MD12G1111500.v1.1
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0005694
Physical Location & Seq
Forward (+)
17679599 .. 17684314
4716 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1111500.v1.1.491

Sequence Viewer

Length: 3474 bp
ATGGGGCCCATTGATTCCAATGAAGCAAAGGTTGAGTCACAGCCGAAAACAGCCACTCCAGTGCAGTCTCCTTCGGGAGAAGCTACTAATTGTGTAACATCTGCTGCACCTTTAGAGGAAACAACTTCGAGGAAGAAGCCGCGCCTTGGATGGGGCGAGGGTTTGGCAAAGTATGAGAAAAAGAAAGTCGACGTCCCTGATGGTAGCATGAACAAAGATGCGGCTGTCTGTTCTGTTGGTAACACTGAACCAGCCCATTCTCTGAGTTCAAGCTTGCCTGATAAAAGCCCCCGAGTCACAGTTTTCTCAGATTGTGCATCTCCTGCAACTCCATCCTCTGTTGCTTGCAGTTCTTCTCCAGGTGTGGAGGAGAAATCATTTTGCAAGGCAGTTAATGTTGAGAACGATACTAGAAACTTTTGTGGTTCCCCAGGTCCTATGTCTCAGATTCATCACGAGGGATTCTCATTCCAATTGGAAAAGTTGGATGGTAATTCTTTAGTTAACATGGACTCATCAATACTTGAATTGCTTCAGTCTGATGATCCAAGTTCAGTGGATTCCAGTATCCCGAGGCCGACTGCATTGAACAAGTTGCTTATATGGAAAGGTGAAATTTCAAAGGTATTGGAGGTAACTGAGTCAGAAATTGATTCACTCGAAAACGAACTTAAGGCACTGAAATCTGATTCTGGGGGCAGCTGTCCCCATCCAGCAACTTCTAGTTCTTTGCCTGTGGAGGAGAAGGATAAATCTTGCAAAGAACAGGTCACAAATTTGATCACTTGGCCTTCTCCATTGCAAATTCATTCTTCTGGGGACACTAATGTGCAGAAGATGTGTGTTGATAATGGTGACCAGGTAGAATTTTGTGGTATTGTTAAGGATGAGGATATTGATAGTCCTGGAACAGCGACATCGAAATTTGTTGAATCATTACCTTTGGTTTCATCTGATATGACGAATAAAACTGGTGGTTCTGAGGATCGGGATCCAATCCAAACAACCAAAGGAGAAGAAACGTGCTTAGTGCCCAGCAGATATGCAGAAAAGACTGACCCATCTACTTGTGGTAATAGTAGCATGCTTTTGGATAGTGAGGTAGTTGCACCGGACTCTGGTGTAGTAGTAGATAAGTTATGCGATTCTATATTTTCTGCCAATAAAATATTTGCAAGTAGAGCATCTGACATATTTAGTAAGCTGTTATCAAAAGAGCATATTTCTGGAGTTAGTGTTTCCTCATCCTGGAAGAATGATTCATTGATCAAAGAGAAGTTTGCCAAGAGGAAGCGACATTTAAGGTTTATGGAGAGAGTTATAACCTTAAAATTTAAAGCCTTTCAACACTTGTGGAAGGAAGACATGAGTGTGCTTTCCATGCGAAAATATCGTTCAAAATCTCACAAAAAATTTGAGTTAAGCTTGCGAGCAACTAATAATGGACATCAGAAGCATCGCTCTTCAATTCGATCGCGATTTTCTACACCTGGAAGTCTGAGCCTGGTCCCTACTACAGAGATTATTAATTTCACTAACAAGTTGCTGTCAGATTCCCAAGTCAAGCCGTACAGGAACTCGTTGAAGATGCCAGCCTTAATCTTGGACAAGGAGGAGAAGTTGGCGACAAGATTTGTTTCTAGTAATGGTTTAGTTGAAGATCCCTGTGCTGTTGAGAAGGAAAGGGCTTTGATGAACCCATGGACGCCAGAAGAGAAAGAACTTTTCATCCAAAAGCTAACCACCTACGGGAAGGATTTCAGAAAAATTTCTTCCTTTCTTGATCACAAGACGACTGCTGACTGTGTGGAGTTTTACTACAAACACCACAAGTCTGATTGCTTTGTGAAAACAAAGAAGAAGCCTGATATGGCTAAGCAAGGAAAGTCTTCGGCTAATACCTACTTAATTTCAGATGGGAAAAAATGGAATCGTGAGATGGATGCTGCTTCCCTTGATATTTTGGGTGCTGCTTCAGCAATCGCAGCTCATGCTGATGGTGGTACAAGAAATCGACAAACGTATTCGAGGAGGTTAATTTTGGGAGCGTACAGGAATACTAATACGTCTCGTAGTGAGGATACCACTGTTGAAAGGTCTTGCAGTCTTGATACTATTGGCAACGAAAGAGAAACAGCTGCTGCTGATGTTTTAGCAGGTATATGTGGCTCAATGTCATCTGAGGCGGTGAGTTCTTGCATCACTAGTTCCATTGATCCTGGTGAGTCTTATCTGGAATGGAAGTGCCAGAAAGGGGATTCGGTAGTAAGGCAACCTTTGACACCTGATGTTATGCAGAATGTGGATGATGAGACTTGCTCAGATGAAAGTTGTGGAGAAATGGATCCTTCTGACTGGACAGACGAGGAGAAGTCTAGATTTATTCAGGCAGTGTCATCCTATGGAAAGGATTTTGCTATGATCTCGCGATGCATTAGATCGAGGTCTCAGCATCAATGCAAGGTTTTCTTTAGCAAGGCTCGGAAGTGCCTTGGGCTTGATTTTGTACATCCTGGGCCCGGAAATGGAACATCTGTTGGTGATGATGCTAATGGAGGTGGGAGTGACACTGAAGATGCCTGTGTTCTGGAAACTGGTTCAGGTATTTCCAGTGACAAGTCAGGATGTAACATGAACGAGGATGTGCCGCCGTCTGTCACAAACATGAATGCTGATGAAGCTGATCCTGCGGAGACCATGAAATTGCAAACAAGCCCACCCAGACCGGAGGAAAACAATGTGATGGGAGAAGTAGATCATGGAGATGGTAAGCCTCTCAAATCTCTGGCTTCTGATGCATTCCAGACGGTGGATAAGCCTAAGCTAGTTTTTGATGGCGACACTGATATCATGGATTTCGATGCTATGGGAGGTAATGCAACTGAAAACAAAATTTTGGTTGCAGAATCACGACCTGTTGGTGAGGGAATCAACTCTGACCCACCTAATCCTGAATGTATGGTTGGGGAAAAATTGGTCGGTCAAATTTCTTCTGATCGATTTGGAAAGAAACTGGAGGGGAGCGATGAAAGAAGCAATAGAGATCCAAGTGGATGCTGCTTACCAGCCTCAGCACACAATTCATGTGGCAATACTTCTGATGTGGCTGCTGATGGTTCTTGTTCAGGTCCTGGCCTTAACCCTGAGTGCCCATGTCAAGTTTCTGTAGAGCTGAATTCTGTGCAAAACCCTTCTGTCATCTCGTTGACACATGAGAATGCTCCTGCTACTGCAGTTTCTGTGCCACAAGATTCTGCTGTCATTGAATGCGAGAAATCCCTTAGCCAAGATAGGTTGTCATCAACCCTGGATCTGCGGGAGGGATCTGTTGGTAGAGATGAGAGTCGCAAGCACTTGTCAGGTCTTCTGGGACATGCAAACGTCGAACCTTTGCAAGTTCTCAGAGGCTATCCATTGCAAATGGTACCCAAGAAAGAGACGAATGGGGATGTAAGTTGTGGTAAATTTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000226 GO:0000228 GO:0000785 GO:0000790 GO:0000981 GO:0001067 GO:0001085 GO:0001102 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0003714 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005874 GO:0005876 GO:0006109 GO:0006110 GO:0006139 GO:0006140 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009966 GO:0009968 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0015630 GO:0016043 GO:0016070 GO:0016922 GO:0017053 GO:0018130 GO:0019216 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019899 GO:0022402 GO:0022607 GO:0023051 GO:0023057 GO:0030808 GO:0030811 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032368 GO:0032774 GO:0032872 GO:0032873 GO:0032879 GO:0032890 GO:0032991 GO:0033613 GO:0034641 GO:0034645 GO:0034654 GO:0035257 GO:0042325 GO:0042326 GO:0042826 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043408 GO:0043409 