Rroxscaffold_4G00292930
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0005694
Physical Location & Seq
Reverse (-)
13109570 .. 13117757
8188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00292930.1

Sequence Viewer

Length: 5115 bp
ATGCCGCCAGAACCATTGTCGTGGGATCGGAAGGAGTTCTTGAAGGAGAGGAAGCACGAGAGGTCGGAGTCGCTGGGACCCGTGGCGCGATGGAGGGACTCGCCTCATCACGCGCCGAGGGAGTTCAACAACCGGTGGCAGTCCGCCGAGTTTCGCAGGCCGCCAGGTCATGGTAAACAGGGTGGTTGGCACATGTTTTCGGATGATTCTGGTCATGGATATACATCTTCTCGATCCAGCGAGAAGATGCTGGAGGATGAGAGCTTCCGGCCGTCATTTTCACGTGGAGAAGGACGGTATGGCAGGAACAGTAGGGATAGTAGAGGGTCTTATAACCAGAGGGACTGTAAAGGACATTCTTGGGAAACCAGCAGTCTGTCTCCCAACACCCCCGGGAGGCCAAATGATATGAATAATGAACAAAGGCCTCAGGATGATAATATGACATACTCATCTAATCCGCATTCTGACTTTGGGAGCACATGGGATCAGATTCAGTTGAAAGACCACCTTGATAGGACGGGTGGTTCCAATGGTATAGCTGGTGGCCAGAAATGTGAGAGAGAGAATTCCCTGGGCTCAATGGATTGGAGGCATCGTAAATGGTCACGGTCTGGAAGCATGTCTTCACGTGGTTCAGGTTTCAGCCACTCAAGTAGTTCGAAAAGCATTGGGCCCATAGATTCCAGTGAAGCAAAGACTGAGTCGCAGCCGAAAAATGCAACTCCGGTGCAGTCTCCCTCAGGGGATGCTACTGCCTGTGTGACATCTGCTGCACTATCAGAGGAGACAAATTCTAGGAAAAAGCCACGCCTTGGATGGGGTGAGGGACTGGCAAAGTATGAGAAAAAGAAAGTTGACCCGGCTGATGTTATCATGAACAAGGATGGGGCTGTCTGTCCTGTTGGTAATATGGAACCTGTCCACACTCTCAGTTCACACTTGGCAGATAAAAGCCCCAGAGTTACGATGCTTTCGGATTGTGCATCTCCTGCAACTCCATCCTCTGTTGCTTGCAGTTCCTCTCCAGGTGTTGAAGAGAAACCATTTGTCAAGGCAGCCGGTGTTGATAATGATGGTAATTTATATCGTTCTCCTGGTCCTGAGCTTCAGAGTCATCAAGAGGGATTTTCGTTCAAATTAGAAACGCTGGATTATAATTCCCTAGCTAATGTTAGCTCATCATTACATGAATTGCTCCAGTCTGATGATCCAAGTCCCATGGATTCTAGTACAATGAGACCTACTGCAATGAACAAGTTGCTTATATGGAAAGGTGATATTTCAAAAGTATTGGAGGTGACTGAATCAGAAATTGATTTGCTTGAAAATGAACTGAAGATATTGAACTCTGATTCTAGGGACAGCTGTCCAGCAGCTTCCAGTTCTTTGCCTGTTGAGGAGAGTGATAAATCTGGCAAAGAACACGCTACTGCCAAAAATTTGATCACCAGACCTGCTCCATTGCAAATTTTTTCTTCTGAGGATACAGATCCAGAGAAGTTGGCCCTTGGTAATGGAGAACAGGGAGAGTCCTGTGGTGTTAAGGATCAAGATATGGATAGTCCTGGAACAGCAACGTCAAAATTTGTTGAACAGTTACCTTTGTTGAAGCTGGCTTCATCTGATATGGGGAATCCAAGTGGTTGTGCTGAGAACCAGGACCTAGTTCAAACGGCTGAAAGGGATGTAGAATGCTCAGTGGCTGGTAAAGATGAAGAAAAAAGTGACCTGTCTGCGCATGGAAATAGTAGAATGCTTTTAGTTTGTGAGATAGTTACACCTGTTTCTGATGGTTTGGATCTTTGTGCTGGTGTAGTTGATACATTATGTGATACTATATTTTCTTCCAATAAAGAATCTGCAAATAGAGCGTCTGACATATTTAATAAGCTGTTGCCCAAAGATAACTGTGAAGTTGATATTTCGGGACTTGGTGTTTCCTCATCATGGAAGAATGATTCATTGATCAAAGAGAAGTTCAAAGCAAGGAAGCGGCGTTTAAGGTTTATGGAGAGAGTCATAACCTTAAAATATAAGGCCCATCAGCAATTGTGGAAGGAAGACGTCCGTTTGCTTTCAGAGCGAAAATATCGTCCAAAATCTCACAAAAAATGTGATTTAGGATTGCGGAACACTACTAATGGGTCCCAAAAGCATCGCTCTTCCATTCGCTCCCGTTTTTCTACACCTGCGGGAAATTTGAGCCTGGTTCCTACTAAAGAGGTTGAGAAGTTTGCTAACAAGGTGCTCTGTGATTCCCAAGTCAAGCTTTATAGGAATTCATTGAAGATGCCAGCCTTAATTTTGGACAAGAAGGAGAAGATTGTGACAAGGTTTGTTTCTAGTAATGGCTTAGTTGAAGATCCCTGCGCTGTTGAGAAGGAAAGGGCTTTGATTAACCCTTGGACACCAGAAGAAAAAGAAGCTTTCATTGAAAAGTTGGCGGCCTTTGGGAAAGATTTTAAAAAGATTGCCTCTTTTTTCGACCACAAGACAACTGCCGACTGTGTTGAGTTCTACTACAAGCATCACAAATCTGCTGCTTTTCAGAAAGCAAAGAAGAAGCCTGATATCTCTAAACTAGGAAAGTCCTCTGCCAATACCTACATGATTAACCCTGGGACAAAATGGAATCGTGAGGTGAATGCTGCTTCCCTTGATATTCTTGGTGCTGCTTCTGTGATGGCAGCTCAGGCTGATGGCAGTACAAGAAATCGGACTGGGCGTTTAATTTTAGGAGGTTACAAGAATGCGAAGACATCACAGAGTGATGATGTGACTGTTGAAAGGTCGTGCAGTTTTGACGTTATTGGGAATGAGAGAGAAACAGCTGCTGCTGATGTTTTAGCAGGTATCTGTGGCTCTCTGTCTTCCGAGGCTGTCAGTTCTTGCATCACTAGTTCCATTGATCCTGGTGACGGTTGCCGGGAATGGAAGTGCCAGAAAGTTGATTCACTGGTAAGACGACCTTTGACACCTGATGTTATGCAAAGTGTTGATGATGAGACATGTTCAGATGAGAGTTGTGGTGAAATGGATCCTTCTGATTGGACAGATGAGGAGAAGTCTAGCTTTGTACAGGCAGTGTCATCCCATGGTAAGGACTTTGCTATGATCTCACGATGTGTAAGAACGAGGTCCCAGAATCAATGCAAGGTTTTCTTTAGTAAGGCTCGGAAGTGCCTTGGGCTTGATTTGGTACATCCTCGGCGTGGAAATGAAGGAGCTTCTATTGTTGATGATGCTAATGGTGGTGGGAGTGATACTGAAGATGCCTGCGTTGTGGAAACTGGTTCTGGTATTTCCATTGATAAGTCAGGTTGTGAAATGAATGAGGACATGCCATTGTCTGTTATGGACATGGATCATGAAGACTCTGATCCTGAAGAGACCATTAATTTGAAATGTGATCCACTGGGATCAGTGGAAAACAATGTGAAGGGAGAAGTTGACCATCTAGATAACAAGGCTCTTAAATCTTCTGATGCACTCCAGATGGAAGATAGGCCCAAGGTAGTTTTTGATGATGTCACTAACATCATGGATGTTGGCGACAGACTGTCCGAGTCAGTGCGTGCCCAGAGAAGTGAAGCATTTTCTGCTGATGCAGGTGCTGTGAGAGATAATGTGGCTGAAAAGGGAGGTTTGGTTGCAGAGTCACTCATTGGTGAGGGAATCAGCTCTGACCTACCTAAATTGGAGGGACAAGGTGAAAGATGCAATACAAGTGGATGTGGCTTACAAGTTTCAGCAAATGATTCTAATTCTAGTGGCAGTGCTTCTGACATGGCTGCTGAAGGTTCCTGTTCAGGTTTGGCTGCTGAGTGCCTGCATCAAGTGTCGGTTGAGTTGAATTCTATGCAAAAGTCGTCTGTCAATTCATTGTCACATGAGAATCTTCTTGCTACTGCAATTTCAGTGCCAGAAAATTCTGCTGTAGTTGAATATGGGAAAGCCATTAACCAAGATAGGTTGTCATCAACATCAGATCTGCAGGAGGGTAGAGATAAGCAGTCCTTATCTGTTGGTGGAGATGATTGTCACAAGCACTTGCCTGGTCTTCCAGTATTGACAAATGTTGATCCAGCCCATGTTCTCAGGGGTTATCCATTGCACATGGCAACGAAGAAAGAGACCAATGGGCACATCAGTTCTGGTAACTTATCTGAAGTACAAAACCTTTCAAAGCCAGACGGGCCAAAAGATTGCCTCCTTCAGTTTGGTAACTGCAGACCCCGAAGTTCTCAGGATTTTCCACTTGTGCATCAAAAGATAGAGCGCCGAACTGATACTACAAAAGCCCATTCATGGAGTTCATCAGATACGGATAAACCGAGCAGGAATGGTGATGTGAAACTGTTCGGTAAGATACTCACCAATACCTCCAAGTCCAGTTCCAGTATCCAGGAGAATGAAGAAAAGGGGTCCCATATCCATAATTTAAGCAACAAGTCATCTAACTTAAAATTCAGCGGGCATCATACCGTAGATGGAAACTCTGGCGTCCTGAAGTTTGATGGTAGTAATTATGCTGGTCTTGAGAATGTTCCCAGGAGGAGTTACAGCTTTTGGGAAGGGAACAAAGTACAAAATGGGCATCCATCTTTTCCTGATTCGGCCATCTTGCTTGCGAAGTACCCTGCAGCTTTCGGTAACTTTCCTACATCCTCATCCAAATTGGAACAGAAACCATTGCAGGCAGTTGGTAGGAACAATGAGGGCCATGTAAATGGTGCATCAGTTTTTCCTTCAAGGGAAATTAGTAGCAGCAGCAGTAGTGGAATTGTTGATTATCATCAGGTGTTCAGTAGGCATCGTGATGGTGGTGCTAAAGTGCCACCATTTTCAGTAGATGTGAAGCAGAGGCAAGACATATTTGATGTTTCAAGACGAAATGGGTTTGAATCAAGTTTACAGCAGCAAGGAAGGGGGATTGTCGGGATGAATGTGGTAGGGAGAGGGGGAATTATGGTAGGAGGGCCATGCACAGGTGTTTCAGATCCTGTGGCTGCCATAAGAATGCACTATGCAAAAACAGAACAGTATGGAGGGCAGGGGAGCATCATCAGGGAGGAGGAGTCGTGGAGAGGTAAGGGTGACATAGGGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000226 GO:0000228 GO:0000785 GO:0000790 GO:0000981 GO:0001067 GO:0001085 GO:0001102 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0003714 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005874 GO:0005876 GO:0006109 GO:0006110 GO:0006139 GO:0006140 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009966 GO:0009968 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0015630 GO:0016043 GO:0016070 GO:0016922 GO:0017053 GO:0018130 GO:0019216 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019899 GO:0022402 GO:0022607 GO:0023051 GO:0023057 GO:0030808 GO:0030811 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032368 GO:0032774 GO:0032872 GO:0032873 GO:0032879 GO:0032890 GO:0032991 GO:0033613 GO:0034641 GO:0034645 GO:0034654 GO:0035257 GO:0042325 GO:0042326 GO:0042826 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043408 GO:0043409 GO:0043467 GO:0043470 GO:0044070 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0045936 GO:0046328 GO:0046329 GO:0046483 GO:0046966 GO:0048511 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051172 GO:0051174 GO:0051193 GO:0051196 GO:0051225 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051427 GO:0060147 GO:0060149 GO:0060255 GO:0060964 GO:0060965 GO:0060966 GO:0060967 GO:0060968 GO:0060969 GO:0062012 GO:0065007 GO:0070013 GO:0070302 GO:0070303 GO:0070920 GO:0070925 GO:0071704 GO:0071840 GO:0072361 GO:0072362 GO:0072367 GO:0072368 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0097659 GO:0098679 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140110 GO:1900371 GO:1900402 GO:1900542 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:1903578 GO:1903798 GO:1903799 GO:1905952 GO:2000112 GO:2000113 GO:2000191 GO:2001141 GO:2001169
KEGG Pathways
Metabolic & Signaling
