Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0005694

Physical Location & Seq

Genomic Coordinates Forward (+)

17678355 .. 17679530

Gene Structure 1176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1111400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGCCGCCAGAACCATTGCCTTGGGATCGGAAAGACTTCTTCAAGGAGAGGAAGCACGAGAGGTCGGAGTCCCTTGGCTCTGTGGCACGATGGAGGGACTCGCCCCATCATGCACCTCGCGACTTCAATCGTTGGGCTTCCGGCGATTTTCGCAGACCACCAGGTCATGGTAAGCAGGGTGGTTGGCACGTGTTCTCCGATGATTCTGGTCATGGGTATGGATCGTCTCGGTCAGGCGATAAGATGGTGGAAGATGAGAGCTTCCGGCCATCATTTTCACGAGGAGATGGAAGGTATGGCAGGAACAGTAGGGATAATAGAGGGCCACCTTATAGCCAGAGGGAAAGTAAAGGCTATTCTTGGGAAACCAGAAGTGGGTCTCCAAACATGCCCGGGAGGCCAAATCGTGTGAATAATGAACAGAGGTCGCAGGATGATATGCTGACATACTCATCTCATCAACAGTCTGACTTTGGAAGCACATGGGATCAGATTCAATTGAAAGACCAGCTTGATAAAATGGGTGGTTCCACTGGTTTAGGCTCTGGCCAGAAATGTGAGAGAGAGAGAACTCATTGGTCTCAATTGATTGGAAGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000226 GO:0000228 GO:0000785 GO:0000790 GO:0000981 GO:0001067 GO:0001085 GO:0001102 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0003714 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005874 GO:0005876 GO:0006109 GO:0006110 GO:0006139 GO:0006140 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009966 GO:0009968 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0015630 GO:0016043 GO:0016070 GO:0016922 GO:0017053 GO:0018130 GO:0019216 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019899 GO:0022402 GO:0022607 GO:0023051 GO:0023057 GO:0030808 GO:0030811 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032368 GO:0032774 GO:0032872 GO:0032873 GO:0032879 GO:0032890 GO:0032991 GO:0033613 GO:0034641 GO:0034645 GO:0034654 GO:0035257 GO:0042325 GO:0042326 GO:0042826 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043408 GO:0043409 GO:0043467 GO:0043470 GO:0044070 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0045936 GO:0046328 GO:0046329 GO:0046483 GO:0046966 GO:0048511 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051172 GO:0051174 GO:0051193 GO:0051196 GO:0051225 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051427 GO:0060147 GO:0060149 GO:0060255 GO:0060964 GO:0060965 GO:0060966 GO:0060967 GO:0060968 GO:0060969 GO:0062012 GO:0065007 GO:0070013 GO:0070302 GO:0070303 GO:0070920 GO:0070925 GO:0071704 GO:0071840 GO:0072361 GO:0072362 GO:0072367 GO:0072368 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0097659 GO:0098679 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140110 GO:1900371 GO:1900402 GO:1900542 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:1903578 GO:1903798 GO:1903799 GO:1905952 GO:2000112 GO:2000113 GO:2000191 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

ko01522 ko04919 ko05202 map01522 map04919 map05202

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

201

Amino Acids

22.92

Weight (kDa)

9.29

Isoelectric Point (pI)