GO:0043467 GO:0043470 GO:0044070 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0045936 GO:0046328 GO:0046329 GO:0046483 GO:0046966 GO:0048511 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051172 GO:0051174 GO:0051193 GO:0051196 GO:0051225 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051427 GO:0060147 GO:0060149 GO:0060255 GO:0060964 GO:0060965 GO:0060966 GO:0060967 GO:0060968 GO:0060969 GO:0062012 GO:0065007 GO:0070013 GO:0070302 GO:0070303 GO:0070920 GO:0070925 GO:0071704 GO:0071840 GO:0072361 GO:0072362 GO:0072367 GO:0072368 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0097659 GO:0098679 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140110 GO:1900371 GO:1900402 GO:1900542 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:1903578 GO:1903798 GO:1903799 GO:1905952 GO:2000112 GO:2000113 GO:2000191 GO:2001141 GO:2001169
KEGG Pathways
Metabolic & Signaling
ko01522 ko04919 ko05202 map01522 map04919 map05202
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

1158

Amino Acids

125.25

Weight (kDa)

5.25

Isoelectric Point (pI)

43.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 566 - 609 6.9e-10 Myb-like DNA-binding domain
Myb_DNA-bind_7 PF15963 783 - 826 1.9e-06 Myb DNA-binding like
Myb_DNA-binding PF00249 785 - 826 5.2e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1322
AatII GACGTC 1 cut(s) 195
Acc36I ACCTGC 1 cut(s) 2147
Acc65I GGTACC 1 cut(s) 3424
AccB1I GGYRCC 1 cut(s) 3424
AccB7I CCANNNNNTGG 1 cut(s) 2809
AccI GTMKAC 1 cut(s) 189
AccII CGCG 3 cut(s) 142, 1477, 2428
AciI CCGC 6 cut(s) 140, 221, 2186, 2648, 2690, 3316
AcuI CTGAAG 3 cut(s) 518, 1959, 2592
AcyI GRCGYC 2 cut(s) 192, 1706
AfaI GTAC 5 cut(s) 1571, 2005, 2051, 2508, 3426
AfiI CCNNNNNNNGG 9 cut(s) 146, 151, 1118, 1248, 1749, 2254, 2519, 2525, 2809
AflII CTTAAG 1 cut(s) 671
AhlI ACTAGT 1 cut(s) 2204
AjuI GAANNNNNNNTTGG 2 cut(s) 2946, 2978
AleI CACNNNNGTG 2 cut(s) 59, 827
AloI GAACNNNNNNTCC 2 cut(s) 1713, 1745
Alw26I GTCTC 7 cut(s) 72, 447, 2073, 2306, 2451, 2687, 3431
AlwNI CAGNNNCTG 3 cut(s) 2141, 3131, 3239
Ama87I CYCGRG 2 cut(s) 291, 571
AoxI GGCC 5 cut(s) 5, 575, 788, 2516, 3133
ApaI GGGCCC 2 cut(s) 9, 2520
ApeKI GCWGC 9 cut(s) 104, 699, 1946, 1970, 1985, 2138, 2141, 3057, 3107
ArsI GACNNNNNNTTYG 4 cut(s) 20, 52, 753, 785
AseI ATTAAT 1 cut(s) 1527