ko01522 ko04919 ko05202 map01522 map04919 map05202
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

1704

Amino Acids

185.55

Weight (kDa)

5.96

Isoelectric Point (pI)

47.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 802 - 844 3.9e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 1017 - 1058 3.8e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 333, 1158
AarI CACCTGC 2 cut(s) 2200, 3602
AatII GACGTC 1 cut(s) 2070
Acc16I TGCGCA 1 cut(s) 1740
Acc36I ACCTGC 4 cut(s) 1465, 2200, 2843, 3602
AccB7I CCANNNNNTGG 2 cut(s) 170, 815
AccII CGCG 2 cut(s) 88, 113
AciI CCGC 9 cut(s) 5, 144, 161, 461, 1996, 2131, 2195, 2447, 4476
AcoI YGGCCR 3 cut(s) 269, 547, 4620
AcuI CTGAAG 8 cut(s) 1094, 1358, 3291, 3408, 3819, 4191, 4202, 4532
AcvI CACGTG 2 cut(s) 284, 632
AcyI GRCGYC 2 cut(s) 2067, 4506
AdeI CACNNNGTG 2 cut(s) 2771, 3128
AfaI GTAC 7 cut(s) 1234, 2710, 3081, 3204, 4176, 4590, 4640
AflIII ACRYGT 2 cut(s) 192, 3011
AgeI ACCGGT 1 cut(s) 132
AhdI GACNNNNNGTC 1 cut(s) 3562
AhlI ACTAGT 1 cut(s) 2900
AloI GAACNNNNNNTCC 2 cut(s) 511, 543
Alw21I GWGCWC 2 cut(s) 482, 2253
Alw26I GTCTC 7 cut(s) 384, 741, 782, 1234, 3002, 3386, 4130
AlwNI CAGNNNCTG 4 cut(s) 1706, 2837, 3617, 5006
Ama87I CYCGRG 1 cut(s) 392
ApaI GGGCCC 1 cut(s) 678
ArsI GACNNNNNNTTYG 8 cut(s) 689, 721, 1859, 1891, 2080, 2112, 3385, 3417
AseI ATTAAT 1 cut(s) 3399
AsiGI ACCGGT 1 cut(s) 132
Asp700I GAANNNNTTC 2 cut(s) 35, 4361
AspLEI GCGC 5 cut(s) 88, 115, 1741, 2375, 4284
AsuC2I CCSGG 4 cut(s) 393, 394, 863, 2930
AsuII TTCGAA 1 cut(s) 662
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 6 cut(s) 77, 1100, 1663, 2148, 3141, 4428
AxyI CCTNAGG 2 cut(s) 429, 742
BaeGI GKGCMC 3 cut(s) 678, 3583, 4149
BalI TGGCCA 1 cut(s) 549
BamHI GGATCC 1 cut(s) 3040
BanII GRGCYC 2 cut(s) 581, 678
BauI CACGAG 1 cut(s) 56
BbrPI CACGTG 2 cut(s) 284, 632
BbsI GAAGAC 6 cut(s) 618, 2070, 2765, 2865, 3381, 4055
Bbv12I GWGCWC 2 cut(s) 482, 2253
BceAI ACGGC 2 cut(s) 256, 1692
BciVI GTATCC 2 cut(s) 1480, 4415
BclI TGATCA 2 cut(s) 1446, 1968
BcnI CCSGG 4 cut(s) 393, 394, 863, 2930
BcoDI GTCTC 7 cut(s) 384, 741, 782, 1234, 3002, 3386, 4130
BcuI ACTAGT 1 cut(s) 2900
BfmI CTRYAG 4 cut(s) 3939, 3995, 4231, 4644
BfoI RGCGCY 1 cut(s) 4285
BfuAI ACCTGC 4 cut(s) 1465, 2200, 2843, 3602
BfuI GTATCC 2 cut(s) 1480, 4415
BglI GCCNNNNNGGC 1 cut(s) 4198
BglII AGATCT 1 cut(s) 3991
Bme18I GGWCC 6 cut(s) 77, 1100, 1663, 2148, 3141, 4428
