Rmu_sc0002483.1_g000001
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002483.1
OG0005694
Physical Location & Seq
Forward (+)
4493 .. 14556
10064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002483.1_g000001.1.cds

Sequence Viewer

Length: 5295 bp
atgggaaacaagggttcaggttctatagcagaagatatgagaaaggacttgacgttggtttggagatattacaagaagctagggaaggttcgaaattgccttgttattcctggaggttttgataagttatcccttgcttgcttcattgccttcctggtgttaggggagggtgtggctgcccatgcaattgggttggttttgatgccgccagaaccattgtcgtgggatcggaaggagttcttgaaggagaggaagcacgagaggtcggagtcgctggggccggtggcgcgatggagggactcgcctcatcacgcgccgagggagttcaacaaccgctggcagtccgccgagtttcgcagaccgccaggtcatggtaaacagggtggttggcacatgttttcggatgattctggtcatggatatgcatcttctcggtccagcgagaagatgctggaggatgagagcttccggccgtcgttttcacgtggagagggacggtatggcaggaatggtagggatagtagagggtcttataaccagagggactgtaaaggacattcttgggaaaccagcagtctgtctcccaatacccccgggaggccaaatgatatgaataatgaacaaaggcctcaggatgataatatgacatactcatctaatccgcattctgactttgggagcacatgggatcagattcagttgaaagaccaccttgataggacgggtggttccaatggtgtagctgctggccagaaatgtgatagagagaattccctgggctcaatggattggaggcatcttaaatggtcacggtctggcagcatgtcttcacgtggttcaggtttcagccactcaagtagttcgaaaagcattggggccatagattccagtgaagcaaagactgagtcgcagccgaaaaatgcaactccggtgcagtctccttcaggggatgctactgcctgtgtgacatctgctgcaccatcagaggagacgaattctaggaaaaagccacgccttggatggggtgagggactggcaaagtatgagaaaaagaaagttgacccggctgatgttatcatgaacaaagatggggctgtctgtcctgttggtaatatggaattcagttcacacttggccgataaaagccccagagttacgatgctttcggattgtgcatctcctgcaactccatcctctgttgcttgcagttcctctccaggtgttgaagagaaaccatttggcaaggcagccggtgttgataatgatagtaatttatatcgttctcctggtcctgagcttcagagtcatcaagagggattttcgttcaaattagaaaagctggattataattccctagctaatgttacctcatcattacatgaattgctccagtctgatgatccaagtcccatggattctagtacaatgagacctactgcaatgaacaagttgcttatatggaaaggtgatatttcaaaagtattggaggtgactgaatcagaaattgattttcttgaaaacgaactgaagatgttgaactctgattctaaggacagctgtgcagcagcttccagttctttgcctgttgaggagagtgacaaatctggcaaagaacacgctactgccaaaaatttgatcaccagacctgctccattgcaaattttttcttctgaggatacagatccacagaagttggcccttggtaatggagaacagggagagtcctgtggtgttaaggatcaagatatggatagtcctggaacagcaacgtcaaaatttgttgaacagttacctttgttgaaggtggcttcatctgatatggggaatccaactggttgtgctgagaaccaggacctagttcaaacggctgaaagggatgtagaatgcttagtggctggtaaagatgaagaaaaaagtgacctgtctgcgcatggaaatagtagaatgcttttagttagtgagatagttacacctgtttctgatggtttggatctttgtgctggtgtagtagatacattatgtgattctatattttcttccaataaagaatctgcaaatagagcgtctgacatatttaataagctgttgcccaaagataactgtgaagttgatatttcgggacttggtatttcctcatcatggaagaatgattcattgatcaaagagaagttcaaagcaaggaagcggcgtttaaggtttatggagagagtcataaccttaaaatataaggcccatcagcaattgtggaaggaagacgtccgtttgttttcagagcgaaaatatcgtccaaaatctcacaaaaaatgtgatttaggattgcggaacaccaccaatgggaaccagaagcatcgctcttccattcgctcccgtttttctacacctgcaggaaatttgagcctggttcctactaaagaggttgagaagtttgctaacaaggtgctctgtgattcccaagtcaagctttataggaattcattgaagatgccagccttaattttggacaagaaggagaagattgtgacaaggtttgtttctagtaatggcttagttgaagatccctgcgctgttgagaaggaaagggctttgattaacccttggacaccagaagaaaaagaagctttcattgaaaagttggtggtctttgggaaagattttaaaaagatcgcctcttttttcgaccacaagacaactgctgactgtgttgagttctattacaagcatcacaaatctgctgcttttcagaaagcaaagaagaagcctgatatctctaaactaggaaagtcctctgccaatacctacatgattaaccctgggacaaaatggaatcgtgaggtgaatgctgcttcccttgatattcttggtgctgcttctgtgatggcagctcaggctgatggcagtacaagaaaccggactgggcgtttaattttaggaggttacaagaatatgaagatatcacagagtgacgatgtgactgttgaaaggtcgtgcacttttgatgttattgggaatgagagagaaacagctgctgctgatgttttagcaggtatctgtgggtctctgtcttccgaggctgtcagttcttgcatcactagttccattgatcctggtgacggttgccgggaatggaagtgccagaaagttgattcactagtaagacgacctttgacacctgatgttatgcaaagtgttgatgatgagacatgttcagatgagagttgtggtgaaatggatccttctgattggacagatgaggagaagtctagctttatacaggcagtgtcatcccatggtaaggactttgctatgatctcacgatgtgtaagaacgaggtcccagaatcaatgcaaggttttcttcagtaaggctcggaagtgccttgggcttgatttggtacatcctcggcgtggcaatgaaggagcttctattgttgatgatgctaatggcggtgggagtgatactgaagatgcctgcgttgtggaaactggttctggtatttccattgataaatcgggttgtgaaatgaatgaggacttgccgttgtctgttatggacatggatcatgaagactctgatcctgaagagaccattaatttgaaatgtgatccactgggatcagtggaaaacaatgtgaagggagaagttgaccatctagataacaaggctctcaaatcttctgatgcactccagatggaagataggcctgaggtagtttttgatgatgtcaccaacatccatgatgttggtgacagactgtccgagtcggtgcctgcccagagaagtgaagcattttctgctgatgcagatgctgtgagagataatgtggctgaaaagagaagtttggttgcagagtcgctcattggtgagggaatcagctctgacctacctaaattggagggacaaggtgaaagatgcaatacagatacaagtggatgtggcttacaagtttcagcgaatgattctaattctagtggcagtgcttctgatatggctgctgaaggttcctgttcaggtttggctgctgagtgcctgcatcgagtgtcggttgagctgaattctatgcaaaagtcgtctgtcaattcattgtcacatgagaatcttcttgctactgcaatttcagtgccggaaaattctgctgtggttgaatatgggaaagccattaaccaagataggttgtcatcaacatcagatctgcaggagggtagagataagcagtccttatctgttggtggagatgattgtcacaagcacttgcctggtcttccagtactgacaaatattgatccagcccatgttctcaggggttatccattgcacatggcgacgaagaaagagatcaatgggcacatcagttctggtaacttatctgaagtacgaaacctttcaaagccagacgggccaaaagattgccttcttcagtttggtaactgcaaaccccgaagttctcaggattttccacttgtgcatcaaaagatagagcgccgaactgatactacaaaagcccattcatggagttcatcagatacggataaaccgagcaggaatggtgatgtgaaactgttcggtaagatactcaccaatacctccaagtccagttccagtatccaggagaatgaagaaaacaatatccataatttaagcaacaagtcatctaacttaaaattcagcgggcatcataacttagatggaaactctggcgtcctgaagtttgatggtagtaattatgctggccttgagaatgttcccaggaggagttacagcttttgggaagggaacaaagtacaaaatggatcttttcctgattcggccatcttgcttgccaagtaccctgcagcttttggtaactttactacatcctcgtccaaattggaacaaaaaccattgcaggcagttaggaacaatgagggccatgtaaatggtgcatcagtttttccttcaagggaaattagtagcagcagcagtagtggaattgttgattatcatcaggtgttcagtaggcatcgtgatggtggtgctaaagtgccaccatttacagtagatgtgaagcagaggcaagacatgtttgatgtttcaagacgaaatgggtttgaatcaagtttacagcagcaaggaagggggattgccggaatgaatgtggtagggagagggggaattatggtaggagggccatgcacaggtgtttcagatcctgtggctgccataagaatgcactatgcgaaaacggaacagtatggagggcaggggagcatcatcagggaggaggagtcgtggagaggtaagggtgacatagggaggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000226 GO:0000228 GO:0000785 GO:0000790 GO:0000981 GO:0001067 GO:0001085 GO:0001102 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0003714 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005874 GO:0005876 GO:0006109 GO:0006110 GO:0006139 GO:0006140 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009966 GO:0009968 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0015630 GO:0016043 GO:0016070 GO:0016922 GO:0017053 GO:0018130 GO:0019216 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019899 GO:0022402 GO:0022607 GO:0023051 GO:0023057 GO:0030808 GO:0030811 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032368 GO:0032774 GO:0032872 GO:0032873 GO:0032879 GO:0032890 GO:0032991 GO:0033613 GO:0034641 GO:0034645 GO:0034654 GO:0035257 GO:0042325 GO:0042326 GO:0042826 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043408 GO:0043409 GO:0043467 GO:0043470 GO:0044070 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0045936 GO:0046328 GO:0046329 GO:0046483 GO:0046966 GO:0048511 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051172 GO:0051174 GO:0051193 GO:0051196 GO:0051225 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051427 GO:0060147 GO:0060149 GO:0060255 GO:0060964 GO:0060965 GO:0060966 GO:0060967 GO:0060968 GO:0060969 GO:0062012 GO:0065007 GO:0070013 GO:0070302 GO:0070303 GO:0070920 GO:0070925 GO:0071704 GO:0071840 GO:0072361 GO:0072362 GO:0072367 GO:0072368 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0097659 GO:0098679 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140110 GO:1900371 GO:1900402 GO:1900542 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:1903578 GO:1903798 GO:1903799 GO:1905952 GO:2000112 GO:2000113 GO:2000191 GO:2001141 GO:2001169
