Rh1CG297800
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0005694
Physical Location & Seq
Forward (+)
57259466 .. 57267744
8279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG297800.1

Sequence Viewer

Length: 4920 bp
ATGTTTTCGGATGATTCTGGTCATGGATATGCATCTTCTCGGTCCAGCGAGAAGATGCTGGAGGATGAGAGCTTCCGGCCGTCGTTTTCACGTGGAGAGGGACGGTATGGCAGGAATGGTAGGGATAGTAGAGGGTCTTATAACCAGAGGGACAGTAAAGGACATTCTTGGGAAACCAGCAGTCTGTCTCCCAATACCCCCGGGAGGCCAAATGATATGAATAATGAACAAAGGCCTCAGGATGATAATATGACATACTCATCTAATCCGCATTCTGACTTTGGGAGCACATGGGATCAGATTCAGTTGAAAGACCACCTTGATAGGACGGGTGGTTCCATTGGTATAGCTGCTGGCCAGAAATGTGATAGAGAGAATTCCCTGGGCTCAATGGATTGGAGGCATCTTAAATGGTCACGGTCTGGCAGCATGTCTTCACGTGGTTCAGGTTTCAGCCACTCAAGTAGTTCGAAAAGCATTGGGGCCATAGATTCCAGTGAAGCAAAGACTGAGTCGCAGCCGAAAAATGCAACTCCGGTGCAGTCTCCTTCAGGGGATGCTACTGCCTGTGTGACATCTGCTGCACCATCAGAGGAGACGAATTCTAGGAAAAAGCCACGCCTTGGATGGGGTGAGGGACTGGCAAAGTATGAGAAAAAGAAAGTTGACCCGGCTGATGTTATCATGAACAAAGATGGGGCTGTTTGTCCTGTTGGTAATATGGAACCTGTCCAATCTTTCAGTTCACACTTGGCCGATAAAAGCCCCAGAGTTACGATGCTTTCGGATTGTGCATCTCCTGCAACTCCATCCTCTGTTGCTTGCAGTTCCTCTCCAGGTGTTGAAGAGAAACCATTTGGCAAGGCAGCCGGTGTTGATAATGATAGTAATTTATATCGTTCTCCTGGTCCTGAGCTTCAGAGTCATCAAGAGGGATTTTCGTTCAAATTAGAAAAGCTGGATTATAATTCCCTAGCTAATGTTACCTCATCATTACATGAATTGCTCCAGTCTGATGATCCAAGTCCCATGGATTCTAGTACAATGAGACCTACTGCAATGAACAAGTTGCTTACATGGAAAGGTGATATTTCAAAAGTATTGGAGGTGACTGAATCAGAAATTGATTATCTTGAAAACGAACTGAAGATATTGAACTCTGATTCTAGGGACAGCTGTGCAGCAGCTTCCAGTTCTTTGCCTGTTGAGGAGAGTGATAAATCTGGCAAAGAACACGCTACTGCCAAAAATTTGATCACCAGACCTGCTCCATTGCAAATTTTTTCTTCTGAGGATACAGATCCACAGAAGTTGGCCCTTGGTAATGGAGAACAGGGAGAGTCCTGTGGTGTTAAGGATCAAGATATGGATAGTCCTGGAACAGCAACGTCAAAATTTGTTGAACAGTTACCTTTGTTGAAGGTGGCTTCATCTGATATGGGGAATCCAAGTGGTTGTGCTGAGAACCAGGACCTAGTTCAAACGGCTGAAAGGGATGTAGAATGCTTAGTGGCTGGTAAAGATGAAGAAAAAAGTGACCTGTCTGCGCATGGAAATAGTAGAATGCTTTTAGTTAGTGAGATAATTACACCTGTTTCTGATGGTTTGGATCTTTGTGCTGGTGTAGTAGATACATTATGTGATTCTATATTTTCTTCCAATAAAGAATCTGCAAATAGAGCGTCTGACATATTTAATAAGCTGTTGCCCAAAGATAACTGTGAAGTTGATATTTTGGGACTTGGTATTTCCTCATCATGGAAGAATGATTCATTGATCAAAGAGAAGTTCAAAGCAAGGAAGCGGCGTTTAAGGTTTATGGAGAGAGTCATAACCTTAAAATATAAGGCCCATCAGCAATTGTGGAAGGAAGACGTCCGTTTGTTTTCAGAGCGAAAATATCGTCCAAAATCTCACAAAAAATGTGATTTAGGATTGCGGAACACCACCAATGGGAACCAGAAGCATCGCTCTTCCATTCGCTCCCGTTTTTCTACACCTGCAGGAAATTTGAGCCTGGTTCCTACTAAAGAGGTTGAGAAGTTTGCTAACAAGGTGCTCTGTGATTCCCAAGTCAAGCTTTATAGGAATTCATTGAAGATGCCAGCCTTAATTTTGGACAAGAAGGAGAAGATTGTGACAAGGTTTGTTTCTAGTAATGGCTTAGTTGAAGATCCCTGCGCTGTTGAGAAGGAAAGGGCTTTGATTAACCCTTGGACACCAGAAGAAAAAGAAGCTTTCATTGAAAAGTTGGTGGTCTTTGGGAAAGATTTTAAAAAGATCGCCTCTTTTTTCGACCACAAGACAACTGCTGACTGTGTTGAGTTCTATTACAAGCATCACAAATCTGCTGCTTTTCAGAAAGCAAAGAAGAAGCCTGATATCTCTAAACTAGGAAAGTCCTCTGCCAATACCTACATGATTAACCCTGGGACAAAATGGAATCGTGAGGTGAATGCTGCTTCCCTTGATATTCTTGGTGCTGCTTCTGTGATGGCAGCTCAGGCTGATGGCAGTACAAGAAACCGGACTGGGCGTTTAATTTTAGGAGGTTACAAGAATATGAAGATATCACAGAGTCACGATGTGACTGTTGAAAGGTCGTGCACTTTTGATGTTATTGGGAATGAGAGAGAAACAGCTGCTGCTGATGTTTTAGCAGGTATCTGTGGGTCTCTGTCTTCCGAGGCTGTCAGTTCTTGCATCACTAGTTCCATTGATCCTGGTGACGGTTGCCGGGAATGGAAGTGCCAGAAAGTTGATTCACTAGTAAGACGACCTTTGACACCTGATGTTATGCAAAGTGTTGATGATGAGACATGTTCAGATGAGAGTTGTGGTGAAATGGATCCTTCTGATTGGACAGATGAGGAGAAGTCTAGCTTTATACAGGCAGTGTCATCCCATGGTAAGGACTTTGCTATGATCTCACGATGTGTAAGAACGAGGTCCCAGAATCAATGCAAGGTTTTCTTTAGTAAGGCTCGGAAGTGCCTTGGGCTTGATTTGGTACATCCTCGGCGTGGAAATGAAGGAGCTTCTATTGTTGATGATGCTAATGGAGGTGGGAGTGATACTGAAGATGCCTGCGTTGTGGAAACTGGTTCTGGTATTTCCATTGATAAATCGGGTTGTGAAATGAATGAGGACTTGCCATTGTCTGTTATGGACATGGATCATGAAGACTCTGATCCTGAAGAGACCATTAATTTGAAATGTGATCCACTGGGATCAGTGGAAAACAATGTGAAGGGAGAAGTTGACCATCTAGATAACAAGGCTCTCAAATCTTCTGATGCACTCCAGATGGAAGATAGGCCTGTGGTAATTTTTGATGATGTCACCAACATCCATGATGTTGGTGACAGACTGTCCGAGTCGGTGCCTGCCCAGAGAAGTGAAGCATTTTCTGCTGATGCAGATGCTGTGAGAGATAATGTGGCTGAAAAGAGAAGTTTGGTTGCAGAGTCGCTCATTGGTGAGGGAATCAGCTCCGACCTACCTAAATTGGAGGGACAAGGTGAAAGATGCAATACAGATACAAGTGGATGTGGCTTACAAGTTTCAGCAAATGATTCTAATTCTAGTGGCAGTGCTTCTGACATGGCTGCTGAAGGTTCCTGTTCAGGTTTGGCTGCTGAGTGCCTGCATCGAGTGTCGGTTGAGCTGAATTCTATGCAAAAGTCGTCTGTCAATTCATTGTCACATGAGAATCTTCCTGCTACTGCAATTTCAGTGCCGGAAAATTCTGCTGTGGTTGAATATGGGAAAGCCATTAACCAAGATAGGTTGTCATCAACATCAGATCTGCAGGAGGGTAGAGATAAGCAGTCCTTATCTGTTGGTGGAGATGATTGTCACAAGCACTTGCCTGGTCTTCCAGTACTGACAAATATTGATCCAGCCCATGTTCTCAGGGGTTATCCATTGCACATGGCGACGAAGAAAGAGATCAATGGGCACATCAGTTCTGGTAACTTATCTGAAGTACAAAACCTTTCAAAGCCAGACGGGCCAAAAGATTGCCTTCTTCAGTTTGGTAACTGCAAACCCCGAAGTTCTCAGGATTTTCCACTTGTGCATCAAAAGATAGAGCGCCGAAGTGATAATACAAAAGCCCATTCATGGAGTTCATCAGATACGGATAAACCAAGCAGGAATGGTGATGTGAAACTGTTCGGTAAGATACTCACCAATACCTCCAAGTCCAGTTCCAGTATCCAGGAGAATGAAGAAAAGGGGTCCAATATCCATAATTTAAGCAACAAGTCATCTAACTTAAAATTCAGCGGGCATCATAACTTAGATGGAAACTCTGGCGTCCTGAAGTTTGATAGTAGTAATTATACTGGCCTTGAGAATGTTCCCAGGAGGAGTTACAGCTTTTGGGAAGGGAACAAAGTACAAAATGGATCTTTTCCTGATTCGGCCATCTTGCTTGCCAAGTACCCTGCAGCTTTTGGTAACTTTACTACATCCTCGTCCAAATTGGAACAGAAACCATTGCAGGCAGTTAGGAACAATGAGGGCCATGTAAATGGTGCATCAGTTTTTCCTTCAAGGGAAATTAGTAGCAGCAGCAGTAGTGGAATTGTTGATTATCATCAGGTGTTCAGTAGGCATCGTGATGGTGGTGCTAAAGTGCCACCATTTACAGTAGATGTGAAGCAGAGGCAAGACATATTTGATGTTTCAAGACGAAATGGGTTTGAATCAAGTTTACAGCAGCCAGGAAGGGGGATTGCCGGAATGAATGTGGTAGGGAGAGGGGGAATTATGGTAGGAGGGCCATGCACAGGTGTTTCAGATCCTGTGGCTGCCATAAGAATGCACTATGCGAAAACGGAACAGTATGGAGGGCAAGGGAGCATCATCAGGGAGGAGGAGTCGTGGAGAGGTAAGGGTGACATAGGGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000226 GO:0000228 GO:0000785 GO:0000790 GO:0000981 GO:0001067 GO:0001085 GO:0001102 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0003714 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005874 GO:0005876 GO:0006109 GO:0006110 GO:0006139 GO:0006140 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009966 GO:0009968 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0015630 GO:0016043 GO:0016070 GO:0016922 GO:0017053 GO:0018130 GO:0019216 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019899 GO:0022402 GO:0022607 GO:0023051 GO:0023057 GO:0030808 GO:0030811 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032368 GO:0032774 GO:0032872 GO:0032873 GO:0032879 GO:0032890 GO:0032991 GO:0033613 GO:0034641 GO:0034645 GO:0034654 GO:0035257 GO:0042325 GO:0042326 GO:0042826 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043408 GO:0043409 GO:0043467 GO:0043470 GO:0044070 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0045936 GO:0046328 GO:0046329 GO:0046483 GO:0046966 GO:0048511 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051172 GO:0051174 GO:0051193 GO:0051196 GO:0051225 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051427 GO:0060147 GO:0060149 GO:0060255 GO:0060964 GO:0060965 GO:0060966 GO:0060967 GO:0060968 GO:0060969 GO:0062012 GO:0065007 GO:0070013 GO:0070302 GO:0070303 GO:0070920 GO:0070925 GO:0071704 GO:0071840 GO:0072361 GO:0072362 GO:0072367 GO:0072368 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0097659 GO:0098679 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140110 GO:1900371 GO:1900402 GO:1900542 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:1903578 GO:1903798 GO:1903799 GO:1905952 GO:2000112 GO:2000113 GO:2000191 GO:2001141 GO:2001169
KEGG Pathways
Metabolic & Signaling
ko01522 ko04919 ko05202 map01522 map04919 map05202
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

1639

Amino Acids

