Rorug01G0309700
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0005694
Physical Location & Seq
Forward (+)
42607092 .. 42607656
565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0309700.1

Sequence Viewer

Length: 246 bp
ATGAGCGGAGGCGGCATGGAAGCGGTGTCCTCTAGGCCACAAGAGGCGAATGGCCAGCACAAGCGAGAGAGGTGTGGTGGCTATTTTCAGATGCCTCTGCACTATCCAAGGTACAAAAAATCGGACTACGAGATCATGCCGGAATGGAAGCTGGATTGTCTGCTCAAACAGTATGGACTTCAAGTCACTGGAGATGTTGAGCAGAAGAGGAAGTTTGCTATGGGAACTTTCTTGTGGTCTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000226 GO:0000228 GO:0000785 GO:0000790 GO:0000981 GO:0001067 GO:0001085 GO:0001102 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0003714 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005874 GO:0005876 GO:0006109 GO:0006110 GO:0006139 GO:0006140 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009966 GO:0009968 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0015630 GO:0016043 GO:0016070 GO:0016922 GO:0017053 GO:0018130 GO:0019216 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019899 GO:0022402 GO:0022607 GO:0023051 GO:0023057 GO:0030808 GO:0030811 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032368 GO:0032774 GO:0032872 GO:0032873 GO:0032879 GO:0032890 GO:0032991 GO:0033613 GO:0034641 GO:0034645 GO:0034654 GO:0035257 GO:0042325 GO:0042326 GO:0042826 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043408 GO:0043409 GO:0043467 GO:0043470 GO:0044070 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0045936 GO:0046328 GO:0046329 GO:0046483 GO:0046966 GO:0048511 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051172 GO:0051174 GO:0051193 GO:0051196 GO:0051225 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051427 GO:0060147 GO:0060149 GO:0060255 GO:0060964 GO:0060965 GO:0060966 GO:0060967 GO:0060968 GO:0060969 GO:0062012 GO:0065007 GO:0070013 GO:0070302 GO:0070303 GO:0070920 GO:0070925 GO:0071704 GO:0071840 GO:0072361 GO:0072362 GO:0072367 GO:0072368 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0097659 GO:0098679 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140110 GO:1900371 GO:1900402 GO:1900542 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:1903578 GO:1903798 GO:1903799 GO:1905952 GO:2000112 GO:2000113 GO:2000191 GO:2001141 GO:2001169
KEGG Pathways
Metabolic & Signaling
ko01522 ko04919 ko05202 map01522 map04919 map05202
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

81

Amino Acids

9.42

Weight (kDa)

8.98

Isoelectric Point (pI)

65.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 35 - 80 2.4e-29 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 6
AciI CCGC 3 cut(s) 6, 12, 23
AcoI YGGCCR 1 cut(s) 52
AfaI GTAC 1 cut(s) 113
AgsI TTSAA 1 cut(s) 182
AhdI GACNNNNNGTC 1 cut(s) 182
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
AoxI GGCC 2 cut(s) 35, 52
BalI TGGCCA 1 cut(s) 54
BfaI CTAG 2 cut(s) 33, 244
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
BmeRI GACNNNNNGTC 1 cut(s) 182
BmsI GCATC 1 cut(s) 81
BpmI CTGGAG 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 107
BseNI ACTGG 1 cut(s) 193
BsgI GTGCAG 1 cut(s) 83
BshFI GGCC 2 cut(s) 37, 54
BsiSI CCGG 1 cut(s) 140
BsnI GGCC 2 cut(s) 37, 54
Bsp143I GATC 1 cut(s) 132
BspACI CCGC 3 cut(s) 6, 12, 23
BspANI GGCC 2 cut(s) 37, 54
BsrBI CCGCTC 1 cut(s) 6
BsrI ACTGG 1 cut(s) 193
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 107
Bst4CI ACNGT 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 56
BstKTI GATC 1 cut(s) 135
BstMBI GATC 1 cut(s) 132
BstMWI GCNNNNNNNGC 1 cut(s) 12
BsuRI GGCC 2 cut(s) 37, 54
BtsIMutI CAGTG 1 cut(s) 186
Cac8I GCNNGC 1 cut(s) 56
Csp6I GTAC 1 cut(s) 112
CviAII CATG 2 cut(s) 16, 136
CviJI RGCY 4 cut(s) 37, 54, 81, 151
CviKI_1 RGCY 4 cut(s) 37, 54, 81, 151
CviQI GTAC 1 cut(s) 112
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
DriI GACNNNNNGTC 1 cut(s) 182
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 200
Eam1105I GACNNNNNGTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 107
ErhI CCWWGG 1 cut(s) 107
FaeI CATG 2 cut(s) 19, 139
FaiI YATR 4 cut(s) 17, 137, 174, 221
FatI CATG 2 cut(s) 15, 135
Fnu4HI GCNGC 1 cut(s) 13
Fsp4HI GCNGC 1 cut(s) 13
FspBI CTAG 2 cut(s) 33, 244
GluI GCNGC 1 cut(s) 13
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 2 cut(s) 37, 54
HapII CCGG 1 cut(s) 140
Hin1II CATG 2 cut(s) 19, 139
HpaII CCGG 1 cut(s) 140
Hpy188I TCNGA 2 cut(s) 90, 124
HpyCH4III ACNGT 1 cut(s) 171
HpyCH4V TGCA 1 cut(s) 100
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
Hsp92II CATG 2 cut(s) 19, 139
Kzo9I GATC 1 cut(s) 132
LpnPI CCDG 4 cut(s) 68, 137, 153, 174
LweI GCATC 1 cut(s) 81
MaeI CTAG 2 cut(s) 33, 244
MaeIII GTNAC 1 cut(s) 184
MalI GATC 1 cut(s) 134
MbiI CCGCTC 1 cut(s) 6
MboI GATC 1 cut(s) 132
MboII GAAGA 1 cut(s) 217
MlsI TGGCCA 1 cut(s) 54
MluNI TGGCCA 1 cut(s) 54
MnlI CCTC 5 cut(s) 37, 40, 63, 105, 201
Mox20I TGGCCA 1 cut(s) 54
MscI TGGCCA 1 cut(s) 54
Msp20I TGGCCA 1 cut(s) 54
MspI CCGG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 12
NdeII GATC 1 cut(s) 132
NlaIII CATG 2 cut(s) 19, 139
NmuCI GTSAC 1 cut(s) 184
PkrI GCNGC 1 cut(s) 14
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SatI GCNGC 1 cut(s) 13
Sau3AI GATC 1 cut(s) 132
SetI ASST 3 cut(s) 74, 113, 153
SfaNI GCATC 1 cut(s) 81
SsiI CCGC 3 cut(s) 6, 12, 23
SspMI CTAG 2 cut(s) 33, 244
StyI CCWWGG 1 cut(s) 107
TaaI ACNGT 1 cut(s) 171
TauI GCSGC 1 cut(s) 15
TscAI CASTG 1 cut(s) 193
TseFI GTSAC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 184
TspRI CASTG 1 cut(s) 193
XspI CTAG 2 cut(s) 33, 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.