Asp700I GAANNNNTTC 4 cut(s) 531, 1757, 1768, 1888
Asp718I GGTACC 1 cut(s) 3424
AspLEI GCGC 1 cut(s) 144
AspS9I GGNCC 7 cut(s) 5, 6, 434, 1507, 2516, 2517, 3128
AsuC2I CCSGG 1 cut(s) 2520
AsuHPI GGTGA 6 cut(s) 623, 866, 2200, 2234, 2552, 2933
AvaI CYCGRG 2 cut(s) 291, 571
AvaII GGWCC 3 cut(s) 434, 1507, 3128
BaeGI GKGCMC 4 cut(s) 9, 1035, 2520, 3152
BaeI ACNNNNGTAYC 2 cut(s) 2073, 2106
BamHI GGATCC 2 cut(s) 991, 2344
BanI GGYRCC 1 cut(s) 3424
BanII GRGCYC 2 cut(s) 9, 2520
BauI CACGAG 1 cut(s) 455
BbsI GAAGAC 3 cut(s) 1368, 1881, 3356
BbvCI CCTCAGC 1 cut(s) 3070
BbvI GCAGC 9 cut(s) 91, 711, 1933, 1957, 1997, 2125, 2128, 3044, 3094
BceAI ACGGC 2 cut(s) 1552, 2635
BciVI GTATCC 2 cut(s) 578, 2074
BclI TGATCA 3 cut(s) 780, 1266, 1783
BcnI CCSGG 1 cut(s) 2520
BcoDI GTCTC 7 cut(s) 72, 447, 2073, 2306, 2451, 2687, 3431
BcuI ACTAGT 1 cut(s) 2204
BfaI CTAG 6 cut(s) 411, 723, 1641, 2205, 2376, 2825
BfmI CTRYAG 3 cut(s) 1515, 3165, 3231
BfrI CTTAAG 1 cut(s) 671
BfuAI ACCTGC 1 cut(s) 2147
BfuI GTATCC 2 cut(s) 578, 2074
BlpI GCTNAGC 1 cut(s) 1875
Bme18I GGWCC 3 cut(s) 434, 1507, 3128
BmeT110I CYCGRG 2 cut(s) 291, 571
BmgT120I GGNCC 7 cut(s) 5, 6, 434, 1507, 2516, 2517, 3128
BmiI GGNNCC 8 cut(s) 6, 7, 427, 993, 1509, 2346, 2518, 3426
BpiI GAAGAC 3 cut(s) 1368, 1881, 3356
BplI GAGNNNNNCTC 4 cut(s) 449, 481, 2303, 2335
BpmI CTGGAG 4 cut(s) 42, 342, 1248, 3035
Bpu10I CCTNAGC 3 cut(s) 2820, 3070, 3281
Bpu1102I GCTNAGC 1 cut(s) 1875
BpuMI CCSGG 1 cut(s) 2520
Bsa29I ATCGAT 1 cut(s) 2998
BsaBI GATNNNNATC 1 cut(s) 990
BsaHI GRCGYC 2 cut(s) 192, 1706
BsaI GGTCTC 2 cut(s) 2451, 2687
BsaJI CCNNGG 7 cut(s) 145, 430, 572, 1700, 2491, 2513, 3306
BsaWI WCCGGW 2 cut(s) 1111, 2725
BsaXI ACNNNNNCTCC 6 cut(s) 40, 70, 1221, 1251, 1604, 1634
Bsc4I CCNNNNNNNGG 9 cut(s) 146, 151, 1118, 1248, 1749, 2254, 2519, 2525, 2809
Bse1I ACTGG 7 cut(s) 59, 564, 976, 2360, 2599, 2610, 3018
Bse3DI GCAATG 2 cut(s) 797, 3413
Bse8I GATNNNNATC 1 cut(s) 990
BseCI ATCGAT 1 cut(s) 2998
BseDI CCNNGG 7 cut(s) 145, 430, 572, 1700, 2491, 2513, 3306
BseJI GATNNNNATC 1 cut(s) 990
BseLI CCNNNNNNNGG 9 cut(s) 146, 151, 1118, 1248, 1749, 2254, 2519, 2525, 2809
BseMI GCAATG 2 cut(s) 797, 3413
BseNI ACTGG 7 cut(s) 59, 564, 976, 2360, 2599, 2610, 3018
BseRI GAGGAG 5 cut(s) 383, 755, 1628, 2044, 2381
BseSI GKGCMC 4 cut(s) 9, 1035, 2520, 3152