178.08

Weight (kDa)

5.75

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 738 - 780 3.7e-08 Myb-like DNA-binding domain
DUF7952 PF25826 739 - 790 6e-06 Domain of unknown function (DUF7952)
Myb_DNA-binding PF00249 953 - 994 2.9e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 141, 966
AarI CACCTGC 1 cut(s) 2008
AatII GACGTC 1 cut(s) 1878
Acc16I TGCGCA 1 cut(s) 1548
Acc36I ACCTGC 3 cut(s) 1273, 2008, 2651
AccB1I GGYRCC 1 cut(s) 3382
AccB7I CCANNNNNTGG 1 cut(s) 623
AciI CCGC 4 cut(s) 269, 1804, 1939, 4290
AcoI YGGCCR 4 cut(s) 77, 355, 753, 4428
AcuI CTGAAG 9 cut(s) 534, 902, 1166, 3099, 3216, 3633, 4005, 4016, 4346
AcvI CACGTG 2 cut(s) 92, 440
AcyI GRCGYC 2 cut(s) 1875, 4320
AdeI CACNNNGTG 2 cut(s) 2587, 2936
AfaI GTAC 7 cut(s) 1042, 2518, 3012, 3885, 3990, 4404, 4448
AflIII ACRYGT 1 cut(s) 2819
AhdI GACNNNNNGTC 1 cut(s) 3370
AhlI ACTAGT 2 cut(s) 2708, 2767
AloI GAACNNNNNNTCC 2 cut(s) 319, 351
Alw21I GWGCWC 3 cut(s) 290, 2061, 2609
Alw26I GTCTC 7 cut(s) 192, 549, 590, 1042, 2679, 2810, 3194
Alw44I GTGCAC 1 cut(s) 2605
AlwNI CAGNNNCTG 3 cut(s) 2645, 3425, 4811
Ama87I CYCGRG 1 cut(s) 200
ApaLI GTGCAC 1 cut(s) 2605
ArsI GACNNNNNNTTYG 8 cut(s) 497, 529, 1667, 1699, 1888, 1920, 3193, 3225
AseI ATTAAT 1 cut(s) 3207
Asp700I GAANNNNTTC 1 cut(s) 4175
AspLEI GCGC 3 cut(s) 1549, 2183, 4098
AsuC2I CCSGG 4 cut(s) 201, 202, 671, 2738
AsuII TTCGAA 1 cut(s) 470
AvaI CYCGRG 1 cut(s) 200
AvaII GGWCC 5 cut(s) 42, 908, 1471, 2949, 4242
AxyI CCTNAGG 1 cut(s) 237
BaeGI GKGCMC 2 cut(s) 2609, 3963
BalI TGGCCA 1 cut(s) 357
BamHI GGATCC 1 cut(s) 2848
BanI GGYRCC 1 cut(s) 3382
BanII GRGCYC 1 cut(s) 389
BarI GAAGNNNNNNTAC 2 cut(s) 4093, 4125
BbrPI CACGTG 2 cut(s) 92, 440
BbsI GAAGAC 5 cut(s) 426, 1878, 2673, 3189, 3869
Bbv12I GWGCWC 3 cut(s) 290, 2061, 2609
BceAI ACGGC 2 cut(s) 64, 1500
BciVI GTATCC 2 cut(s) 1288, 4229
BclI TGATCA 2 cut(s) 1254, 1776
BcnI CCSGG 4 cut(s) 201, 202, 671, 2738
BcoDI GTCTC 7 cut(s) 192, 549, 590, 1042, 2679, 2810, 3194
BcuI ACTAGT 2 cut(s) 2708, 2767
BfmI CTRYAG 3 cut(s) 2001, 3809, 4452
BfoI RGCGCY 1 cut(s) 4099
BfuAI ACCTGC 3 cut(s) 1273, 2008, 2651
BfuI GTATCC 2 cut(s) 1288, 4229
BglI GCCNNNNNGGC 1 cut(s) 4012
BglII AGATCT 1 cut(s) 3805
BmcAI AGTACT 1 cut(s) 3885
Bme18I GGWCC 5 cut(s) 42, 908, 1471, 2949, 4242
BmeRI GACNNNNNGTC 1 cut(s) 3370
BmeT110I CYCGRG 1 cut(s) 200
BmrI ACTGGG 2 cut(s) 2541, 3236