KEGG Pathways
Metabolic & Signaling
ko01522 ko04919 ko05202 map01522 map04919 map05202
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

1764

Amino Acids

192.4

Weight (kDa)

6.0

Isoelectric Point (pI)

47.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 534, 1347
AarI CACCTGC 1 cut(s) 2389
AasI GACNNNNNNGTC 1 cut(s) 366
AatII GACGTC 1 cut(s) 2259
Acc16I TGCGCA 1 cut(s) 1929
Acc36I ACCTGC 3 cut(s) 1654, 2389, 3032
AccB1I GGYRCC 1 cut(s) 3763
AccB7I CCANNNNNTGG 2 cut(s) 371, 1016
AccII CGCG 2 cut(s) 289, 314
AciI CCGC 9 cut(s) 206, 334, 345, 362, 662, 2185, 2320, 3444, 4665
AcoI YGGCCR 4 cut(s) 470, 748, 1134, 4803
AcvI CACGTG 2 cut(s) 485, 833
AcyI GRCGYC 2 cut(s) 2256, 4695
AdeI CACNNNGTG 2 cut(s) 2960, 3317
AfaI GTAC 7 cut(s) 1423, 2899, 3393, 4266, 4371, 4779, 4823
AflIII ACRYGT 3 cut(s) 393, 3200, 5055
AhdI GACNNNNNGTC 1 cut(s) 3751
AhlI ACTAGT 2 cut(s) 3089, 3148
AloI GAACNNNNNNTCC 2 cut(s) 712, 744
Alw21I GWGCWC 3 cut(s) 683, 2442, 2990
Alw26I GTCTC 7 cut(s) 585, 942, 983, 1423, 3060, 3191, 3575
Alw44I GTGCAC 1 cut(s) 2986
AlwNI CAGNNNCTG 3 cut(s) 3026, 3806, 5186
Ama87I CYCGRG 1 cut(s) 593
ApaLI GTGCAC 1 cut(s) 2986
ArsI GACNNNNNNTTYG 8 cut(s) 890, 922, 2048, 2080, 2269, 2301, 3574, 3606
AseI ATTAAT 1 cut(s) 3588
Asp700I GAANNNNTTC 3 cut(s) 236, 4378, 4556
AspLEI GCGC 5 cut(s) 289, 316, 1930, 2564, 4479
AsuC2I CCSGG 4 cut(s) 594, 595, 1064, 3119
AsuII TTCGAA 2 cut(s) 91, 863
AvaI CYCGRG 1 cut(s) 593
AvaII GGWCC 4 cut(s) 435, 1289, 1852, 3330
AxyI CCTNAGG 2 cut(s) 630, 3702
BaeGI GKGCMC 2 cut(s) 2990, 4344
BalI TGGCCA 1 cut(s) 750
BamHI GGATCC 1 cut(s) 3229
BanI GGYRCC 1 cut(s) 3763
BanII GRGCYC 1 cut(s) 782
BauI CACGAG 1 cut(s) 257
BbrPI CACGTG 2 cut(s) 485, 833
BbsI GAAGAC 5 cut(s) 819, 2259, 3054, 3570, 4250
Bbv12I GWGCWC 3 cut(s) 683, 2442, 2990
BceAI ACGGC 3 cut(s) 457, 1881, 3520
BciVI GTATCC 2 cut(s) 1669, 4610
BclI TGATCA 2 cut(s) 1635, 2157
BcnI CCSGG 4 cut(s) 594, 595, 1064, 3119
BcoDI GTCTC 7 cut(s) 585, 942, 983, 1423, 3060, 3191, 3575
BcuI ACTAGT 2 cut(s) 3089, 3148
BfmI CTRYAG 4 cut(s) 24, 2382, 4190, 4827
BfoI RGCGCY 1 cut(s) 4480
BfuAI ACCTGC 3 cut(s) 1654, 2389, 3032
BfuI GTATCC 2 cut(s) 1669, 4610
BglI GCCNNNNNGGC 1 cut(s) 4393
BglII AGATCT 1 cut(s) 4186
BmcAI AGTACT 1 cut(s) 4266
Bme18I GGWCC 4 cut(s) 435, 1289, 1852, 3330
BmeRI GACNNNNNGTC 1 cut(s) 3751
BmeT110I CYCGRG 1 cut(s) 593
BmiI GGNNCC 9 cut(s) 279, 730, 877, 2339, 2403, 3231, 3332, 3765, 4000