62.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005694)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52250 AT3G52250
fragaria_vesca	FvH4_7g19850 FvH4_7g19850 FvH4_7g19850 FvH4_7g19850
malus_domestica	MD01G1110800.v1.1 MD07G1176800.v1.1 MD12G1111400.v1.1 MD12G1111500.v1.1
prunus_persica	Prupe.2G215600_v2.0.a1 Prupe.2G215600_v2.0.a1
pyrus_communis	pycom01g13790 pycom01g13800 pycom01g13810 pycom07g17090
rosa_chinensis	RchiOBHm_Chr1g0363841
rosa_laevigata	RLG00000027542
rosa_multiflora	Rmu_sc0002483.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292930
rosa_rugosa	Rorug01G0309600 Rorug01G0309700
rosa_samantha	Rh1AG318200 Rh1BG281400 Rh1CG297800 Rh1DG312700 Rh4AG037100
rosa_wichuraiana	Rw1G028240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	162
AccB7I	CCANNNNNTGG	1 cut(s)	167
AccII	CGCG	1 cut(s)	120
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	3 cut(s)	33, 229, 495
AcoI	YGGCCR	2 cut(s)	266, 547
AcvI	CACGTG	1 cut(s)	190
AfiI	CCNNNNNNNGG	2 cut(s)	167, 375
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	4 cut(s)	43, 127, 497, 502
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	2 cut(s)	261, 511
AluI	AGCT	2 cut(s)	261, 511
Alw26I	GTCTC	3 cut(s)	231, 384, 585
AlwI	GGATC	3 cut(s)	33, 229, 495
Ama87I	CYCGRG	1 cut(s)	392
AoxI	GGCC	4 cut(s)	266, 323, 398, 547
Asp700I	GAANNNNTTC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	323
AsuC2I	CCSGG	2 cut(s)	393, 394
AvaI	CYCGRG	1 cut(s)	392
BalI	TGGCCA	1 cut(s)	549
BauI	CACGAG	2 cut(s)	56, 279
BbrPI	CACGTG	1 cut(s)	190
BccI	CCATC	5 cut(s)	84, 114, 238, 277, 281
BciT130I	CCWGG	1 cut(s)	162
BcnI	CCSGG	2 cut(s)	393, 394
BcoDI	GTCTC	3 cut(s)	231, 384, 585
BglI	GCCNNNNNGGC	1 cut(s)	397
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	3 cut(s)	162, 393, 394
BmeT110I	CYCGRG	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	1 cut(s)	529
BmrFI	CCNGG	3 cut(s)	162, 393, 394
BpuMI	CCSGG	2 cut(s)	393, 394
BsaAI	YACGTR	1 cut(s)	190
BsaI	GGTCTC	2 cut(s)	384, 585
BsaJI	CCNNGG	3 cut(s)	20, 73, 392
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 375
Bse1I	ACTGG	1 cut(s)	538
Bse3DI	GCAATG	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	3 cut(s)	20, 73, 392
BseGI	GGATG	1 cut(s)	439
BseLI	CCNNNNNNNGG	2 cut(s)	167, 375
BseMI	GCAATG	1 cut(s)	14
BseNI	ACTGG	1 cut(s)	538
BseRI	GAGGAG	1 cut(s)	297
Bsh1236I	CGCG	1 cut(s)	120
BshFI	GGCC	4 cut(s)	268, 325, 400, 549
BsiHKCI	CYCGRG	1 cut(s)	392
BsiSI	CCGG	3 cut(s)	141, 265, 393
BslFI	GGGAC	2 cut(s)	55, 110
BslI	CCNNNNNNNGG	2 cut(s)	167, 375
BsmAI	GTCTC	3 cut(s)	231, 384, 585
BsmBI	CGTCTC	1 cut(s)	231
BsmFI	GGGAC	2 cut(s)	55, 110
BsnI	GGCC	4 cut(s)	268, 325, 400, 549
Bso31I	GGTCTC	2 cut(s)	384, 585
BsoBI	CYCGRG	1 cut(s)	392
Bsp143I	GATC	3 cut(s)	25, 221, 487
Bsp68I	TCGCGA	1 cut(s)	120
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	4 cut(s)	268, 325, 400, 549
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	529
BspPI	GGATC	3 cut(s)	33, 229, 495
BspTNI	GGTCTC	2 cut(s)	384, 585
BsrDI	GCAATG	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	538
BssECI	CCNNGG	3 cut(s)	20, 73, 392
BssMI	GATC	3 cut(s)	25, 221, 487
BssSI	CACGAG	2 cut(s)	56, 279
BssT1I	CCWWGG	2 cut(s)	20, 73
Bst2BI	CACGAG	2 cut(s)	56, 279
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	308, 465
BstBAI	YACGTR	1 cut(s)	190
BstF5I	GGATG	1 cut(s)	439
BstFNI	CGCG	1 cut(s)	120
BstKTI	GATC	3 cut(s)	28, 224, 490
BstMAI	GTCTC	3 cut(s)	231, 384, 585
BstMBI	GATC	3 cut(s)	25, 221, 487
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 397
BstNI	CCWGG	1 cut(s)	162
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	3 cut(s)	160, 391, 392
BstUI	CGCG	1 cut(s)	120