BmuI ACTGGG 2 cut(s) 2541, 3236
BpiI GAAGAC 5 cut(s) 426, 1878, 2673, 3189, 3869
BpmI CTGGAG 4 cut(s) 80, 819, 992, 3287
Bpu10I CCTNAGC 2 cut(s) 912, 2502
Bpu14I TTCGAA 1 cut(s) 470
BpuEI CTTGAG 2 cut(s) 445, 4376
BpuMI CCSGG 4 cut(s) 201, 202, 671, 2738
BsaAI YACGTR 2 cut(s) 92, 440
BsaBI GATNNNNATC 3 cut(s) 31, 1299, 4602
BsaHI GRCGYC 2 cut(s) 1875, 4320
BsaI GGTCTC 3 cut(s) 1042, 2679, 3194
BsaWI WCCGGW 2 cut(s) 535, 2526
BsaXI ACNNNNNCTCC 4 cut(s) 4871, 4874, 4901, 4904
Bse118I RCCGGY 1 cut(s) 869
Bse21I CCTNAGG 1 cut(s) 237
Bse3DI GCAATG 4 cut(s) 1065, 1271, 3926, 4502
Bse8I GATNNNNATC 3 cut(s) 31, 1299, 4602
BseJI GATNNNNATC 3 cut(s) 31, 1299, 4602
BseMI GCAATG 4 cut(s) 1065, 1271, 3926, 4502
BseMII CTCAG 9 cut(s) 251, 501, 903, 1281, 1452, 2516, 3630, 3928, 4076
BseRI GAGGAG 6 cut(s) 608, 1223, 2885, 4387, 4895, 4898
BseSI GKGCMC 2 cut(s) 2609, 3963
BseX3I CGGCCG 1 cut(s) 77
BsgI GTGCAG 3 cut(s) 560, 567, 1200
Bsh1285I CGRYCG 1 cut(s) 80
BshNI GGYRCC 1 cut(s) 3382
BsiEI CGRYCG 1 cut(s) 80
BsiHKAI GWGCWC 3 cut(s) 290, 2061, 2609
BsiHKCI CYCGRG 1 cut(s) 200
BsiSI CCGG 9 cut(s) 76, 201, 536, 671, 870, 2527, 2737, 3740, 4746
BslFI GGGAC 9 cut(s) 114, 164, 651, 1011, 1184, 1752, 2446, 2935, 3528
BsmAI GTCTC 7 cut(s) 192, 549, 590, 1042, 2679, 2810, 3194
BsmBI CGTCTC 1 cut(s) 590
BsmFI GGGAC 9 cut(s) 114, 164, 651, 1011, 1184, 1752, 2446, 2935, 3528
BsmI GAATGC 5 cut(s) 271, 1508, 1569, 2461, 4833
Bso31I GGTCTC 3 cut(s) 1042, 2679, 3194
BsoBI CYCGRG 1 cut(s) 200
Bsp119I TTCGAA 1 cut(s) 470
Bsp1286I GDGCHC 5 cut(s) 290, 389, 2061, 2609, 3963
Bsp19I CCATGG 2 cut(s) 1029, 2905
BspACI CCGC 4 cut(s) 269, 1804, 1939, 4290
BspCNI CTCAG 9 cut(s) 250, 502, 904, 1282, 1453, 2515, 3631, 3927, 4075
BspHI TCATGA 2 cut(s) 684, 3178
BspMAI CTGCAG 3 cut(s) 2005, 3813, 4456
BspMI ACCTGC 3 cut(s) 1273, 2008, 2651
BspQI GCTCTTC 1 cut(s) 1978
BspT104I TTCGAA 1 cut(s) 470
BspT107I GGYRCC 1 cut(s) 3382
BspTNI GGTCTC 3 cut(s) 1042, 2679, 3194
BsrDI GCAATG 4 cut(s) 1065, 1271, 3926, 4502
BsrFI RCCGGY 1 cut(s) 869
BssAI RCCGGY 1 cut(s) 869
BssNI GRCGYC 2 cut(s) 1875, 4320
BssT1I CCWWGG 6 cut(s) 622, 1029, 1318, 2213, 2905, 2995
Bst6I CTCTTC 3 cut(s) 840, 1978, 3192
BstACI GRCGYC 2 cut(s) 1875, 4320
BstAPI GCANNNNNTGC 2 cut(s) 800, 3410
BstBAI YACGTR 2 cut(s) 92, 440
BstBI TTCGAA 1 cut(s) 470
BstC8I GCNNGC 9 cut(s) 355, 823, 2106, 3088, 3387, 3647, 4292, 4440, 4509
