AT3G52250
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005694
Physical Location & Seq
Forward (+)
19376138 .. 19383369
7232 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G52250.1

Sequence Viewer

Length: 4971 bp
ATGCCGCAGGATCACGCTTCGTGGGATCGGAAAGAGCTCTTGAGGCAAAGGAAACACGATAGGCCTGAACAATCTTTTGAATCCCCGCCTTTTCGATGGAGGGATTCGCCTTCTTCTCACCATGTTCCTCGAGAGTTTTCTTCTCGTTTGGGATCTGGAGACTTCCGCAGACCTTCTTGTCATGGTAAGCAGGGTGGACGGCACCAGTTTGTGGAGGAGACTAGTCATGGATACACATCTTCTCGGTCCAGTGCCCGAATGTTTGATAATTATAGGCCATCAGCATCGCGTGGAGACTGGAGATATACCAGGAATTGCAGGGATGATAGAGTTTCTGTAAGCCAAAAGGAATGGAAATGCAATACATGGGAGATGAGCAACGGATCTTCTAGAAGTTTTGAGAGGCCATTTGGTATTAGAAATGGTCGGAGGTCAGTTGATGAAAGGCCGCTACATGCTTCAGATACTCATTCTACCGTGGTGAACTCTTTGGATCCAGCCAACTCGGCTCATTATCTGGACAATGAGATCAGTACCCCAGTACGGTCTCTTAAAATTAAAAATGAGCATAAATTTTCAGATCAAAGGTTATCACTTCCTTCAGATCCTCATTCTGAATGTATTAGCTTGTTTGAACGGCCTTCTTCTGAGAACAATTATGGCAATAAGGTTTGTTCACCAGCAAAGCAATGCAATGATTTGATGTATGGTCGAAGGTTAGTTAGTGATAATTCATTAGATGCTCCAATCCCCAATGCAGAGCTGGAGGGGACTTGGGAACAACTTCGCCTGAAAGACCCGCAAGATAACAATAGTTTACATGGTATCAATGATATAGACGGTGATAGGAAATGTGCAAAGGAGAGTTCTCTGGGAGCAACTGGGAAACTTCCACTGTGGAATAGTTCTGGGAGTTTTGCATCTCAGAGTTCAGGTTTTAGTCATTCAAGTAGCTTGAAAAGCTTGGGGGCTGTTGATTCCAGCGATCGGAAGATTGAGGTTCTTCCTAAAATTGTTACTGTGACTCAATCTTCTTCAGGAGACGCTACTGCCTGTGCCACAACTACTCATCTTTCTGAGGAGATGAGTTCTAGAAAGAAACAACGTCTCGGGTGGGGTGAGGGACTGGCGAAATATGAGAAAAAGAAAGTTGATGTTAACCCAAATGAAGATGGAACAACATTGATGGAAAACGGTTTAGAGGAACTACATTCGTTAAACAAAAATATTGCTGATAAAAGTCCCACAGCAGCCATTGTTCCAGATTATGGTTCCCCTACAACACCATCCTCTGTAGCTTGCAGTTCATCACCAGGGTTTGCTGATAAATCATCTCCGAAGGCTGCTATAGCTGCTAGTGATGTCAGTAACATGTGCCGTTCGCCTAGTCCCGTGTCTAGTATTCACCTTGAACGATTCCCAATCAATATCGAGGAGCTCGATAACATCTCAATGGAGCGTTTTGGCTGTTTACTCAATGAGTTACTTGGTACTGATGATTCTGGTACAGGGGATTCCAGTTCTGTCCAATTGACATCAATGAACACATTACTTGCCTGGAAAGGTGAAATTTTGAAAGCTGTGGAGATGACTGAATCAGAAATTGATCTCCTTGAAAACAAACATAGGACACTAAAGCTTGAAGGTAGAAGACACTCTCGTGTTGTTGGACCCAGTTCATACTGTTGTGATGGAGATGCAAATGTGCCCAAGGAGCAGGCTTCTTGTAGTTTGGATCCTAAGGCAACAGCTTCTTCTGTAGCTAAAACACTGGTGAGAGCTCCTGTGCATCAGGCTGGTTTAGCCAAGGTTCCTGCTGATGTTTTTGAAGATAGTCCTGGGGAAGTTAAACCTCTATCCCAATCTTTTGCCACTGTTGAAAGAGAGGAAGATATACTGCCCATACCATCTATGAAGGCAGCTGTTTCTTCGAAAGAGATTAACACACCTGCTTTTGCCAATCAGGAAACTATTGAGGTTTCTTCTGCTGATGACAGCATGGCCTCCAAAGAAGACTTGTTCTGGGCTAAGTTATTATCTGCCAATAAGAAATATGCTTGTGAATCATCTGGAGTATTCAATCAATTGCTTCCAAGAGATTTTAATTCGTCTGACAACTCAAGATTCCCTGGCATATGTCAAACGCAGTTTGATTCTCATGTCCAAGAAAAAATTGCAGATAGGGTAGGCCTATTGAGAGCTAGGGAGAAAATTTTACTCCTTCAGTTTAAAGCGTTTCAGCTCTCATGGAAGAAAGATTTGGATCAGCTAGCTTTAGCAAAGTACCAATCAAAGTCTAGCAAAAAAACAGAACTATATCCGAATGCAAAAAATGGAGGGTATCTGAAGCTTCCCCAATCTGTACGCCTGAGGTTCTCTTCTTCAGCTCCAAGAAGGGATAGTGTAGTCCCCACAACAGAGCTCGTAAGTTATATGGAAAAGCTACTTCCGGGTACCCATCTAAAGCCTTTTAGAGACATTTTGAAAATGCCTGCTATGATTTTGGATGAGAAAGAGAGGGTGATGTCGAGGTTTATTTCTAGCAATGGACTGATTGAAGATCCATGTGACGTTGAGAAGGAAAGAACAATGATTAATCCTTGGACCTCAGAGGAGAAAGAAATCTTTCTGAATTTGCTAGCAATGCATGGGAAGGATTTCAAGAAGATTGCTTCATCTCTTACCCAAAAGACAACTGCGGACTGTATTGATTACTACTACAAAAACCACAAGTCTGATTGTTTTGGGAAAATAAAGAAGCAGCGTGCTTATGGTAAGGAAGGGAAGCACACCTACATGTTGGCTCCACGAAAAAAGTGGAAACGTGAGATGGGGGCTGCCTCTCTTGATATTTTAGGGGATGTCTCCATTATAGCAGCAAACGCTGGAAAGGTTGCATCAACCAGGCCGATCTCTTCCAAAAAGATCACCCTTAGAGGTTGCAGCAGTGCTAATTCATTGCAGCACGATGGAAATAACTCTGAAGGGTGCTCCTACAGTTTTGATTTCCCACGTAAGAGAACTGCTGGTGCAGATGTTTTAGCTGTTGGTCCTTTGTCACCAGAGCAGATAAATTCTTGCTTAAGGACTTCTGTGAGCTCTAGAGAGAGGTGTATGGATCATCTGAAGTTTAATCATGTCGTAAAGAAACCTCGGATATCTCATACTCTACATAATGAGAACAGCAATACTCTACACAATGAGAACAGCAACGAAGAAGATGACTCATGTTCGGAAGAGAGCTGTGGGGAAACAGGTCCTATTCACTGGACAGATGATGAGAGATCTGCCTTTATACAGGGTTTTTCGCTTTTTGGCAAGAATTTTGCTTCAATATCAAGGTACGTCGGGACAAGATCTCCAGATCAGTGTAAGGTTTTCTTCAGCAAAGTTCGGAAATGTCTTGGGTTGGAATCTATAAAGTTTGGATCTGGAAATGTAAGCACATCCGTAAGTGTTGATAATGGCAATGAGGGTGGTGGGAGCGACTTGGAAGATCCTTGTCCTATGGAGAGTAACTCTGGCATAGTGAATAATGGAGTTTGTGCCAAGATGGGTATGAATTCTCCTACCTCACCTTTTAATATGAATCAGGATGGTGTTAATCAATCAGGCTCTGCAAATGTGAAAGCCGACCTTAGTAGATCAGAAGAAGAGAATGGGCAGAAATATTTGTGTCTGAAAGATGATAATAATCTCGTGAACAATGCATATGTCAATGGCGGTTTCCCGAGTCTAGTTTCAGAATCTTGTAGAGATTTGGTAGATATTAATACTGTTGAGAGCCAGTCTCAGGCTGCCGGAAAAAGCAAGAGCAATGATCTCATGTCAATGGAAATCGATGAAGGTGTCTTAACATCTGTCACTATATCTTCCGAGCCATTGTATTGTGGCCTAAGTGTTCTTTCCAATGTTATTGTGGAAACCCCTACAGAAATCTCACGAAAGGGCTCAGGAGATCAAGGTGCTACAATGCCTAAATTTAGTTCAAAGAATCAAGATGGAGTGATGCAAGCTGCAAACAGAACCAGAAATTCTGGCCTTGAACCTGAAAGTGCACCTTCAGGTTTCAGGTACCCTGAGTGTCTTCACCATGTTCCGATTGAGGTGTGTACGGAAAACCCTATAGGCGTCAGTGCACCACGAGGAAATCCAAATTGCCATGCAGAGTCCGAGTCAGGAAATTCTCTTGTTGGACAAGTTGACGAAACACATGACTTGGGTTGGCCCAAGAACAATCTGGAATTGGATGGGAGGCTTCAGGTTTTAGGCCATGTAAACCCTGAGCAGATTGGTCTACTAAAAGCGACCAATACAGAATCTTGTCAAAATCCCCAGAGATCAGTCACCCAAGATCTGAGCAGGATAAGTAGATCAAAATCTGATTTGATCGTAAAAACCCAACGTACAGGTGAAGGCTTCTCACTCACCAAGTGTACTAGTTCAGCTCCTAAGCCTCTGGCAGTATCCCATAAAGAGGGCAGATCTGGTCATAGCAGGAGCCATTCGTTTAGTTTGTCTGATACTGAGAGACTCCACAAGAATGGAGATGTGAAACTGTTTGGTACAGTACTTACTACTGATGAGAATGGAATAAAACAAAAACACAATCCATGTGGAATTGTCAGGTCATCATCAACCTTGAGCAGGGACCATGATACAAGACATCATTACATTAATCAGCAACACCTTCAGAACGTTCCCATTACGAGCTACGGTTTTTGGGATGGCAACAGAATTCAAACCGGGCTCACATCTTTGCCAGAGTCGGCCAAGTTGCTTGCAAGTTGCCCTGAAGCATTTTCCACGCATCTAAAGCAGCAAGTTGGTAACAGCAAAGAGATTCTGGTGGATGTTAATGGTGGAATTTTGAGCTTTGGTAAGCATAACGAAGATAGAGCTGAGTCCTCAAGCGCTAAGGATGAAGGTAACATAGGAGGGGTAAATGGTGTAGCAGAGGCAGCCACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000226 