BmeRI GACNNNNNGTC 1 cut(s) 3562
BmeT110I CYCGRG 1 cut(s) 392
BmrI ACTGGG 2 cut(s) 2733, 3428
BmuI ACTGGG 2 cut(s) 2733, 3428
BoxI GACNNNNGTC 1 cut(s) 1368
BpiI GAAGAC 6 cut(s) 618, 2070, 2765, 2865, 3381, 4055
BpmI CTGGAG 4 cut(s) 272, 1011, 1184, 3479
Bpu10I CCTNAGC 2 cut(s) 1104, 2694
Bpu14I TTCGAA 1 cut(s) 662
BpuEI CTTGAG 2 cut(s) 637, 4562
BpuMI CCSGG 4 cut(s) 393, 394, 863, 2930
BsaAI YACGTR 2 cut(s) 284, 632
BsaBI GATNNNNATC 3 cut(s) 223, 1491, 4797
BsaHI GRCGYC 2 cut(s) 2067, 4506
BsaI GGTCTC 3 cut(s) 1234, 3386, 4130
BsaWI WCCGGW 2 cut(s) 132, 727
BsaXI ACNNNNNCTCC 8 cut(s) 583, 613, 3636, 3666, 5066, 5069, 5096, 5099
Bse118I RCCGGY 2 cut(s) 132, 1061
Bse21I CCTNAGG 2 cut(s) 429, 742
Bse3DI GCAATG 4 cut(s) 1257, 1463, 4112, 4694
Bse8I GATNNNNATC 3 cut(s) 223, 1491, 4797
BseJI GATNNNNATC 3 cut(s) 223, 1491, 4797
BseMI GCAATG 4 cut(s) 1257, 1463, 4112, 4694
BseRI GAGGAG 6 cut(s) 800, 1415, 3077, 4573, 5090, 5093
BseSI GKGCMC 3 cut(s) 678, 3583, 4149
BseX3I CGGCCG 1 cut(s) 269
BseYI CCCAGC 1 cut(s) 73
BsgI GTGCAG 3 cut(s) 752, 759, 2818
Bsh1236I CGCG 2 cut(s) 88, 113
Bsh1285I CGRYCG 1 cut(s) 272
BshTI ACCGGT 1 cut(s) 132
BsiEI CGRYCG 1 cut(s) 272
BsiHKAI GWGCWC 2 cut(s) 482, 2253
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 7 cut(s) 133, 268, 393, 728, 863, 1062, 2929
BsmAI GTCTC 7 cut(s) 384, 741, 782, 1234, 3002, 3386, 4130
BsmI GAATGC 6 cut(s) 463, 1700, 1761, 2653, 2758, 5028
Bso31I GGTCTC 3 cut(s) 1234, 3386, 4130
BsoBI CYCGRG 1 cut(s) 392
Bsp119I TTCGAA 1 cut(s) 662
Bsp120I GGGCCC 1 cut(s) 674
Bsp1286I GDGCHC 6 cut(s) 482, 581, 678, 2253, 3583, 4149
Bsp1407I TGTACA 1 cut(s) 3079
Bsp19I CCATGG 2 cut(s) 1221, 3097
BspACI CCGC 9 cut(s) 5, 144, 161, 461, 1996, 2131, 2195, 2447, 4476
BspFNI CGCG 2 cut(s) 88, 113
BspHI TCATGA 2 cut(s) 876, 3370
BspMAI CTGCAG 3 cut(s) 3999, 4235, 4648
BspMI ACCTGC 4 cut(s) 1465, 2200, 2843, 3602
BspQI GCTCTTC 1 cut(s) 2170
BspT104I TTCGAA 1 cut(s) 662
BspTNI GGTCTC 3 cut(s) 1234, 3386, 4130
BsrDI GCAATG 4 cut(s) 1257, 1463, 4112, 4694
BsrFI RCCGGY 2 cut(s) 132, 1061
BsrGI TGTACA 1 cut(s) 3079
BssAI RCCGGY 2 cut(s) 132, 1061
BssNI GRCGYC 2 cut(s) 2067, 4506
BssSI CACGAG 1 cut(s) 56
BssT1I CCWWGG 7 cut(s) 814, 1221, 1510, 2405, 3097, 3187, 3513
Bst2BI CACGAG 1 cut(s) 56
Bst6I CTCTTC 3 cut(s) 1032, 2170, 3384
BstACI GRCGYC 2 cut(s) 2067, 4506
BstAPI GCANNNNNTGC 2 cut(s) 992, 3602