BseXI GCAGC 9 cut(s) 91, 711, 1933, 1957, 1997, 2125, 2128, 3044, 3094
BseYI CCCAGC 1 cut(s) 1034
BsgI GTGCAG 3 cut(s) 83, 90, 851
Bsh1236I CGCG 3 cut(s) 142, 1477, 2428
Bsh1285I CGRYCG 1 cut(s) 1475
BshFI GGCC 5 cut(s) 7, 577, 790, 2518, 3135
BshNI GGYRCC 1 cut(s) 3424
BshVI ATCGAT 1 cut(s) 2998
BsiEI CGRYCG 1 cut(s) 1475
BsiHKCI CYCGRG 2 cut(s) 291, 571
BsiSI CCGG 3 cut(s) 1112, 2520, 2726
BslFI GGGAC 5 cut(s) 179, 690, 833, 1493, 3384
BslI CCNNNNNNNGG 9 cut(s) 146, 151, 1118, 1248, 1749, 2254, 2519, 2525, 2809
BsmAI GTCTC 7 cut(s) 72, 447, 2073, 2306, 2451, 2687, 3431
BsmBI CGTCTC 2 cut(s) 2073, 3431
BsmFI GGGAC 5 cut(s) 179, 690, 833, 1493, 3384
BsmI GAATGC 4 cut(s) 2674, 2798, 3223, 3272
BsnI GGCC 5 cut(s) 7, 577, 790, 2518, 3135
Bso31I GGTCTC 2 cut(s) 2451, 2687
BsoBI CYCGRG 2 cut(s) 291, 571
Bsp120I GGGCCC 2 cut(s) 5, 2516
Bsp1286I GDGCHC 4 cut(s) 9, 1035, 2520, 3152
Bsp1407I TGTACA 1 cut(s) 2506
Bsp1720I GCTNAGC 1 cut(s) 1875
Bsp19I CCATGG 1 cut(s) 1700
Bsp68I TCGCGA 2 cut(s) 1477, 2428
BspACI CCGC 6 cut(s) 140, 221, 2186, 2648, 2690, 3316
BspANI GGCC 5 cut(s) 7, 577, 790, 2518, 3135
BspDI ATCGAT 1 cut(s) 2998
BspFNI CGCG 3 cut(s) 142, 1477, 2428
BspLI GGNNCC 8 cut(s) 6, 7, 427, 993, 1509, 2346, 2518, 3426
BspMAI CTGCAG 1 cut(s) 3235
BspMI ACCTGC 1 cut(s) 2147
BspQI GCTCTTC 1 cut(s) 1468
BspT107I GGYRCC 1 cut(s) 3424
BspTI CTTAAG 1 cut(s) 671
BspTNI GGTCTC 2 cut(s) 2451, 2687
BsrDI GCAATG 2 cut(s) 797, 3413
BsrGI TGTACA 1 cut(s) 2506
BsrI ACTGG 7 cut(s) 59, 564, 976, 2360, 2599, 2610, 3018
BssECI CCNNGG 7 cut(s) 145, 430, 572, 1700, 2491, 2513, 3306
BssNI GRCGYC 2 cut(s) 192, 1706
BssSI CACGAG 1 cut(s) 455
BssT1I CCWWGG 3 cut(s) 145, 1700, 2491
Bst2BI CACGAG 1 cut(s) 455
Bst4CI ACNGT 4 cut(s) 301, 1805, 2089, 2809
Bst6I CTCTTC 2 cut(s) 1468, 1707
BstACI GRCGYC 2 cut(s) 192, 1706
BstAFI CTTAAG 1 cut(s) 671
BstAPI GCANNNNNTGC 2 cut(s) 323, 1991
BstAUI TGTACA 1 cut(s) 2506
BstC8I GCNNGC 7 cut(s) 275, 346, 1085, 1427, 1431, 1593, 3350
BstDSI CCRYGG 1 cut(s) 1700
BstEII GGTNACC 1 cut(s) 854
BstFNI CGCG 3 cut(s) 142, 1477, 2428
BstHHI GCGC 1 cut(s) 144
BstMAI GTCTC 7 cut(s) 72, 447, 2073, 2306, 2451, 2687, 3431
BstMCI CGRYCG 1 cut(s) 1475
BstMWI GCNNNNNNNGC 9 cut(s) 323, 1181, 1381, 1976, 1985, 1991, 2678, 2687, 2795
BstNSI RCATGY 2 cut(s) 1087, 3377
BstPI GGTNACC 1 cut(s) 854