BmrI ACTGGG 2 cut(s) 2922, 3617
BmuI ACTGGG 2 cut(s) 2922, 3617
BpiI GAAGAC 5 cut(s) 819, 2259, 3054, 3570, 4250
BpmI CTGGAG 5 cut(s) 132, 473, 1200, 1373, 3668
Bpu10I CCTNAGC 2 cut(s) 1293, 2883
Bpu14I TTCGAA 2 cut(s) 91, 863
BpuEI CTTGAG 2 cut(s) 838, 4751
BpuMI CCSGG 4 cut(s) 594, 595, 1064, 3119
BsaAI YACGTR 2 cut(s) 485, 833
BsaBI GATNNNNATC 3 cut(s) 424, 1680, 4977
BsaHI GRCGYC 2 cut(s) 2256, 4695
BsaI GGTCTC 3 cut(s) 1423, 3060, 3575
BsaWI WCCGGW 2 cut(s) 928, 2907
BsaXI ACNNNNNCTCC 4 cut(s) 5246, 5249, 5276, 5279
Bse118I RCCGGY 2 cut(s) 280, 1250
Bse21I CCTNAGG 2 cut(s) 630, 3702
Bse3DI GCAATG 6 cut(s) 144, 1446, 1652, 3415, 4307, 4877
Bse8I GATNNNNATC 3 cut(s) 424, 1680, 4977
BseJI GATNNNNATC 3 cut(s) 424, 1680, 4977
BseMI GCAATG 6 cut(s) 144, 1446, 1652, 3415, 4307, 4877
BseRI GAGGAG 6 cut(s) 1001, 1604, 3266, 4762, 5270, 5273
BseSI GKGCMC 2 cut(s) 2990, 4344
BseX3I CGGCCG 1 cut(s) 470
BseYI CCCAGC 1 cut(s) 274
BsgI GTGCAG 3 cut(s) 953, 960, 1581
Bsh1236I CGCG 2 cut(s) 289, 314
Bsh1285I CGRYCG 1 cut(s) 473
BshNI GGYRCC 1 cut(s) 3763
BsiEI CGRYCG 1 cut(s) 473
BsiHKAI GWGCWC 3 cut(s) 683, 2442, 2990
BsiHKCI CYCGRG 1 cut(s) 593
BslFI GGGAC 9 cut(s) 311, 507, 557, 1044, 1392, 2133, 2827, 3316, 3909
BsmAI GTCTC 7 cut(s) 585, 942, 983, 1423, 3060, 3191, 3575
BsmBI CGTCTC 1 cut(s) 983
BsmFI GGGAC 9 cut(s) 311, 507, 557, 1044, 1392, 2133, 2827, 3316, 3909
BsmI GAATGC 5 cut(s) 664, 1889, 1950, 2842, 5208
Bso31I GGTCTC 3 cut(s) 1423, 3060, 3575
BsoBI CYCGRG 1 cut(s) 593
Bsp119I TTCGAA 2 cut(s) 91, 863
Bsp1286I GDGCHC 5 cut(s) 683, 782, 2442, 2990, 4344
Bsp19I CCATGG 2 cut(s) 1410, 3286
BspACI CCGC 9 cut(s) 206, 334, 345, 362, 662, 2185, 2320, 3444, 4665
BspFNI CGCG 2 cut(s) 289, 314
BspHI TCATGA 2 cut(s) 1077, 3559
BspLI GGNNCC 9 cut(s) 279, 730, 877, 2339, 2403, 3231, 3332, 3765, 4000
BspMAI CTGCAG 3 cut(s) 2386, 4194, 4831
BspMI ACCTGC 3 cut(s) 1654, 2389, 3032
BspQI GCTCTTC 1 cut(s) 2359
BspT104I TTCGAA 2 cut(s) 91, 863
BspT107I GGYRCC 1 cut(s) 3763
BspTNI GGTCTC 3 cut(s) 1423, 3060, 3575
BsrDI GCAATG 6 cut(s) 144, 1446, 1652, 3415, 4307, 4877
BsrFI RCCGGY 2 cut(s) 280, 1250
BssAI RCCGGY 2 cut(s) 280, 1250
BssNI GRCGYC 2 cut(s) 2256, 4695
BssSI CACGAG 1 cut(s) 257
BssT1I CCWWGG 6 cut(s) 1015, 1410, 1699, 2594, 3286, 3376
Bst2BI CACGAG 1 cut(s) 257
Bst6I CTCTTC 3 cut(s) 1221, 2359, 3573
BstACI GRCGYC 2 cut(s) 2256, 4695
BstAPI GCANNNNNTGC 2 cut(s) 1181, 3791
BstBAI YACGTR 2 cut(s) 485, 833