GO:0000228 GO:0000785 GO:0000790 GO:0000981 GO:0001067 GO:0001085 GO:0001102 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0003714 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005874 GO:0005876 GO:0006109 GO:0006110 GO:0006139 GO:0006140 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009966 GO:0009968 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0015630 GO:0016043 GO:0016070 GO:0016922 GO:0017053 GO:0018130 GO:0019216 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019899 GO:0022402 GO:0022607 GO:0023051 GO:0023057 GO:0030808 GO:0030811 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032368 GO:0032774 GO:0032872 GO:0032873 GO:0032879 GO:0032890 GO:0032991 GO:0033613 GO:0034641 GO:0034645 GO:0034654 GO:0035257 GO:0042325 GO:0042326 GO:0042826 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043408 GO:0043409 GO:0043467 GO:0043470 GO:0044070 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0045936 GO:0046328 GO:0046329 GO:0046483 GO:0046966 GO:0048511 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051172 GO:0051174 GO:0051193 GO:0051196 GO:0051225 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051427 GO:0060147 GO:0060149 GO:0060255 GO:0060964 GO:0060965 GO:0060966 GO:0060967 GO:0060968 GO:0060969 GO:0062012 GO:0065007 GO:0070013 GO:0070302 GO:0070303 GO:0070920 GO:0070925 GO:0071704 GO:0071840 GO:0072361 GO:0072362 GO:0072367 GO:0072368 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0097659 GO:0098679 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140110 GO:1900371 GO:1900402 GO:1900542 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:1903578 GO:1903798 GO:1903799 GO:1905952 GO:2000112 GO:2000113 GO:2000191 GO:2001141 GO:2001169
KEGG Pathways
Metabolic & Signaling
ko01522 ko04919 ko05202 map01522 map04919 map05202
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

1656

Amino Acids

181.75

Weight (kDa)

6.64

Isoelectric Point (pI)

53.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 867 - 909 5.1e-11 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 868 - 913 4.5e-06 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 1090 - 1131 2.6e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1957
AasI GACNNNNNNGTC 1 cut(s) 177
Acc36I ACCTGC 1 cut(s) 1957
Acc65I GGTACC 2 cut(s) 2453, 4074