BstSFI CTRYAG 3 cut(s) 1515, 3165, 3231
BstSLI GKGCMC 4 cut(s) 9, 1035, 2520, 3152
BstUI CGCG 3 cut(s) 142, 1477, 2428
BstV1I GCAGC 9 cut(s) 91, 711, 1933, 1957, 1997, 2125, 2128, 3044, 3094
BstV2I GAAGAC 3 cut(s) 1368, 1881, 3356
BstX2I RGATCY 6 cut(s) 991, 1660, 2344, 3043, 3310, 3323
BstYI RGATCY 6 cut(s) 991, 1660, 2344, 3043, 3310, 3323
Bsu15I ATCGAT 1 cut(s) 2998
BsuI GTATCC 2 cut(s) 578, 2074
BsuRI GGCC 5 cut(s) 7, 577, 790, 2518, 3135
BsuTUI ATCGAT 1 cut(s) 2998
BtgI CCRYGG 1 cut(s) 1700
BtgZI GCGATG 3 cut(s) 1442, 2443, 3039
BtsI GCAGTG 1 cut(s) 2397
BtsIMutI CAGTG 9 cut(s) 66, 243, 561, 677, 2085, 2397, 2568, 2617, 2841
BtuMI TCGCGA 2 cut(s) 1477, 2428
BveI ACCTGC 1 cut(s) 2147
Cac8I GCNNGC 7 cut(s) 275, 346, 1085, 1427, 1431, 1593, 3350
CaiI CAGNNNCTG 3 cut(s) 2141, 3131, 3239
CfoI GCGC 1 cut(s) 144
Cfr13I GGNCC 7 cut(s) 5, 6, 434, 1507, 2516, 2517, 3128
ClaI ATCGAT 1 cut(s) 2998
CseI GACGC 1 cut(s) 1714
CsiI ACCWGGT 1 cut(s) 858
Csp6I GTAC 5 cut(s) 1570, 2004, 2050, 2507, 3425
CspCI CAANNNNNGTGG 6 cut(s) 537, 572, 1334, 1369, 3067, 3102
CviQI GTAC 5 cut(s) 1570, 2004, 2050, 2507, 3425
DraI TTTAAA 1 cut(s) 1336
Eam1104I CTCTTC 2 cut(s) 1468, 1707
EarI CTCTTC 2 cut(s) 1468, 1707
Eco130I CCWWGG 3 cut(s) 145, 1700, 2491
Eco24I GRGCYC 2 cut(s) 9, 2520
Eco31I GGTCTC 2 cut(s) 2451, 2687
Eco32I GATATC 1 cut(s) 2848
Eco47I GGWCC 3 cut(s) 434, 1507, 3128
Eco57I CTGAAG 3 cut(s) 518, 1959, 2592
Eco88I CYCGRG 2 cut(s) 291, 571
Eco91I GGTNACC 1 cut(s) 854
EcoO109I RGGNCCY 3 cut(s) 5, 434, 3128
EcoO65I GGTNACC 1 cut(s) 854
EcoRI GAATTC 1 cut(s) 3175
EcoRV GATATC 1 cut(s) 2848
EcoT14I CCWWGG 3 cut(s) 145, 1700, 2491
EcoT22I ATGCAT 2 cut(s) 2435, 2800
EcoT38I GRGCYC 2 cut(s) 9, 2520
ErhI CCWWGG 3 cut(s) 145, 1700, 2491
Esp3I CGTCTC 2 cut(s) 2073, 3431
FalI AAGNNNNNCTT 4 cut(s) 2260, 2292, 2453, 2485
FaqI GGGAC 5 cut(s) 179, 690, 833, 1493, 3384
FauI CCCGC 1 cut(s) 3309
FbaI TGATCA 3 cut(s) 780, 1266, 1783
FblI GTMKAC 1 cut(s) 189
FriOI GRGCYC 2 cut(s) 9, 2520
FspBI CTAG 6 cut(s) 411, 723, 1641, 2205, 2376, 2825
GlaI GCGC 1 cut(s) 143
GsaI CCCAGC 1 cut(s) 1038
GsuI CTGGAG 4 cut(s) 42, 342, 1248, 3035
HaeIII GGCC 5 cut(s) 7, 577, 790, 2518, 3135
HapII CCGG 3 cut(s) 1112, 2520, 2726
HgaI GACGC 1 cut(s) 1714
HhaI GCGC 1 cut(s) 144
Hin1I GRCGYC 2 cut(s) 192, 1706
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