BstDSI CCRYGG 2 cut(s) 1029, 2905
BstH2I RGCGCY 1 cut(s) 4099
BstHHI GCGC 3 cut(s) 1549, 2183, 4098
BstMAI GTCTC 7 cut(s) 192, 549, 590, 1042, 2679, 2810, 3194
BstMCI CGRYCG 1 cut(s) 80
BstMWI GCNNNNNNNGC 5 cut(s) 800, 1679, 2504, 3410, 4012
BstNSI RCATGY 2 cut(s) 433, 2823
BstSFI CTRYAG 3 cut(s) 2001, 3809, 4452
BstSLI GKGCMC 2 cut(s) 2609, 3963
BstV2I GAAGAC 5 cut(s) 426, 1878, 2673, 3189, 3869
BstX2I RGATCY 7 cut(s) 1300, 1609, 2173, 2848, 3805, 4412, 4807
BstXI CCANNNNNNTGG 2 cut(s) 3359, 4538
BstYI RGATCY 7 cut(s) 1300, 1609, 2173, 2848, 3805, 4412, 4807
BstZI CGGCCG 1 cut(s) 77
Bsu36I CCTNAGG 1 cut(s) 237
BsuI GTATCC 2 cut(s) 1288, 4229
BtgI CCRYGG 2 cut(s) 1029, 2905
BtgZI GCGATG 1 cut(s) 1952
BtsI GCAGTG 2 cut(s) 2901, 3598
BtsIMutI CAGTG 6 cut(s) 502, 2901, 3224, 3240, 3598, 3741
BveI ACCTGC 3 cut(s) 1273, 2008, 2651
Cac8I GCNNGC 9 cut(s) 355, 823, 2106, 3088, 3387, 3647, 4292, 4440, 4509
CaiI CAGNNNCTG 3 cut(s) 2645, 3425, 4811
CciI TCATGA 2 cut(s) 684, 3178
CfoI GCGC 3 cut(s) 1549, 2183, 4098
Cfr10I RCCGGY 1 cut(s) 869
Cfr9I CCCGGG 1 cut(s) 200
CseI GACGC 2 cut(s) 1671, 4309
Csp6I GTAC 7 cut(s) 1041, 2517, 3011, 3884, 3989, 4403, 4447
CspCI CAANNNNNGTGG 2 cut(s) 1293, 1328
CviQI GTAC 7 cut(s) 1041, 2517, 3011, 3884, 3989, 4403, 4447
DraI TTTAAA 1 cut(s) 2275
DraIII CACNNNGTG 2 cut(s) 2587, 2936
DriI GACNNNNNGTC 1 cut(s) 3370
EaeI YGGCCR 4 cut(s) 77, 355, 753, 4428
EagI CGGCCG 1 cut(s) 77
Eam1104I CTCTTC 3 cut(s) 840, 1978, 3192
Eam1105I GACNNNNNGTC 1 cut(s) 3370
EarI CTCTTC 3 cut(s) 840, 1978, 3192
EclXI CGGCCG 1 cut(s) 77
Eco130I CCWWGG 6 cut(s) 622, 1029, 1318, 2213, 2905, 2995
Eco147I AGGCCT 2 cut(s) 235, 3319
Eco24I GRGCYC 1 cut(s) 389
Eco31I GGTCTC 3 cut(s) 1042, 2679, 3194
Eco32I GATATC 2 cut(s) 2383, 2571
Eco47I GGWCC 5 cut(s) 42, 908, 1471, 2949, 4242
Eco52I CGGCCG 1 cut(s) 77
Eco57I CTGAAG 9 cut(s) 534, 902, 1166, 3099, 3216, 3633, 4005, 4016, 4346
Eco72I CACGTG 2 cut(s) 92, 440
Eco81I CCTNAGG 1 cut(s) 237
Eco88I CYCGRG 1 cut(s) 200
EcoO109I RGGNCCY 2 cut(s) 1471, 2949
EcoRI GAATTC 4 cut(s) 376, 601, 2089, 3670
EcoRV GATATC 2 cut(s) 2383, 2571
EcoT14I CCWWGG 6 cut(s) 622, 1029, 1318, 2213, 2905, 2995
EcoT22I ATGCAT 1 cut(s) 34
EcoT38I GRGCYC 1 cut(s) 389
ErhI CCWWGG 6 cut(s) 622, 1029, 1318, 2213, 2905, 2995
Esp3I CGTCTC 1 cut(s) 590
FaqI GGGAC 9 cut(s) 114, 164, 651, 1011, 1184, 1752, 2446, 2935, 3528