BstAUI TGTACA 1 cut(s) 3079
BstBAI YACGTR 2 cut(s) 284, 632
BstBI TTCGAA 1 cut(s) 662
BstDSI CCRYGG 3 cut(s) 81, 1221, 3097
BstFNI CGCG 2 cut(s) 88, 113
BstH2I RGCGCY 1 cut(s) 4285
BstHHI GCGC 5 cut(s) 88, 115, 1741, 2375, 4284
BstMAI GTCTC 7 cut(s) 384, 741, 782, 1234, 3002, 3386, 4130
BstMCI CGRYCG 1 cut(s) 272
BstMWI GCNNNNNNNGC 6 cut(s) 992, 1871, 2083, 2696, 3602, 4198
BstNSI RCATGY 4 cut(s) 196, 625, 3015, 3346
BstPAI GACNNNNGTC 1 cut(s) 1368
BstSFI CTRYAG 4 cut(s) 3939, 3995, 4231, 4644
BstSLI GKGCMC 3 cut(s) 678, 3583, 4149
BstUI CGCG 2 cut(s) 88, 113
BstV2I GAAGAC 6 cut(s) 618, 2070, 2765, 2865, 3381, 4055
BstX2I RGATCY 6 cut(s) 1492, 1801, 2365, 3040, 3991, 5002
BstXI CCANNNNNNTGG 2 cut(s) 21, 4733
BstYI RGATCY 6 cut(s) 1492, 1801, 2365, 3040, 3991, 5002
BstZI CGGCCG 1 cut(s) 269
Bsu36I CCTNAGG 2 cut(s) 429, 742
BsuI GTATCC 2 cut(s) 1480, 4415
BtgI CCRYGG 3 cut(s) 81, 1221, 3097
BtgZI GCGATG 2 cut(s) 103, 2144
BtsI GCAGTG 2 cut(s) 3093, 3784
BtsIMutI CAGTG 9 cut(s) 694, 1707, 2957, 3093, 3416, 3432, 3579, 3784, 3927
BveI ACCTGC 4 cut(s) 1465, 2200, 2843, 3602
CaiI CAGNNNCTG 4 cut(s) 1706, 2837, 3617, 5006
CciI TCATGA 2 cut(s) 876, 3370
CfoI GCGC 5 cut(s) 88, 115, 1741, 2375, 4284
Cfr10I RCCGGY 2 cut(s) 132, 1061
Cfr9I CCCGGG 1 cut(s) 392
CseI GACGC 2 cut(s) 1863, 4495
Csp6I GTAC 7 cut(s) 1233, 2709, 3080, 3203, 4175, 4589, 4639
CspAI ACCGGT 1 cut(s) 132
CspCI CAANNNNNGTGG 2 cut(s) 3712, 3747
CviQI GTAC 7 cut(s) 1233, 2709, 3080, 3203, 4175, 4589, 4639
DraI TTTAAA 1 cut(s) 2467
DraIII CACNNNGTG 2 cut(s) 2771, 3128
DriI GACNNNNNGTC 1 cut(s) 3562
EaeI YGGCCR 3 cut(s) 269, 547, 4620
EagI CGGCCG 1 cut(s) 269
Eam1104I CTCTTC 3 cut(s) 1032, 2170, 3384
Eam1105I GACNNNNNGTC 1 cut(s) 3562
EarI CTCTTC 3 cut(s) 1032, 2170, 3384
EciI GGCGGA 1 cut(s) 133
EclXI CGGCCG 1 cut(s) 269
Eco130I CCWWGG 7 cut(s) 814, 1221, 1510, 2405, 3097, 3187, 3513
Eco147I AGGCCT 1 cut(s) 427
Eco24I GRGCYC 2 cut(s) 581, 678
Eco31I GGTCTC 3 cut(s) 1234, 3386, 4130
Eco32I GATATC 1 cut(s) 2575
Eco47I GGWCC 6 cut(s) 77, 1100, 1663, 2148, 3141, 4428
Eco52I CGGCCG 1 cut(s) 269
Eco57I CTGAAG 8 cut(s) 1094, 1358, 3291, 3408, 3819, 4191, 4202, 4532
Eco72I CACGTG 2 cut(s) 284, 632
Eco81I CCTNAGG 2 cut(s) 429, 742
Eco88I CYCGRG 1 cut(s) 392
EcoO109I RGGNCCY 5 cut(s) 77, 1663, 2148, 3141, 4428
EcoRI GAATTC 3 cut(s) 568, 2281, 3856
EcoRV GATATC 1 cut(s) 2575
EcoT14I CCWWGG 7 cut(s) 814, 1221, 1510, 2405, 3097, 3187, 3513
