACTGCAGTGCTGAAGCCAACGTTGAAAAAAACAATAGAAAATAA

Protein Analysis

107

Amino Acids

12.29

Weight (kDa)

6.96

Isoelectric Point (pI)

31.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_lid_At3g28540 PF25568 28 - 96 3.2e-25 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 300
AcsI RAATTY 1 cut(s) 161
AcuI CTGAAG 2 cut(s) 281, 312
AdeI CACNNNGTG 1 cut(s) 92
AfeI AGCGCT 1 cut(s) 237
AflIII ACRYGT 1 cut(s) 72
AgsI TTSAA 4 cut(s) 100, 148, 158, 305
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 37
Aor51HI AGCGCT 1 cut(s) 237
AoxI GGCC 1 cut(s) 49
ApoI RAATTY 1 cut(s) 161
AspLEI GCGC 1 cut(s) 238
BbsI GAAGAC 1 cut(s) 228
BciT130I CCWGG 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 37
BfmI CTRYAG 1 cut(s) 283
BfoI RGCGCY 1 cut(s) 239
Bme1390I CCNGG 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 48
BpiI GAAGAC 1 cut(s) 228
BpmI CTGGAG 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 37
Bse3DI GCAATG 1 cut(s) 249
BseBI CCWGG 1 cut(s) 48
BseMI GCAATG 1 cut(s) 249
BseYI CCCAGC 1 cut(s) 238
BsgI GTGCAG 1 cut(s) 67
BshFI GGCC 1 cut(s) 51
BsmAI GTCTC 1 cut(s) 37
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 1 cut(s) 51
Bso31I GGTCTC 1 cut(s) 37
BspANI GGCC 1 cut(s) 51
BspHI TCATGA 1 cut(s) 210
BspMAI CTGCAG 1 cut(s) 287
BspTNI GGTCTC 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 48
Bst6I CTCTTC 1 cut(s) 149
BstAPI GCANNNNNTGC 1 cut(s) 197
BstH2I RGCGCY 1 cut(s) 239
BstHHI GCGC 1 cut(s) 238
BstMAI GTCTC 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 1 cut(s) 48
BstNSI RCATGY 2 cut(s) 68, 76
BstSCI CCNGG 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 283
BstV2I GAAGAC 1 cut(s) 228
BsuRI GGCC 1 cut(s) 51
BtsI GCAGTG 1 cut(s) 292
BtsIMutI CAGTG 1 cut(s) 292
CciI TCATGA 1 cut(s) 210
CfoI GCGC 1 cut(s) 238
CviAII CATG 4 cut(s) 65, 73, 90, 211
CviJI RGCY 3 cut(s) 17, 51, 296
CviKI_1 RGCY 3 cut(s) 17, 51, 296
DraI TTTAAA 1 cut(s) 124
DraIII CACNNNGTG 1 cut(s) 92
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco31I GGTCTC 1 cut(s) 37
Eco47III AGCGCT 1 cut(s) 237
Eco57I CTGAAG 2 cut(s) 281, 312
EcoRII CCWGG 1 cut(s) 46
EcoT22I ATGCAT 1 cut(s) 66
FaeI CATG 4 cut(s) 68, 76, 93, 214
FaiI YATR 9 cut(s) 9, 62, 66, 74, 91, 114, 167, 212, 233
FatI CATG 4 cut(s) 64, 72, 89, 210
GlaI GCGC 1 cut(s) 237
GsaI CCCAGC 1 cut(s) 242
GsuI CTGGAG 1 cut(s) 171
HaeII RGCGCY 1 cut(s) 239
HaeIII GGCC 1 cut(s) 51
HhaI GCGC 1 cut(s) 238
Hin1II CATG 4 cut(s) 68, 76, 93, 214
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HinfI GANTC 3 cut(s) 96, 184, 246
Hpy166II GTNNAC 1 cut(s) 70
Hpy188III TCNNGA 2 cut(s) 211, 259
Hpy8I GTNNAC 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 5 cut(s) 64, 84, 200, 254, 285
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 4 cut(s) 68, 76, 93, 214
HspAI GCGC 1 cut(s) 236
LpnPI CCDG 5 cut(s) 33, 60, 201, 224, 272
MaeII ACGT 1 cut(s) 300
MboII GAAGA 6 cut(s) 136, 215, 233, 274, 277, 280
MluCI AATT 2 cut(s) 153, 161
MlyI GAGTC 2 cut(s) 178, 240
MnlI CCTC 2 cut(s) 166, 236
Mph1103I ATGCAT 1 cut(s) 66
MseI TTAA 1 cut(s) 123
MspR9I CCNGG 1 cut(s) 48
Mva1269I GAATGC 1 cut(s) 254
MvaI CCWGG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 197
NlaIII CATG 4 cut(s) 68, 76, 93, 214
NsiI ATGCAT 1 cut(s) 66
NspI RCATGY 2 cut(s) 68, 76
PagI TCATGA 1 cut(s) 210
PciI ACATGT 1 cut(s) 72
PctI GAATGC 1 cut(s) 254
PfeI GAWTC 1 cut(s) 96
PleI GAGTC 2 cut(s) 178, 240
PpsI GAGTC 2 cut(s) 178, 240
PscI ACATGT 1 cut(s) 72
Psp1406I AACGTT 1 cut(s) 300
Psp6I CCWGG 1 cut(s) 46
PspFI CCCAGC 1 cut(s) 238
PspGI CCWGG 1 cut(s) 46
PstI CTGCAG 1 cut(s) 287
SaqAI TTAA 1 cut(s) 123
SchI GAGTC 2 cut(s) 178, 240
ScrFI CCNGG 1 cut(s) 48
SetI ASST 3 cut(s) 19, 177, 303
SfcI CTRYAG 1 cut(s) 283
Sse9I AATT 2 cut(s) 153, 161
StyD4I CCNGG 1 cut(s) 46
TaiI ACGT 1 cut(s) 303
TasI AATT 2 cut(s) 153, 161
TfiI GAWTC 1 cut(s) 96
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 1 cut(s) 292
TspDTI ATGAA 4 cut(s) 154, 165, 227, 293
TspRI CASTG 1 cut(s) 292
XapI RAATTY 1 cut(s) 161
XceI RCATGY 2 cut(s) 68, 76
Zsp2I ATGCAT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.