AccB1I GGYRCC 3 cut(s) 201, 2453, 4074
AccB7I CCANNNNNTGG 2 cut(s) 211, 1268
AccI GTMKAC 1 cut(s) 4297
AccII CGCG 1 cut(s) 289
AciI CCGC 7 cut(s) 5, 86, 166, 449, 800, 2699, 3723
AclI AACGTT 1 cut(s) 4698
AcoI YGGCCR 1 cut(s) 4770
AcvI CACGTG 1 cut(s) 4968
AcyI GRCGYC 1 cut(s) 4131
AdeI CACNNNGTG 1 cut(s) 4434
AfeI AGCGCT 1 cut(s) 4915
AfiI CCNNNNNNNGG 7 cut(s) 211, 543, 987, 1268, 3793, 4477, 4647
AflII CTTAAG 1 cut(s) 3082
AflIII ACRYGT 2 cut(s) 1371, 2796
AhlI ACTAGT 2 cut(s) 221, 4439
AjnI CCWGG 6 cut(s) 308, 1312, 1556, 1837, 2128, 2903
AjuI GAANNNNNNNTTGG 2 cut(s) 2243, 2275
AleI CACNNNNGTG 1 cut(s) 1659
Alw21I GWGCWC 8 cut(s) 39, 1440, 1783, 2424, 2993, 3101, 4060, 4141
Alw44I GTGCAC 2 cut(s) 4056, 4137
AlwNI CAGNNNCTG 1 cut(s) 3617
Ama87I CYCGRG 3 cut(s) 129, 1109, 3730
Aor51HI AGCGCT 1 cut(s) 4915
ApaLI GTGCAC 2 cut(s) 4056, 4137
AseI ATTAAT 3 cut(s) 2595, 3771, 4677
Asp700I GAANNNNTTC 3 cut(s) 783, 2625, 2657
Asp718I GGTACC 2 cut(s) 2453, 4074
AspLEI GCGC 1 cut(s) 4916
AspS9I GGNCC 7 cut(s) 246, 1670, 2604, 3050, 3257, 4227, 4651
AsuC2I CCSGG 2 cut(s) 2451, 4747
AsuII TTCGAA 1 cut(s) 1931
AsuNHI GCTAGC 2 cut(s) 2269, 2638
AvaI CYCGRG 3 cut(s) 129, 1109, 3730
AvaII GGWCC 6 cut(s) 246, 1670, 2604, 3050, 3257, 4651
AxyI CCTNAGG 2 cut(s) 1740, 2369
BaeGI GKGCMC 4 cut(s) 256, 1710, 4060, 4141
BamHI GGATCC 2 cut(s) 493, 1735
BanI GGYRCC 3 cut(s) 201, 2453, 4074
BanII GRGCYC 7 cut(s) 39, 1440, 1783, 2424, 3101, 3953, 4752
BarI GAAGNNNNNNTAC 2 cut(s) 2777, 2809
BauI CACGAG 3 cut(s) 1659, 3698, 4143
BbrPI CACGTG 1 cut(s) 4968
BbsI GAAGAC 3 cut(s) 1657, 2019, 4079
Bbv12I GWGCWC 8 cut(s) 39, 1440, 1783, 2424, 2993, 3101, 4060, 4141
BceAI ACGGC 3 cut(s) 215, 653, 1362
BciT130I CCWGG 6 cut(s) 310, 1314, 1558, 1839, 2130, 2905
BciVI GTATCC 2 cut(s) 224, 4477
BcnI CCSGG 2 cut(s) 2451, 4747
BcuI ACTAGT 2 cut(s) 221, 4439
BfmI CTRYAG 6 cut(s) 1293, 1347, 1758, 2995, 3930, 4125
BfoI RGCGCY 1 cut(s) 4917
BfrI CTTAAG 1 cut(s) 3082
BfuAI ACCTGC 1 cut(s) 1957
BfuI GTATCC 2 cut(s) 224, 4477
BglI GCCNNNNNGGC 1 cut(s) 506
BglII AGATCT 4 cut(s) 3284, 3356, 4354, 4484
BmcAI AGTACT 1 cut(s) 4572
Bme1390I CCNGG 8 cut(s) 310, 1314, 1558, 1839, 2130, 2451, 2905, 4747
Bme18I GGWCC 6 cut(s) 246, 1670, 2604, 3050, 3257, 4651
BmeT110I CYCGRG 3 cut(s) 129, 1109, 3730
BmgT120I GGNCC 7 cut(s) 246, 1670, 2604, 3050, 3257, 4227, 4651
BmrFI CCNGG 8 cut(s) 310, 1314, 1558, 1839, 2130, 2451, 2905, 4747
BmrI ACTGGG 3 cut(s) 533, 891, 1668
BmsI GCATC 8 cut(s) 293, 730, 929, 1687, 1798, 2906, 3999, 4819
BmtI GCTAGC 2 cut(s) 2273, 2642