EcoT38I GRGCYC 2 cut(s) 581, 678
ErhI CCWWGG 7 cut(s) 814, 1221, 1510, 2405, 3097, 3187, 3513
FauI CCCGC 2 cut(s) 2188, 4469
FbaI TGATCA 2 cut(s) 1446, 1968
FriOI GRGCYC 2 cut(s) 581, 678
FspI TGCGCA 1 cut(s) 1740
GlaI GCGC 5 cut(s) 87, 114, 1740, 2374, 4283
GsaI CCCAGC 1 cut(s) 77
GsuI CTGGAG 4 cut(s) 272, 1011, 1184, 3479
HaeII RGCGCY 1 cut(s) 4285
HapII CCGG 7 cut(s) 133, 268, 393, 728, 863, 1062, 2929
HgaI GACGC 2 cut(s) 1863, 4495
HhaI GCGC 5 cut(s) 88, 115, 1741, 2375, 4284
Hin1I GRCGYC 2 cut(s) 2067, 4506
Hin6I GCGC 5 cut(s) 86, 113, 1739, 2373, 4282
HinP1I GCGC 5 cut(s) 86, 113, 1739, 2373, 4282
HincII GTYRAC 2 cut(s) 859, 3454
HindII GTYRAC 2 cut(s) 859, 3454
HindIII AAGCTT 2 cut(s) 2270, 2427
HpaII CCGG 7 cut(s) 133, 268, 393, 728, 863, 1062, 2929
Hpy166II GTNNAC 6 cut(s) 176, 859, 925, 938, 3454, 4916
Hpy8I GTNNAC 6 cut(s) 176, 859, 925, 938, 3454, 4916
HpyCH4IV ACGT 5 cut(s) 283, 631, 1580, 2067, 2808
HpyF10VI GCNNNNNNNGC 6 cut(s) 992, 1871, 2083, 2696, 3602, 4198
HpySE526I ACGT 5 cut(s) 283, 631, 1580, 2067, 2808
Hsp92I GRCGYC 2 cut(s) 2067, 4506
HspAI GCGC 5 cut(s) 86, 113, 1739, 2373, 4282
KflI GGGWCCC 3 cut(s) 77, 2148, 4428
Ksp22I TGATCA 2 cut(s) 1446, 1968
LguI GCTCTTC 1 cut(s) 2170
LmnI GCTCC 6 cut(s) 477, 1203, 1465, 2180, 3227, 5061
MaeII ACGT 5 cut(s) 283, 631, 1580, 2067, 2808
MfeI CAATTG 1 cut(s) 2051
MflI RGATCY 6 cut(s) 1492, 1801, 2365, 3040, 3991, 5002
MhlI GDGCHC 6 cut(s) 482, 581, 678, 2253, 3583, 4149
MlsI TGGCCA 1 cut(s) 549
MluNI TGGCCA 1 cut(s) 549
MmeI TCCRAC 1 cut(s) 45
Mox20I TGGCCA 1 cut(s) 549
MroXI GAANNNNTTC 2 cut(s) 35, 4361
MscI TGGCCA 1 cut(s) 549
MslI CAYNNNNRTG 4 cut(s) 19, 4731, 4821, 5021
Msp20I TGGCCA 1 cut(s) 549
MspA1I CMGCKG 3 cut(s) 1368, 2834, 4476
MspI CCGG 7 cut(s) 133, 268, 393, 728, 863, 1062, 2929
MunI CAATTG 1 cut(s) 2051
Mva1269I GAATGC 6 cut(s) 463, 1700, 1761, 2653, 2758, 5028
MvnI CGCG 2 cut(s) 88, 113
MwoI GCNNNNNNNGC 6 cut(s) 992, 1871, 2083, 2696, 3602, 4198
NciI CCSGG 4 cut(s) 393, 394, 863, 2930
NcoI CCATGG 2 cut(s) 1221, 3097
NmeAIII GCCGAG 3 cut(s) 141, 172, 3190
NsbI TGCGCA 1 cut(s) 1740
NspI RCATGY 4 cut(s) 196, 625, 3015, 3346
NspV TTCGAA 1 cut(s) 662
PagI TCATGA 2 cut(s) 876, 3370
PaqCI CACCTGC 2 cut(s) 2200, 3602
PasI CCCWGGG 2 cut(s) 574, 2621
PceI AGGCCT 1 cut(s) 427
PciI ACATGT 2 cut(s) 192, 3011
PciSI GCTCTTC 1 cut(s) 2170
PcsI WCGNNNNNNNCGW 2 cut(s) 2725, 4334