BstXI	CCANNNNNNTGG	1 cut(s)	21
BsuRI	GGCC	4 cut(s)	268, 325, 400, 549
BtsCI	GGATG	1 cut(s)	439
BtsIMutI	CAGTG	1 cut(s)	531
BtuMI	TCGCGA	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	323
Cfr9I	CCCGGG	1 cut(s)	392
CsiI	ACCWGGT	1 cut(s)	160
CviAII	CATG	5 cut(s)	110, 167, 212, 388, 483
DpnI	GATC	3 cut(s)	27, 223, 489
DpnII	GATC	3 cut(s)	25, 221, 487
DrdI	GACNNNNNNGTC	1 cut(s)	162
DseDI	GACNNNNNNGTC	1 cut(s)	162
EaeI	YGGCCR	2 cut(s)	266, 547
Eco130I	CCWWGG	2 cut(s)	20, 73
Eco31I	GGTCTC	2 cut(s)	384, 585
Eco72I	CACGTG	1 cut(s)	190
Eco88I	CYCGRG	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	2 cut(s)	20, 73
ErhI	CCWWGG	2 cut(s)	20, 73
Esp3I	CGTCTC	1 cut(s)	231
FaeI	CATG	5 cut(s)	113, 170, 215, 391, 486
FalI	AAGNNNNNCTT	2 cut(s)	495, 527
FaqI	GGGAC	2 cut(s)	55, 110
FatI	CATG	5 cut(s)	109, 166, 211, 387, 482
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	4 cut(s)	268, 325, 400, 549
HapII	CCGG	3 cut(s)	141, 265, 393
Hin1II	CATG	5 cut(s)	113, 170, 215, 391, 486
HinfI	GANTC	4 cut(s)	68, 98, 203, 493
HpaII	CCGG	3 cut(s)	141, 265, 393
Hpy188I	TCNGA	5 cut(s)	30, 67, 199, 469, 492
Hpy188III	TCNNGA	2 cut(s)	119, 279
HpyAV	CCTTC	1 cut(s)	285
HpyCH4III	ACNGT	2 cut(s)	308, 465
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	1 cut(s)	113
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 397
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	5 cut(s)	113, 170, 215, 391, 486
Kzo9I	GATC	3 cut(s)	25, 221, 487
MabI	ACCWGGT	1 cut(s)	160
MaeII	ACGT	1 cut(s)	189
MalI	GATC	3 cut(s)	27, 223, 489
MboI	GATC	3 cut(s)	25, 221, 487
MboII	GAAGA	2 cut(s)	31, 263
MfeI	CAATTG	2 cut(s)	497, 584
MlsI	TGGCCA	1 cut(s)	549
MluCI	AATT	2 cut(s)	497, 584
MluNI	TGGCCA	1 cut(s)	549
MlyI	GAGTC	2 cut(s)	77, 92
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	9 cut(s)	42, 54, 87, 126, 275, 314, 333, 390, 417
Mox20I	TGGCCA	1 cut(s)	549
MroXI	GAANNNNTTC	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	549
MslI	CAYNNNNRTG	1 cut(s)	216
Msp20I	TGGCCA	1 cut(s)	549
MspI	CCGG	3 cut(s)	141, 265, 393
MspR9I	CCNGG	3 cut(s)	162, 393, 394
MunI	CAATTG	2 cut(s)	497, 584
MvaI	CCWGG	1 cut(s)	162
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	150, 397
NciI	CCSGG	2 cut(s)	393, 394
NdeII	GATC	3 cut(s)	25, 221, 487
NlaIII	CATG	5 cut(s)	113, 170, 215, 391, 486
NlaIV	GGNNCC	1 cut(s)	529
NruI	TCGCGA	1 cut(s)	120
NspI	RCATGY	1 cut(s)	391
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	2 cut(s)	203, 493
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	2 cut(s)	76, 92
PmaCI	CACGTG	1 cut(s)	190
PmlI	CACGTG	1 cut(s)	190
PpsI	GAGTC	2 cut(s)	76, 92
Ppu21I	YACGTR	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	160
PspCI	CACGTG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	529
PspPI	GGNCC	1 cut(s)	323
RruI	TCGCGA	1 cut(s)	120
RseI	CAYNNNNRTG	1 cut(s)	216
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	3 cut(s)	25, 221, 487
Sau96I	GGNCC	1 cut(s)	323
SchI	GAGTC	2 cut(s)	77, 92
ScrFI	CCNGG	3 cut(s)	162, 393, 394
SetI	ASST	9 cut(s)	65, 118, 166, 192, 263, 296, 331, 428, 513
SexAI	ACCWGGT	1 cut(s)	160
SmaI	CCCGGG	1 cut(s)	394
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	2 cut(s)	497, 584
SsiI	CCGC	1 cut(s)	5
StyD4I	CCNGG	3 cut(s)	160, 391, 392
StyI	CCWWGG	2 cut(s)	20, 73
TaaI	ACNGT	2 cut(s)	308, 465
TaiI	ACGT	1 cut(s)	192
TaqII	GACCGA	1 cut(s)	219
TasI	AATT	2 cut(s)	497, 584
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	203, 493
TscAI	CASTG	1 cut(s)	538
TspDTI	ATGAA	1 cut(s)	432
TspMI	CCCGGG	1 cut(s)	392
TspRI	CASTG	1 cut(s)	538
Van91I	CCANNNNNTGG	1 cut(s)	167
XceI	RCATGY	1 cut(s)	391
XmaI	CCCGGG	1 cut(s)	392
XmnI	GAANNNNTTC	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.