BstBI TTCGAA 2 cut(s) 91, 863
BstDSI CCRYGG 2 cut(s) 1410, 3286
BstFNI CGCG 2 cut(s) 289, 314
BstH2I RGCGCY 1 cut(s) 4480
BstHHI GCGC 5 cut(s) 289, 316, 1930, 2564, 4479
BstMAI GTCTC 7 cut(s) 585, 942, 983, 1423, 3060, 3191, 3575
BstMCI CGRYCG 1 cut(s) 473
BstMWI GCNNNNNNNGC 7 cut(s) 182, 286, 1181, 2060, 2885, 3791, 4393
BstNSI RCATGY 4 cut(s) 397, 826, 3204, 5059
BstSFI CTRYAG 4 cut(s) 24, 2382, 4190, 4827
BstSLI GKGCMC 2 cut(s) 2990, 4344
BstUI CGCG 2 cut(s) 289, 314
BstV2I GAAGAC 5 cut(s) 819, 2259, 3054, 3570, 4250
BstX2I RGATCY 7 cut(s) 1681, 1990, 2554, 3229, 4186, 4787, 5182
BstXI CCANNNNNNTGG 4 cut(s) 188, 222, 3740, 4913
BstYI RGATCY 7 cut(s) 1681, 1990, 2554, 3229, 4186, 4787, 5182
BstZI CGGCCG 1 cut(s) 470
Bsu36I CCTNAGG 2 cut(s) 630, 3702
BsuI GTATCC 2 cut(s) 1669, 4610
BtgI CCRYGG 2 cut(s) 1410, 3286
BtgZI GCGATG 2 cut(s) 304, 2333
BtsI GCAGTG 2 cut(s) 3282, 3979
BtsIMutI CAGTG 6 cut(s) 895, 3282, 3605, 3621, 3979, 4122
BveI ACCTGC 3 cut(s) 1654, 2389, 3032
CaiI CAGNNNCTG 3 cut(s) 3026, 3806, 5186
CciI TCATGA 2 cut(s) 1077, 3559
CfoI GCGC 5 cut(s) 289, 316, 1930, 2564, 4479
Cfr10I RCCGGY 2 cut(s) 280, 1250
Cfr9I CCCGGG 1 cut(s) 593
CseI GACGC 2 cut(s) 2052, 4684
Csp6I GTAC 7 cut(s) 1422, 2898, 3392, 4265, 4370, 4778, 4822
CspCI CAANNNNNGTGG 2 cut(s) 1674, 1709
CviQI GTAC 7 cut(s) 1422, 2898, 3392, 4265, 4370, 4778, 4822
DraI TTTAAA 1 cut(s) 2656
DraIII CACNNNGTG 2 cut(s) 2960, 3317
DrdI GACNNNNNNGTC 1 cut(s) 366
DriI GACNNNNNGTC 1 cut(s) 3751
DseDI GACNNNNNNGTC 1 cut(s) 366
EaeI YGGCCR 4 cut(s) 470, 748, 1134, 4803
EagI CGGCCG 1 cut(s) 470
Eam1104I CTCTTC 3 cut(s) 1221, 2359, 3573
Eam1105I GACNNNNNGTC 1 cut(s) 3751
EarI CTCTTC 3 cut(s) 1221, 2359, 3573
EciI GGCGGA 1 cut(s) 334
EclXI CGGCCG 1 cut(s) 470
Eco130I CCWWGG 6 cut(s) 1015, 1410, 1699, 2594, 3286, 3376
Eco147I AGGCCT 2 cut(s) 628, 3700
Eco24I GRGCYC 1 cut(s) 782
Eco31I GGTCTC 3 cut(s) 1423, 3060, 3575
Eco32I GATATC 2 cut(s) 2764, 2952
Eco47I GGWCC 4 cut(s) 435, 1289, 1852, 3330
Eco52I CGGCCG 1 cut(s) 470
Eco72I CACGTG 2 cut(s) 485, 833
Eco81I CCTNAGG 2 cut(s) 630, 3702
Eco88I CYCGRG 1 cut(s) 593
EcoO109I RGGNCCY 2 cut(s) 1852, 3330
EcoRI GAATTC 5 cut(s) 769, 994, 1118, 2470, 4051
EcoRV GATATC 2 cut(s) 2764, 2952
EcoT14I CCWWGG 6 cut(s) 1015, 1410, 1699, 2594, 3286, 3376
EcoT22I ATGCAT 1 cut(s) 427
EcoT38I GRGCYC 1 cut(s) 782
ErhI CCWWGG 6 cut(s) 1015, 1410, 1699, 2594, 3286, 3376
Esp3I CGTCTC 1 cut(s) 983