BmuI ACTGGG 3 cut(s) 533, 891, 1668
BpiI GAAGAC 3 cut(s) 1657, 2019, 4079
BplI GAGNNNNNCTC 4 cut(s) 3503, 3535, 3775, 3807
BpmI CTGGAG 5 cut(s) 177, 319, 785, 2091, 3345
Bpu10I CCTNAGC 4 cut(s) 3952, 4284, 4452, 4917
Bpu14I TTCGAA 1 cut(s) 1931
BpuEI CTTGAG 4 cut(s) 61, 2104, 4663, 4894
BpuMI CCSGG 2 cut(s) 2451, 4747
Bsa29I ATCGAT 1 cut(s) 3840
BsaAI YACGTR 2 cut(s) 3014, 4968
BsaBI GATNNNNATC 4 cut(s) 235, 2262, 3693, 4378
BsaHI GRCGYC 1 cut(s) 4131
BsaI GGTCTC 1 cut(s) 552
BsaJI CCNNGG 8 cut(s) 477, 1313, 1710, 1806, 1838, 2128, 2600, 3152
BsaXI ACNNNNNCTCC 2 cut(s) 3343, 3373
Bsc4I CCNNNNNNNGG 7 cut(s) 211, 543, 987, 1268, 3793, 4477, 4647
Bse21I CCTNAGG 2 cut(s) 1740, 2369
Bse3DI GCAATG 7 cut(s) 695, 700, 2551, 2649, 2957, 3475, 3823
Bse8I GATNNNNATC 4 cut(s) 235, 2262, 3693, 4378
BseBI CCWGG 6 cut(s) 310, 1314, 1558, 1839, 2130, 2905
BseCI ATCGAT 1 cut(s) 3840
BseDI CCNNGG 8 cut(s) 477, 1313, 1710, 1806, 1838, 2128, 2600, 3152
BseJI GATNNNNATC 4 cut(s) 235, 2262, 3693, 4378
BseLI CCNNNNNNNGG 7 cut(s) 211, 543, 987, 1268, 3793, 4477, 4647
BseMI GCAATG 7 cut(s) 695, 700, 2551, 2649, 2957, 3475, 3823
BseRI GAGGAG 4 cut(s) 230, 1094, 1448, 2627
BseSI GKGCMC 4 cut(s) 256, 1710, 4060, 4141
BsgI GTGCAG 1 cut(s) 3051
Bsh1236I CGCG 1 cut(s) 289
Bsh1285I CGRYCG 1 cut(s) 988
BshNI GGYRCC 3 cut(s) 201, 2453, 4074
BshVI ATCGAT 1 cut(s) 3840
BsiEI CGRYCG 1 cut(s) 988
BsiHKAI GWGCWC 8 cut(s) 39, 1440, 1783, 2424, 2993, 3101, 4060, 4141
BsiHKCI CYCGRG 3 cut(s) 129, 1109, 3730
BsiSI CCGG 3 cut(s) 2450, 3801, 4746
BslFI GGGAC 7 cut(s) 784, 1137, 1227, 1374, 2393, 3364, 4664
BslI CCNNNNNNNGG 7 cut(s) 211, 543, 987, 1268, 3793, 4477, 4647
BsmBI CGTCTC 2 cut(s) 1035, 1112
BsmFI GGGAC 7 cut(s) 784, 1137, 1227, 1374, 2393, 3364, 4664
BsmI GAATGC 1 cut(s) 2329
Bso31I GGTCTC 1 cut(s) 552
BsoBI CYCGRG 3 cut(s) 129, 1109, 3730
Bsp119I TTCGAA 1 cut(s) 1931
BspACI CCGC 7 cut(s) 5, 86, 166, 449, 800, 2699, 3723
BspDI ATCGAT 1 cut(s) 3840
BspFNI CGCG 1 cut(s) 289
BspMI ACCTGC 1 cut(s) 1957
BspOI GCTAGC 2 cut(s) 2273, 2642
BspT104I TTCGAA 1 cut(s) 1931
BspT107I GGYRCC 3 cut(s) 201, 2453, 4074
BspTI CTTAAG 1 cut(s) 3082
BspTNI GGTCTC 1 cut(s) 552
BsrDI GCAATG 7 cut(s) 695, 700, 2551, 2649, 2957, 3475, 3823
BssECI CCNNGG 8 cut(s) 477, 1313, 1710, 1806, 1838, 2128, 2600, 3152
BssNI GRCGYC 1 cut(s) 4131
BssSI CACGAG 3 cut(s) 1659, 3698, 4143
BssT1I CCWWGG 3 cut(s) 1710, 1806, 2600
Bst2BI CACGAG 3 cut(s) 1659, 3698, 4143
Bst2UI CCWGG 6 cut(s) 310, 1314, 1558, 1839, 2130, 2905
Bst6I CTCTTC 4 cut(s) 2383, 2920, 3231, 3648