HincII GTYRAC 3 cut(s) 190, 505, 3207
HindII GTYRAC 3 cut(s) 190, 505, 3207
HindIII AAGCTT 2 cut(s) 271, 1423
HpaI GTTAAC 1 cut(s) 505
HpaII CCGG 3 cut(s) 1112, 2520, 2726
HphI GGTGA 6 cut(s) 623, 866, 2200, 2234, 2552, 2933
Hpy166II GTNNAC 3 cut(s) 190, 505, 3207
Hpy8I GTNNAC 3 cut(s) 190, 505, 3207
Hpy99I CGWCG 2 cut(s) 194, 3386
HpyAV CCTTC 8 cut(s) 81, 739, 801, 1351, 1672, 1747, 2358, 3201
HpyCH4III ACNGT 4 cut(s) 301, 1805, 2089, 2809
HpyCH4IV ACGT 5 cut(s) 192, 1022, 2021, 2066, 3381
HpyF10VI GCNNNNNNNGC 9 cut(s) 323, 1181, 1381, 1976, 1985, 1991, 2678, 2687, 2795
HpySE526I ACGT 5 cut(s) 192, 1022, 2021, 2066, 3381
Hsp92I GRCGYC 2 cut(s) 192, 1706
HspAI GCGC 1 cut(s) 142
KpnI GGTACC 1 cut(s) 3428
Ksp22I TGATCA 3 cut(s) 780, 1266, 1783
KspAI GTTAAC 1 cut(s) 505
LguI GCTCTTC 1 cut(s) 1468
LmnI GCTCC 3 cut(s) 2045, 3021, 3226
Lsp1109I GCAGC 9 cut(s) 91, 711, 1933, 1957, 1997, 2125, 2128, 3044, 3094
MabI ACCWGGT 1 cut(s) 858
MaeI CTAG 6 cut(s) 411, 723, 1641, 2205, 2376, 2825
MaeII ACGT 5 cut(s) 192, 1022, 2021, 2066, 3381
MfeI CAATTG 1 cut(s) 473
MflI RGATCY 6 cut(s) 991, 1660, 2344, 3043, 3310, 3323
MhlI GDGCHC 4 cut(s) 9, 1035, 2520, 3152
MlyI GAGTC 7 cut(s) 44, 303, 506, 650, 1109, 2234, 3352
MmeI TCCRAC 1 cut(s) 465
Mph1103I ATGCAT 2 cut(s) 2435, 2800
MroXI GAANNNNTTC 4 cut(s) 531, 1757, 1768, 1888
MslI CAYNNNNRTG 7 cut(s) 59, 827, 1370, 1995, 2663, 2763, 3216
MspA1I CMGCKG 2 cut(s) 702, 2138
MspCI CTTAAG 1 cut(s) 671
MspI CCGG 3 cut(s) 1112, 2520, 2726
MunI CAATTG 1 cut(s) 473
Mva1269I GAATGC 4 cut(s) 2674, 2798, 3223, 3272
MvnI CGCG 3 cut(s) 142, 1477, 2428
MwoI GCNNNNNNNGC 9 cut(s) 323, 1181, 1381, 1976, 1985, 1991, 2678, 2687, 2795
NciI CCSGG 1 cut(s) 2520
NcoI CCATGG 1 cut(s) 1700
NlaIV GGNNCC 8 cut(s) 6, 7, 427, 993, 1509, 2346, 2518, 3426
NmuCI GTSAC 7 cut(s) 36, 295, 769, 854, 2564, 2612, 2656
NruI TCGCGA 2 cut(s) 1477, 2428
NsiI ATGCAT 2 cut(s) 2435, 2800
NspI RCATGY 2 cut(s) 1087, 3377
OliI CACNNNNGTG 2 cut(s) 59, 827
PaeI GCATGC 1 cut(s) 1087
PciSI GCTCTTC 1 cut(s) 1468
PctI GAATGC 4 cut(s) 2674, 2798, 3223, 3272
PdmI GAANNNNTTC 4 cut(s) 531, 1757, 1768, 1888
PflMI CCANNNNNTGG 1 cut(s) 2809
PfoI TCCNGGA 2 cut(s) 904, 1247
Ple19I CGATCG 1 cut(s) 1475
PleI GAGTC 7 cut(s) 43, 302, 506, 649, 1109, 2233, 3351
PpsI GAGTC 7 cut(s) 43, 302, 506, 649, 1109, 2233, 3351