FaqI GGGAC 9 cut(s) 311, 507, 557, 1044, 1392, 2133, 2827, 3316, 3909
FauI CCCGC 1 cut(s) 4658
FbaI TGATCA 2 cut(s) 1635, 2157
FriOI GRGCYC 1 cut(s) 782
FspI TGCGCA 1 cut(s) 1929
GlaI GCGC 5 cut(s) 288, 315, 1929, 2563, 4478
GsaI CCCAGC 1 cut(s) 278
GsuI CTGGAG 5 cut(s) 132, 473, 1200, 1373, 3668
HaeII RGCGCY 1 cut(s) 4480
HgaI GACGC 2 cut(s) 2052, 4684
HhaI GCGC 5 cut(s) 289, 316, 1930, 2564, 4479
Hin1I GRCGYC 2 cut(s) 2256, 4695
Hin6I GCGC 5 cut(s) 287, 314, 1928, 2562, 4477
HinP1I GCGC 5 cut(s) 287, 314, 1928, 2562, 4477
HincII GTYRAC 2 cut(s) 1060, 3643
HindII GTYRAC 2 cut(s) 1060, 3643
HindIII AAGCTT 2 cut(s) 2459, 2616
Hpy166II GTNNAC 6 cut(s) 377, 1060, 1127, 2988, 3643, 5096
Hpy8I GTNNAC 6 cut(s) 377, 1060, 1127, 2988, 3643, 5096
Hpy99I CGWCG 2 cut(s) 478, 4324
HpyCH4IV ACGT 5 cut(s) 53, 484, 832, 1769, 2256
HpyF10VI GCNNNNNNNGC 7 cut(s) 182, 286, 1181, 2060, 2885, 3791, 4393
HpySE526I ACGT 5 cut(s) 53, 484, 832, 1769, 2256
Hsp92I GRCGYC 2 cut(s) 2256, 4695
HspAI GCGC 5 cut(s) 287, 314, 1928, 2562, 4477
Ksp22I TGATCA 2 cut(s) 1635, 2157
LguI GCTCTTC 1 cut(s) 2359
LmnI GCTCC 6 cut(s) 678, 1392, 1654, 2369, 3416, 5241
MaeII ACGT 5 cut(s) 53, 484, 832, 1769, 2256
MfeI CAATTG 2 cut(s) 186, 2240
MflI RGATCY 7 cut(s) 1681, 1990, 2554, 3229, 4186, 4787, 5182
MhlI GDGCHC 5 cut(s) 683, 782, 2442, 2990, 4344
MlsI TGGCCA 1 cut(s) 750
MluNI TGGCCA 1 cut(s) 750
MmeI TCCRAC 2 cut(s) 246, 1853
Mox20I TGGCCA 1 cut(s) 750
Mph1103I ATGCAT 1 cut(s) 427
MroXI GAANNNNTTC 3 cut(s) 236, 4378, 4556
MscI TGGCCA 1 cut(s) 750
MslI CAYNNNNRTG 5 cut(s) 220, 420, 4911, 5001, 5201
Msp20I TGGCCA 1 cut(s) 750
MspA1I CMGCKG 4 cut(s) 336, 1557, 3023, 4665
MunI CAATTG 2 cut(s) 186, 2240
Mva1269I GAATGC 5 cut(s) 664, 1889, 1950, 2842, 5208
MvnI CGCG 2 cut(s) 289, 314
MwoI GCNNNNNNNGC 7 cut(s) 182, 286, 1181, 2060, 2885, 3791, 4393
NciI CCSGG 4 cut(s) 594, 595, 1064, 3119
NcoI CCATGG 2 cut(s) 1410, 3286
NlaIV GGNNCC 9 cut(s) 279, 730, 877, 2339, 2403, 3231, 3332, 3765, 4000
NmeAIII GCCGAG 3 cut(s) 342, 373, 3379
NsbI TGCGCA 1 cut(s) 1929
NsiI ATGCAT 1 cut(s) 427
NspI RCATGY 4 cut(s) 397, 826, 3204, 5059
NspV TTCGAA 2 cut(s) 91, 863
PagI TCATGA 2 cut(s) 1077, 3559
PaqCI CACCTGC 1 cut(s) 2389
PasI CCCWGGG 2 cut(s) 775, 2810
PceI AGGCCT 2 cut(s) 628, 3700
PciI ACATGT 3 cut(s) 393, 3200, 5055
PciSI GCTCTTC 1 cut(s) 2359
PcsI WCGNNNNNNNCGW 1 cut(s) 4529
PctI GAATGC 5 cut(s) 664, 1889, 1950, 2842, 5208
PdmI GAANNNNTTC 3 cut(s) 236, 4378, 4556