BstACI GRCGYC 1 cut(s) 4131
BstAFI CTTAAG 1 cut(s) 3082
BstBAI YACGTR 2 cut(s) 3014, 4968
BstBI TTCGAA 1 cut(s) 1931
BstC8I GCNNGC 8 cut(s) 1300, 1719, 2271, 2493, 2640, 2766, 4014, 4782
BstDSI CCRYGG 1 cut(s) 477
BstENI CCTNNNNNAGG 1 cut(s) 4645
BstFNI CGCG 1 cut(s) 289
BstH2I RGCGCY 1 cut(s) 4917
BstHHI GCGC 1 cut(s) 4916
BstMCI CGRYCG 1 cut(s) 988
BstNI CCWGG 6 cut(s) 310, 1314, 1558, 1839, 2130, 2905
BstNSI RCATGY 3 cut(s) 458, 1375, 2800
BstSCI CCNGG 8 cut(s) 308, 1312, 1556, 1837, 2128, 2449, 2903, 4745
BstSFI CTRYAG 6 cut(s) 1293, 1347, 1758, 2995, 3930, 4125
BstSLI GKGCMC 4 cut(s) 256, 1710, 4060, 4141
BstUI CGCG 1 cut(s) 289
BstV2I GAAGAC 3 cut(s) 1657, 2019, 4079
BstXI CCANNNNNNTGG 1 cut(s) 4544
Bsu15I ATCGAT 1 cut(s) 3840
Bsu36I CCTNAGG 2 cut(s) 1740, 2369
BsuI GTATCC 2 cut(s) 224, 4477
BsuTUI ATCGAT 1 cut(s) 3840
BtgI CCRYGG 1 cut(s) 477
BtgZI GCGATG 1 cut(s) 270
BtsI GCAGTG 1 cut(s) 2953
BtsIMutI CAGTG 8 cut(s) 256, 893, 1769, 1872, 2953, 3265, 3374, 4141
BveI ACCTGC 1 cut(s) 1957
Cac8I GCNNGC 8 cut(s) 1300, 1719, 2271, 2493, 2640, 2766, 4014, 4782
CaiI CAGNNNCTG 1 cut(s) 3617
CfoI GCGC 1 cut(s) 4916
Cfr13I GGNCC 7 cut(s) 246, 1670, 2604, 3050, 3257, 4227, 4651
ClaI ATCGAT 1 cut(s) 3840
CseI GACGC 2 cut(s) 1052, 4120
CspCI CAANNNNNGTGG 4 cut(s) 3457, 3492, 4597, 4632
DraI TTTAAA 1 cut(s) 2230
DraIII CACNNNGTG 1 cut(s) 4434
DrdI GACNNNNNNGTC 1 cut(s) 177
DseDI GACNNNNNNGTC 1 cut(s) 177
EaeI YGGCCR 1 cut(s) 4770
Eam1104I CTCTTC 4 cut(s) 2383, 2920, 3231, 3648
EarI CTCTTC 4 cut(s) 2383, 2920, 3231, 3648
Ecl136II GAGCTC 5 cut(s) 37, 1438, 1781, 2422, 3099
Eco130I CCWWGG 3 cut(s) 1710, 1806, 2600
Eco147I AGGCCT 2 cut(s) 64, 2190
Eco24I GRGCYC 7 cut(s) 39, 1440, 1783, 2424, 3101, 3953, 4752
Eco31I GGTCTC 1 cut(s) 552
Eco32I GATATC 1 cut(s) 3159
Eco47I GGWCC 6 cut(s) 246, 1670, 2604, 3050, 3257, 4651
Eco47III AGCGCT 1 cut(s) 4915
Eco53kI GAGCTC 5 cut(s) 37, 1438, 1781, 2422, 3099
Eco72I CACGTG 1 cut(s) 4968
Eco81I CCTNAGG 2 cut(s) 1740, 2369
Eco88I CYCGRG 3 cut(s) 129, 1109, 3730
EcoICRI GAGCTC 5 cut(s) 37, 1438, 1781, 2422, 3099
EcoNI CCTNNNNNAGG 1 cut(s) 4645
EcoO109I RGGNCCY 1 cut(s) 3257
EcoRI GAATTC 2 cut(s) 3562, 4737
EcoRII CCWGG 6 cut(s) 308, 1312, 1556, 1837, 2128, 2903
EcoRV GATATC 1 cut(s) 3159
EcoT14I CCWWGG 3 cut(s) 1710, 1806, 2600
EcoT22I ATGCAT 2 cut(s) 2649, 3712
EcoT38I GRGCYC 7 cut(s) 39, 1440, 1783, 2424, 3101, 3953, 4752
ErhI CCWWGG 3 cut(s) 1710, 1806, 2600
Esp3I CGTCTC 2 cut(s) 1035, 1112
FalI AAGNNNNNCTT 6 cut(s) 3365, 3397, 3621, 3653, 4045, 4077