PpuMI RGGWCCY 2 cut(s) 434, 3128
PshBI ATTAAT 1 cut(s) 1527
PsiI TTATAA 1 cut(s) 1322
Psp5II RGGWCCY 2 cut(s) 434, 3128
PspEI GGTNACC 1 cut(s) 854
PspFI CCCAGC 1 cut(s) 1034
PspN4I GGNNCC 8 cut(s) 6, 7, 427, 993, 1509, 2346, 2518, 3426
PspOMI GGGCCC 2 cut(s) 5, 2516
PspPI GGNCC 7 cut(s) 5, 6, 434, 1507, 2516, 2517, 3128
PspPPI RGGWCCY 2 cut(s) 434, 3128
PstI CTGCAG 1 cut(s) 3235
PstNI CAGNNNCTG 3 cut(s) 2141, 3131, 3239
PsuI RGATCY 6 cut(s) 991, 1660, 2344, 3043, 3310, 3323
PvuI CGATCG 1 cut(s) 1475
PvuII CAGCTG 2 cut(s) 702, 2138
RruI TCGCGA 2 cut(s) 1477, 2428
RsaI GTAC 5 cut(s) 1571, 2005, 2051, 2508, 3426
RsaNI GTAC 5 cut(s) 1570, 2004, 2050, 2507, 3425
RseI CAYNNNNRTG 7 cut(s) 59, 827, 1370, 1995, 2663, 2763, 3216
SalI GTCGAC 1 cut(s) 188
SapI GCTCTTC 1 cut(s) 1468
Sau96I GGNCC 7 cut(s) 5, 6, 434, 1507, 2516, 2517, 3128
SchI GAGTC 7 cut(s) 44, 303, 506, 650, 1109, 2234, 3352
SduI GDGCHC 4 cut(s) 9, 1035, 2520, 3152
SexAI ACCWGGT 1 cut(s) 858
SfcI CTRYAG 3 cut(s) 1515, 3165, 3231
SinI GGWCC 3 cut(s) 434, 1507, 3128
SmiMI CAYNNNNRTG 7 cut(s) 59, 827, 1370, 1995, 2663, 2763, 3216
SmlI CTYRAG 1 cut(s) 671
SmoI CTYRAG 1 cut(s) 671
SpeI ACTAGT 1 cut(s) 2204
SphI GCATGC 1 cut(s) 1087
SsiI CCGC 6 cut(s) 140, 221, 2186, 2648, 2690, 3316
SspI AATATT 1 cut(s) 1170
SspMI CTAG 6 cut(s) 411, 723, 1641, 2205, 2376, 2825
StyI CCWWGG 3 cut(s) 145, 1700, 2491
TaaI ACNGT 4 cut(s) 301, 1805, 2089, 2809
TaiI ACGT 5 cut(s) 195, 1025, 2024, 2069, 3384
TaqII GACCGA 1 cut(s) 2969
TatI WGTACW 1 cut(s) 2506
TauI GCSGC 3 cut(s) 142, 224, 2650
TscAI CASTG 9 cut(s) 66, 250, 561, 684, 2092, 2397, 2575, 2617, 2848
TseFI GTSAC 7 cut(s) 36, 295, 769, 854, 2564, 2612, 2656
TseI GCWGC 9 cut(s) 104, 699, 1946, 1970, 1985, 2138, 2141, 3057, 3107
Tsp45I GTSAC 7 cut(s) 36, 295, 769, 854, 2564, 2612, 2656
TspRI CASTG 9 cut(s) 66, 250, 561, 684, 2092, 2397, 2575, 2617, 2848
Van91I CCANNNNNTGG 1 cut(s) 2809
Vha464I CTTAAG 1 cut(s) 671
VpaK11BI GGWCC 3 cut(s) 434, 1507, 3128
VspI ATTAAT 1 cut(s) 1527
XbaI TCTAGA 1 cut(s) 2375
XceI RCATGY 2 cut(s) 1087, 3377
XmiI GTMKAC 1 cut(s) 189
XmnI GAANNNNTTC 4 cut(s) 531, 1757, 1768, 1888
XspI CTAG 6 cut(s) 411, 723, 1641, 2205, 2376, 2825
ZraI GACGTC 1 cut(s) 193
Zsp2I ATGCAT 2 cut(s) 2435, 2800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.