PflFI GACNNNGTC 1 cut(s) 904
PflMI CCANNNNNTGG 2 cut(s) 371, 1016
PfoI TCCNGGA 3 cut(s) 109, 1756, 4602
PmaCI CACGTG 2 cut(s) 485, 833
PmlI CACGTG 2 cut(s) 485, 833
Ppu21I YACGTR 2 cut(s) 485, 833
PpuMI RGGWCCY 2 cut(s) 1852, 3330
PscI ACATGT 3 cut(s) 393, 3200, 5055
PshBI ATTAAT 1 cut(s) 3588
PsiI TTATAA 2 cut(s) 534, 1347
Psp5II RGGWCCY 2 cut(s) 1852, 3330
PspCI CACGTG 2 cut(s) 485, 833
PspFI CCCAGC 1 cut(s) 274
PspN4I GGNNCC 9 cut(s) 279, 730, 877, 2339, 2403, 3231, 3332, 3765, 4000
PspPPI RGGWCCY 2 cut(s) 1852, 3330
PsrI GAACNNNNNNTAC 2 cut(s) 4474, 4506
PstI CTGCAG 3 cut(s) 2386, 4194, 4831
PstNI CAGNNNCTG 3 cut(s) 3026, 3806, 5186
PsuI RGATCY 7 cut(s) 1681, 1990, 2554, 3229, 4186, 4787, 5182
PsyI GACNNNGTC 1 cut(s) 904
PvuII CAGCTG 2 cut(s) 1557, 3023
RsaI GTAC 7 cut(s) 1423, 2899, 3393, 4266, 4371, 4779, 4823
RsaNI GTAC 7 cut(s) 1422, 2898, 3392, 4265, 4370, 4778, 4822
RseI CAYNNNNRTG 5 cut(s) 220, 420, 4911, 5001, 5201
SapI GCTCTTC 1 cut(s) 2359
SbfI CCTGCAGG 1 cut(s) 2386
ScaI AGTACT 1 cut(s) 4266
SdaI CCTGCAGG 1 cut(s) 2386
SduI GDGCHC 5 cut(s) 683, 782, 2442, 2990, 4344
SfcI CTRYAG 4 cut(s) 24, 2382, 4190, 4827
SfuI TTCGAA 2 cut(s) 91, 863
SinI GGWCC 4 cut(s) 435, 1289, 1852, 3330
SmaI CCCGGG 1 cut(s) 595
SmiMI CAYNNNNRTG 5 cut(s) 220, 420, 4911, 5001, 5201
SmlI CTYRAG 2 cut(s) 853, 4730
SmoI CTYRAG 2 cut(s) 853, 4730
SpeI ACTAGT 2 cut(s) 3089, 3148
Sse8387I CCTGCAGG 1 cut(s) 2386
SseBI AGGCCT 2 cut(s) 628, 3700
SsiI CCGC 9 cut(s) 206, 334, 345, 362, 662, 2185, 2320, 3444, 4665
SspI AATATT 1 cut(s) 4276
StuI AGGCCT 2 cut(s) 628, 3700
StyI CCWWGG 6 cut(s) 1015, 1410, 1699, 2594, 3286, 3376
TaiI ACGT 5 cut(s) 56, 487, 835, 1772, 2259
TaqI TCGA 4 cut(s) 91, 863, 2676, 4033
TaqII GACCGA 1 cut(s) 423
TatI WGTACW 4 cut(s) 1421, 2897, 4264, 4777
TauI GCSGC 2 cut(s) 208, 2188
TscAI CASTG 6 cut(s) 895, 3282, 3612, 3621, 3979, 4122
TspGWI ACGGA 3 cut(s) 2249, 4538, 5234
TspMI CCCGGG 1 cut(s) 593
TspRI CASTG 6 cut(s) 895, 3282, 3612, 3621, 3979, 4122
Tth111I GACNNNGTC 1 cut(s) 904
Van91I CCANNNNNTGG 2 cut(s) 371, 1016
VneI GTGCAC 1 cut(s) 2986
VpaK11BI GGWCC 4 cut(s) 435, 1289, 1852, 3330
VspI ATTAAT 1 cut(s) 3588
XbaI TCTAGA 1 cut(s) 3649
XceI RCATGY 4 cut(s) 397, 826, 3204, 5059
XcmI CCANNNNNNNNNTGG 1 cut(s) 1017
XmaI CCCGGG 1 cut(s) 593
XmnI GAANNNNTTC 3 cut(s) 236, 4378, 4556
ZraI GACGTC 1 cut(s) 2257
ZrmI AGTACT 1 cut(s) 4266
Zsp2I ATGCAT 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.