FaqI GGGAC 7 cut(s) 784, 1137, 1227, 1374, 2393, 3364, 4664
FauI CCCGC 2 cut(s) 93, 807
FauNDI CATATG 2 cut(s) 2135, 3712
FblI GTMKAC 1 cut(s) 4297
FriOI GRGCYC 7 cut(s) 39, 1440, 1783, 2424, 3101, 3953, 4752
GlaI GCGC 1 cut(s) 4915
GsuI CTGGAG 5 cut(s) 177, 319, 785, 2091, 3345
HaeII RGCGCY 1 cut(s) 4917
HapII CCGG 3 cut(s) 2450, 3801, 4746
HgaI GACGC 2 cut(s) 1052, 4120
HhaI GCGC 1 cut(s) 4916
Hin1I GRCGYC 1 cut(s) 4131
Hin6I GCGC 1 cut(s) 4914
HinP1I GCGC 1 cut(s) 4914
HincII GTYRAC 2 cut(s) 1159, 4204
HindII GTYRAC 2 cut(s) 1159, 4204
HindIII AAGCTT 3 cut(s) 961, 1637, 2348
HpaI GTTAAC 1 cut(s) 1159
HpaII CCGG 3 cut(s) 2450, 3801, 4746
Hpy99I CGWCG 1 cut(s) 3350
HpyCH4IV ACGT 8 cut(s) 1105, 2571, 2824, 3013, 3345, 4405, 4698, 4967
HpySE526I ACGT 8 cut(s) 1105, 2571, 2824, 3013, 3345, 4405, 4698, 4967
Hsp92I GRCGYC 1 cut(s) 4131
HspAI GCGC 1 cut(s) 4914
KpnI GGTACC 2 cut(s) 2457, 4078
KspAI GTTAAC 1 cut(s) 1159
LweI GCATC 8 cut(s) 293, 730, 929, 1687, 1798, 2906, 3999, 4819
MaeII ACGT 8 cut(s) 1105, 2571, 2824, 3013, 3345, 4405, 4698, 4967
MfeI CAATTG 2 cut(s) 1529, 2084
MlyI GAGTC 8 cut(s) 1018, 3218, 3742, 4178, 4184, 4527, 4775, 4913
MmeI TCCRAC 4 cut(s) 407, 1648, 3390, 4174
Mph1103I ATGCAT 2 cut(s) 2649, 3712
MroXI GAANNNNTTC 3 cut(s) 783, 2625, 2657
MslI CAYNNNNRTG 5 cut(s) 1451, 1659, 2795, 3830, 4542
MspA1I CMGCKG 1 cut(s) 1922
MspCI CTTAAG 1 cut(s) 3082
MspI CCGG 3 cut(s) 2450, 3801, 4746
MspR9I CCNGG 8 cut(s) 310, 1314, 1558, 1839, 2130, 2451, 2905, 4747
MunI CAATTG 2 cut(s) 1529, 2084
Mva1269I GAATGC 1 cut(s) 2329
MvaI CCWGG 6 cut(s) 310, 1314, 1558, 1839, 2130, 2905
MvnI CGCG 1 cut(s) 289
NciI CCSGG 2 cut(s) 2451, 4747
NdeI CATATG 2 cut(s) 2135, 3712
NheI GCTAGC 2 cut(s) 2269, 2638
NmeAIII GCCGAG 1 cut(s) 485
NmuCI GTSAC 5 cut(s) 1021, 2567, 3057, 3862, 4345
NsiI ATGCAT 2 cut(s) 2649, 3712
NspI RCATGY 3 cut(s) 458, 1375, 2800
NspV TTCGAA 1 cut(s) 1931
OliI CACNNNNGTG 1 cut(s) 1659
PaeR7I CTCGAG 1 cut(s) 129
PaqCI CACCTGC 1 cut(s) 1957
PceI AGGCCT 2 cut(s) 64, 2190
PciI ACATGT 2 cut(s) 1371, 2796
PcsI WCGNNNNNNNCGW 1 cut(s) 1437
PctI GAATGC 1 cut(s) 2329
PdmI GAANNNNTTC 3 cut(s) 783, 2625, 2657
PflMI CCANNNNNTGG 2 cut(s) 211, 1268
Ple19I CGATCG 1 cut(s) 988
PleI GAGTC 8 cut(s) 1018, 3218, 3741, 4177, 4183, 4527, 4774, 4912
PmaCI CACGTG 1 cut(s) 4968
PmlI CACGTG 1 cut(s) 4968
PpsI GAGTC 8 cut(s) 1018, 3218, 3741, 4177, 4183, 4527, 4774, 4912
Ppu21I YACGTR 2 cut(s) 3014, 4968
PpuMI RGGWCCY 1 cut(s) 3257
PscI ACATGT 2 cut(s) 1371, 2796
PshBI ATTAAT 3 cut(s) 2595, 3771, 4677