FauI CCCGC 1 cut(s) 4283
FbaI TGATCA 2 cut(s) 1254, 1776
FriOI GRGCYC 1 cut(s) 389
FspI TGCGCA 1 cut(s) 1548
GlaI GCGC 3 cut(s) 1548, 2182, 4097
GsuI CTGGAG 4 cut(s) 80, 819, 992, 3287
HaeII RGCGCY 1 cut(s) 4099
HapII CCGG 9 cut(s) 76, 201, 536, 671, 870, 2527, 2737, 3740, 4746
HgaI GACGC 2 cut(s) 1671, 4309
HhaI GCGC 3 cut(s) 1549, 2183, 4098
Hin1I GRCGYC 2 cut(s) 1875, 4320
Hin6I GCGC 3 cut(s) 1547, 2181, 4096
HinP1I GCGC 3 cut(s) 1547, 2181, 4096
HincII GTYRAC 2 cut(s) 667, 3262
HindII GTYRAC 2 cut(s) 667, 3262
HindIII AAGCTT 2 cut(s) 2078, 2235
HpaII CCGG 9 cut(s) 76, 201, 536, 671, 870, 2527, 2737, 3740, 4746
Hpy166II GTNNAC 5 cut(s) 667, 746, 2607, 3262, 4721
Hpy8I GTNNAC 5 cut(s) 667, 746, 2607, 3262, 4721
Hpy99I CGWCG 2 cut(s) 85, 3943
HpyCH4IV ACGT 4 cut(s) 91, 439, 1388, 1875
HpyF10VI GCNNNNNNNGC 5 cut(s) 800, 1679, 2504, 3410, 4012
HpySE526I ACGT 4 cut(s) 91, 439, 1388, 1875
Hsp92I GRCGYC 2 cut(s) 1875, 4320
HspAI GCGC 3 cut(s) 1547, 2181, 4096
Ksp22I TGATCA 2 cut(s) 1254, 1776
LguI GCTCTTC 1 cut(s) 1978
LmnI GCTCC 7 cut(s) 285, 1011, 1273, 1988, 3035, 3497, 4866
MaeII ACGT 4 cut(s) 91, 439, 1388, 1875
MfeI CAATTG 1 cut(s) 1859
MflI RGATCY 7 cut(s) 1300, 1609, 2173, 2848, 3805, 4412, 4807
MhlI GDGCHC 5 cut(s) 290, 389, 2061, 2609, 3963
MlsI TGGCCA 1 cut(s) 357
MluNI TGGCCA 1 cut(s) 357
MlyI GAGTC 9 cut(s) 521, 931, 1349, 1836, 2587, 3179, 3386, 3476, 4895
MmeI TCCRAC 1 cut(s) 3519
Mox20I TGGCCA 1 cut(s) 357
Mph1103I ATGCAT 1 cut(s) 34
MroXI GAANNNNTTC 1 cut(s) 4175
MscI TGGCCA 1 cut(s) 357
MslI CAYNNNNRTG 4 cut(s) 27, 4536, 4626, 4826
Msp20I TGGCCA 1 cut(s) 357
MspA1I CMGCKG 3 cut(s) 1176, 2642, 4290
MspI CCGG 9 cut(s) 76, 201, 536, 671, 870, 2527, 2737, 3740, 4746
MunI CAATTG 1 cut(s) 1859
Mva1269I GAATGC 5 cut(s) 271, 1508, 1569, 2461, 4833
MwoI GCNNNNNNNGC 5 cut(s) 800, 1679, 2504, 3410, 4012
NciI CCSGG 4 cut(s) 201, 202, 671, 2738
NcoI CCATGG 2 cut(s) 1029, 2905
NmeAIII GCCGAG 1 cut(s) 2998
NsbI TGCGCA 1 cut(s) 1548
NsiI ATGCAT 1 cut(s) 34
NspI RCATGY 2 cut(s) 433, 2823
NspV TTCGAA 1 cut(s) 470
PagI TCATGA 2 cut(s) 684, 3178
PaqCI CACCTGC 1 cut(s) 2008
PasI CCCWGGG 2 cut(s) 382, 2429
PceI AGGCCT 2 cut(s) 235, 3319
PciI ACATGT 1 cut(s) 2819
PciSI GCTCTTC 1 cut(s) 1978
PctI GAATGC 5 cut(s) 271, 1508, 1569, 2461, 4833
PdmI GAANNNNTTC 1 cut(s) 4175
PflFI GACNNNGTC 1 cut(s) 511
PflMI CCANNNNNTGG 1 cut(s) 623