PctI GAATGC 6 cut(s) 463, 1700, 1761, 2653, 2758, 5028
PdmI GAANNNNTTC 2 cut(s) 35, 4361
PflFI GACNNNGTC 1 cut(s) 703
PflMI CCANNNNNTGG 2 cut(s) 170, 815
PfoI TCCNGGA 2 cut(s) 1567, 4407
PinAI ACCGGT 1 cut(s) 132
PmaCI CACGTG 2 cut(s) 284, 632
PmlI CACGTG 2 cut(s) 284, 632
Ppu21I YACGTR 2 cut(s) 284, 632
PpuMI RGGWCCY 5 cut(s) 77, 1663, 2148, 3141, 4428
PscI ACATGT 2 cut(s) 192, 3011
PshAI GACNNNNGTC 1 cut(s) 1368
PshBI ATTAAT 1 cut(s) 3399
PsiI TTATAA 2 cut(s) 333, 1158
Psp5II RGGWCCY 5 cut(s) 77, 1663, 2148, 3141, 4428
PspCI CACGTG 2 cut(s) 284, 632
PspFI CCCAGC 1 cut(s) 73
PspOMI GGGCCC 1 cut(s) 674
PspPPI RGGWCCY 5 cut(s) 77, 1663, 2148, 3141, 4428
PsrI GAACNNNNNNTAC 2 cut(s) 4279, 4311
PstI CTGCAG 3 cut(s) 3999, 4235, 4648
PstNI CAGNNNCTG 4 cut(s) 1706, 2837, 3617, 5006
PsuI RGATCY 6 cut(s) 1492, 1801, 2365, 3040, 3991, 5002
PsyI GACNNNGTC 1 cut(s) 703
PvuII CAGCTG 2 cut(s) 1368, 2834
RsaI GTAC 7 cut(s) 1234, 2710, 3081, 3204, 4176, 4590, 4640
RsaNI GTAC 7 cut(s) 1233, 2709, 3080, 3203, 4175, 4589, 4639
RseI CAYNNNNRTG 4 cut(s) 19, 4731, 4821, 5021
SapI GCTCTTC 1 cut(s) 2170
SduI GDGCHC 6 cut(s) 482, 581, 678, 2253, 3583, 4149
SfcI CTRYAG 4 cut(s) 3939, 3995, 4231, 4644
SfuI TTCGAA 1 cut(s) 662
SinI GGWCC 6 cut(s) 77, 1100, 1663, 2148, 3141, 4428
SmaI CCCGGG 1 cut(s) 394
SmiMI CAYNNNNRTG 4 cut(s) 19, 4731, 4821, 5021
SmlI CTYRAG 2 cut(s) 652, 4541
SmoI CTYRAG 2 cut(s) 652, 4541
SpeI ACTAGT 1 cut(s) 2900
SseBI AGGCCT 1 cut(s) 427
SsiI CCGC 9 cut(s) 5, 144, 161, 461, 1996, 2131, 2195, 2447, 4476
StuI AGGCCT 1 cut(s) 427
StyI CCWWGG 7 cut(s) 814, 1221, 1510, 2405, 3097, 3187, 3513
TaiI ACGT 5 cut(s) 286, 634, 1583, 2070, 2811
TaqI TCGA 3 cut(s) 232, 662, 2487
TatI WGTACW 5 cut(s) 1232, 2708, 3079, 4174, 4588
TauI GCSGC 4 cut(s) 7, 163, 1999, 2450
TscAI CASTG 9 cut(s) 694, 1707, 2964, 3093, 3423, 3432, 3579, 3784, 3927
TspGWI ACGGA 2 cut(s) 2060, 4343
TspMI CCCGGG 1 cut(s) 392
TspRI CASTG 9 cut(s) 694, 1707, 2964, 3093, 3423, 3432, 3579, 3784, 3927
Tth111I GACNNNGTC 1 cut(s) 703
Van91I CCANNNNNTGG 2 cut(s) 170, 815
VpaK11BI GGWCC 6 cut(s) 77, 1100, 1663, 2148, 3141, 4428
VspI ATTAAT 1 cut(s) 3399
XbaI TCTAGA 1 cut(s) 3460
XceI RCATGY 4 cut(s) 196, 625, 3015, 3346
XcmI CCANNNNNNNNNTGG 1 cut(s) 816
XmaI CCCGGG 1 cut(s) 392
XmnI GAANNNNTTC 2 cut(s) 35, 4361
ZraI GACGTC 1 cut(s) 2068
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.