Psp124BI GAGCTC 5 cut(s) 39, 1440, 1783, 2424, 3101
Psp1406I AACGTT 1 cut(s) 4698
Psp5II RGGWCCY 1 cut(s) 3257
Psp6I CCWGG 6 cut(s) 308, 1312, 1556, 1837, 2128, 2903
PspCI CACGTG 1 cut(s) 4968
PspGI CCWGG 6 cut(s) 308, 1312, 1556, 1837, 2128, 2903
PspPI GGNCC 7 cut(s) 246, 1670, 2604, 3050, 3257, 4227, 4651
PspPPI RGGWCCY 1 cut(s) 3257
PstNI CAGNNNCTG 1 cut(s) 3617
PvuI CGATCG 1 cut(s) 988
PvuII CAGCTG 1 cut(s) 1922
RseI CAYNNNNRTG 5 cut(s) 1451, 1659, 2795, 3830, 4542
SacI GAGCTC 5 cut(s) 39, 1440, 1783, 2424, 3101
Sau96I GGNCC 7 cut(s) 246, 1670, 2604, 3050, 3257, 4227, 4651
ScaI AGTACT 1 cut(s) 4572
SchI GAGTC 8 cut(s) 1018, 3218, 3742, 4178, 4184, 4527, 4775, 4913
ScrFI CCNGG 8 cut(s) 310, 1314, 1558, 1839, 2130, 2451, 2905, 4747
SfaNI GCATC 8 cut(s) 293, 730, 929, 1687, 1798, 2906, 3999, 4819
SfcI CTRYAG 6 cut(s) 1293, 1347, 1758, 2995, 3930, 4125
Sfr274I CTCGAG 1 cut(s) 129
SfuI TTCGAA 1 cut(s) 1931
SinI GGWCC 6 cut(s) 246, 1670, 2604, 3050, 3257, 4651
SlaI CTCGAG 1 cut(s) 129
SmiMI CAYNNNNRTG 5 cut(s) 1451, 1659, 2795, 3830, 4542
SmlI CTYRAG 6 cut(s) 40, 129, 2119, 3082, 4642, 4909
SmoI CTYRAG 6 cut(s) 40, 129, 2119, 3082, 4642, 4909
SpeI ACTAGT 2 cut(s) 221, 4439
SseBI AGGCCT 2 cut(s) 64, 2190
SsiI CCGC 7 cut(s) 5, 86, 166, 449, 800, 2699, 3723
SspI AATATT 2 cut(s) 1228, 3671
SstI GAGCTC 5 cut(s) 39, 1440, 1783, 2424, 3101
StuI AGGCCT 2 cut(s) 64, 2190
StyD4I CCNGG 8 cut(s) 308, 1312, 1556, 1837, 2128, 2449, 2903, 4745
StyI CCWWGG 3 cut(s) 1710, 1806, 2600
TaiI ACGT 8 cut(s) 1108, 2574, 2827, 3016, 3348, 4408, 4701, 4970
TaqI TCGA 8 cut(s) 94, 130, 712, 1431, 1440, 1931, 2528, 3840
TaqII GACCGA 1 cut(s) 234
TatI WGTACW 2 cut(s) 4436, 4570
TauI GCSGC 2 cut(s) 7, 451
TscAI CASTG 8 cut(s) 256, 900, 1776, 1879, 2953, 3272, 3374, 4141
TseFI GTSAC 5 cut(s) 1021, 2567, 3057, 3862, 4345
Tsp45I GTSAC 5 cut(s) 1021, 2567, 3057, 3862, 4345
TspGWI ACGGA 3 cut(s) 396, 3439, 4130
TspRI CASTG 8 cut(s) 256, 900, 1776, 1879, 2953, 3272, 3374, 4141
Van91I CCANNNNNTGG 2 cut(s) 211, 1268
Vha464I CTTAAG 1 cut(s) 3082
VneI GTGCAC 2 cut(s) 4056, 4137
VpaK11BI GGWCC 6 cut(s) 246, 1670, 2604, 3050, 3257, 4651
VspI ATTAAT 3 cut(s) 2595, 3771, 4677
XagI CCTNNNNNAGG 1 cut(s) 4645
XbaI TCTAGA 3 cut(s) 389, 1091, 3101
XceI RCATGY 3 cut(s) 458, 1375, 2800
XcmI CCANNNNNNNNNTGG 4 cut(s) 760, 2814, 3916, 4237
XhoI CTCGAG 1 cut(s) 129
XmiI GTMKAC 1 cut(s) 4297
XmnI GAANNNNTTC 3 cut(s) 783, 2625, 2657
ZrmI AGTACT 1 cut(s) 4572
Zsp2I ATGCAT 2 cut(s) 2649, 3712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.