PfoI TCCNGGA 2 cut(s) 1375, 4221
PleI GAGTC 9 cut(s) 520, 930, 1348, 1835, 2586, 3179, 3385, 3475, 4894
PmaCI CACGTG 2 cut(s) 92, 440
PmlI CACGTG 2 cut(s) 92, 440
PpsI GAGTC 9 cut(s) 520, 930, 1348, 1835, 2586, 3179, 3385, 3475, 4894
Ppu21I YACGTR 2 cut(s) 92, 440
PpuMI RGGWCCY 2 cut(s) 1471, 2949
PscI ACATGT 1 cut(s) 2819
PshBI ATTAAT 1 cut(s) 3207
PsiI TTATAA 2 cut(s) 141, 966
Psp5II RGGWCCY 2 cut(s) 1471, 2949
PspCI CACGTG 2 cut(s) 92, 440
PspPPI RGGWCCY 2 cut(s) 1471, 2949
PstI CTGCAG 3 cut(s) 2005, 3813, 4456
PstNI CAGNNNCTG 3 cut(s) 2645, 3425, 4811
PsuI RGATCY 7 cut(s) 1300, 1609, 2173, 2848, 3805, 4412, 4807
PsyI GACNNNGTC 1 cut(s) 511
PvuII CAGCTG 2 cut(s) 1176, 2642
RsaI GTAC 7 cut(s) 1042, 2518, 3012, 3885, 3990, 4404, 4448
RsaNI GTAC 7 cut(s) 1041, 2517, 3011, 3884, 3989, 4403, 4447
RseI CAYNNNNRTG 4 cut(s) 27, 4536, 4626, 4826
SapI GCTCTTC 1 cut(s) 1978
SbfI CCTGCAGG 1 cut(s) 2005
ScaI AGTACT 1 cut(s) 3885
SchI GAGTC 9 cut(s) 521, 931, 1349, 1836, 2587, 3179, 3386, 3476, 4895
SdaI CCTGCAGG 1 cut(s) 2005
SduI GDGCHC 5 cut(s) 290, 389, 2061, 2609, 3963
SfcI CTRYAG 3 cut(s) 2001, 3809, 4452
SfuI TTCGAA 1 cut(s) 470
SinI GGWCC 5 cut(s) 42, 908, 1471, 2949, 4242
SmaI CCCGGG 1 cut(s) 202
SmiMI CAYNNNNRTG 4 cut(s) 27, 4536, 4626, 4826
SmlI CTYRAG 2 cut(s) 460, 4355
SmoI CTYRAG 2 cut(s) 460, 4355
SpeI ACTAGT 2 cut(s) 2708, 2767
Sse8387I CCTGCAGG 1 cut(s) 2005
SseBI AGGCCT 2 cut(s) 235, 3319
SsiI CCGC 4 cut(s) 269, 1804, 1939, 4290
SspI AATATT 1 cut(s) 3895
StuI AGGCCT 2 cut(s) 235, 3319
StyI CCWWGG 6 cut(s) 622, 1029, 1318, 2213, 2905, 2995
TaiI ACGT 4 cut(s) 94, 442, 1391, 1878
TaqI TCGA 3 cut(s) 470, 2295, 3652
TaqII GACCGA 1 cut(s) 30
TatI WGTACW 5 cut(s) 1040, 2516, 3883, 3988, 4402
TauI GCSGC 1 cut(s) 1807
TscAI CASTG 6 cut(s) 502, 2901, 3231, 3240, 3598, 3741
TspGWI ACGGA 3 cut(s) 1868, 4157, 4859
TspMI CCCGGG 1 cut(s) 200
TspRI CASTG 6 cut(s) 502, 2901, 3231, 3240, 3598, 3741
Tth111I GACNNNGTC 1 cut(s) 511
Van91I CCANNNNNTGG 1 cut(s) 623
VneI GTGCAC 1 cut(s) 2605
VpaK11BI GGWCC 5 cut(s) 42, 908, 1471, 2949, 4242
VspI ATTAAT 1 cut(s) 3207
XbaI TCTAGA 1 cut(s) 3268
XceI RCATGY 2 cut(s) 433, 2823
XcmI CCANNNNNNNNNTGG 1 cut(s) 624
XmaI CCCGGG 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 4175
ZraI GACGTC 1 cut(s) 1876
ZrmI AGTACT 1 cut(s) 3885
Zsp2I ATGCAT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.