MD01G1110800.v1.1
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0005694
Physical Location & Seq
Forward (+)
22349174 .. 22356483
7310 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1110800.v1.1.491

Sequence Viewer

Length: 5085 bp
ATGCCGCCAGAACCATTGCCTTGGGATCGGAAAGACTTCTTCAAGGAGAGGAAGCACGAGAGGTCGGAGTCCCTTGGCTCTGTGGCACGATGGAGGGACTCGCCCCATCATGCACCTCGCGACTTCAATCGTTGGCCTTCCGGCGATTTTCGCAGACCGCCAGGTCATGGTAAGCAGGGTGCTTGGCACGTGTTTTCCGATGATTCTGGTCATGGGTATGGATCGTCTCGGTCTGGTGATAAGATGCTGGAAGATGAGAGCTTCAGGCCATCATTTTCACGCGGAGACGGAAGGTATGGCAGGAACAGTAGGGATAATAGAGGGCCACCTTACAGCCAGAGGGAAGGTAAAGGCCATTCTTGGGATGCCAGAAGTGGGTCTCCAAACATGCCTGTGAGGCCAAATCATAATGAACAGAAGTCACAGGATGATATGCTGACATACTCATCTCATCAACCTTCCGATTTTGGAAGTACGTGGGATCAGATTCAATTGAAAGACCAGCTTGATAGAATGGGTGGTTCCACTGGTTTAGGTGCTGGCCAGAAATGTGAGAGAGAGAACTCATTGGGCTCAATTGATTGGAAGCCTCTTAAATGGACAAGGTCTGGAAGCTTGTCTTCTCGGGTTTCTGGTTTCAGCCATTCAAGTAGCTCAAAAAGCATGGGGCTCGTTGATTCCAATGAAGCAAAGGTTGATTCACAGCCGAAAAATGCCACTCCAGTGCAGTCTCCTTCTGGAGAAGCTACTACCGGTGTGACATCTGCTGCACCATCAGAGGAAACAAATTCTAGGAAGAAGCCACGCCTTGGATGGGGTGAGGGATTGGCAAAGTATGAGAAAAAGAAAGTCGAGGTCCCTGATGGTAGCATGAACAATGATGGAGCTGTCTGTTCTGTTGGTAACACCGAACCTGCTCATTCTTTGAGTTCAAGCTTGCCAGATAAAAGCCCTAGAGTCACAATGTTCTCAGATTGTGCATCTCCTGCAACTCCATCCTCTGTTGTTTGCAGTTCTTCTCCAGGTGTGGAGGAGAAATCATTTTGCAAGGCAGTAAATATTGATAACGATATTAGAAACTTTTGTGGTTCCCCAGGTCATATGTCCCAGAGTCATCATGAGGGATTCTCATTCCAATTGGAAAAGTTGGATAGTAATTCTATAGTTAACTTGGACTCATCACTACTGGAATTGCTTCAGTCTGATGATCCAAGTTCTGTGGATTCTAGTATCCGGAGACCTACTGCATTGAACAAGTTGCTCATATGGAAAGGTGAGATTTCAAAAGTACTGGAGGTTACTGAGTTGGAAATTGATTCACTTGAAAACGAACTTAAGGCACTGAACTCTGATTCTGGGGGCAGCTGCCCCCGTCCAGCAACTTCTAGTTCTTTGCCTGTGGAGGACAAGGATAAATCTTGCAAGGAACACGTCACAAATTTGATTACTCTGCCTACTGCATTGCAAATTCATTCTTCTGGGGACACTGATGTGCAGAAAATGTGTGTTGACAACAGGGACCAGGTAGAGTTCTGCGGTATTGTCAACGATGAGGATATTGATAGTCCTGGAACAGCTACATCGAAATTTGTTGAGTCATTGCCGTTGGTTTCTTCATCTGATATGATGAATCAAACTGATTGTTCTGAAGATTGGGATCCAATCCAGACAACCATAGGGGAAGAGACATGCTCAGTGCCCTGCAGATGTACAGAAAAGACTGACCCGTCTACTTGTGGAAATAGTAGCATGCTATTGGATAAGGAGATAGTTGCACCGGCGTGTGGTGTGGTAGATAAGTTATCTGATTCTATATTTTCTGCCAATAAAGAATTTGCAAGTAGAGCATCTGACATATTTAGTAAGCTGTTAACAAAAGAGCAATATGAGGTTGATCCATCTGGAGTAAGTGTTCCATCATCCTGGAAGAATGATACATTGATCAAAGAGAAGTTTGCCAAGAGGAAGCGACATCTGAGGTTTATGGAGAGAGTTATAACCTTAAAATTTAAAGCCTTTCAACACTTGTGGAAGGAAGACATGCATTTGCTTTCCATGCGAAAATATCGTTCAAAATCTCACAAAAACATTGAGTTGAGCTTGCGAGCAAGTAATAATGGGCATCAGAAGCATCGATCTTCAATTCGATCTCGATTTTCTACACCTGGAAGTCTGAACCTGGTCCCTACCACAGAGACGATTAATTTCACTAACAAGTTGCTGTCAGATTCCCAAGTCAAGCTGTACCGGAACTCGTTGAAGATGCCGGCCTTAATCTTGGACAAAAAGGAGAAGATGGCGACAAGATTTGTTTCTAGTAATGGTTTAGTTGAAGATCCCTGTGCTGTTGAGAAGGAAAGGGCTTTGATGAACCCATGGATGCCAGAAGAGAAAGAACTTTTCATCCAAAAGCTAACCATCTATGGGAAGGATTTCAGGAAAATTGCTTCGTTTCTTGATCACAAGACGACTGCTGACTGTGTTGAGTTTTACTACAAAAACCACAAGTCTGATTGCTTTAAGAAAGCAAAGAAGAAACCTGATTTGGCTAAACAAGAAAAGTCCTCGGCTAATACCTACTTAATTTCAAATGGGAAAAAATGGAATCGTGAGATGCATGCTGCTTCCCTTGATATTTTGGGTGCTGCTTCAGAAATTGCAGCTCATGCTGAAAGTAGTACAAGAAATCGACAGACATATTCGAGAAGGTTAATTTTGGGAGGGTACAAGAATACCAATACGTCTCATGGTGATGATACTATGGTTGAAAGGCCTTGCAGTTTTGATACTTTTGGCAATGAAAGAGAAACAGCTGCTGCTGATGTTTTAGCAGGTATATGTGGCTCAATTTCATCTGAGGCTGTGAGTTCTTGCATCACTAGTTCCATTGATCCTGTTGAGTCTAATCGGGAATGGAAGTGCCAGAAAGTGGATTCCTTAGTAAGGCGACCTTTGACACCTGATTTAATGCATAATGTGGATGATGAGACTTGCTCAGACGAAAGTTGTGGAGAAATGGATCCTTCTGACTGGACAGACGAGGAGAAGTCTAGCTTTATTCAGGCAGTGTCATCCTATGGAAAGGATTTTGCTATGATCTCGCGATGCATTAGATCAAGGTCTCAGCATCAATGCAAGGTTTTCTTTAGCAAGGCTCGGAAGTGCCTTGGCCTTGATTTGGTGCATCCGCAGCCTGGAAATGGAACATCTGTTGGTGATGATGCTAATGGAGGTGGGAGTGACGCTGAAGATGCCTGTGTTCTGGAAACCGGTTCGGGTATTTCCAGTGACAAGTCAGGCTGTAACATGAACGAGGACTTGCCGTCGTCTGTTGCAAACATGAATGACGATGAAGCTGATCCTGCGGAGAGCATGAAATCGCAAACAAGCCCATTCAGACCAGAGGAAAACAATGCGATGGCAGAAGTAGATCATGGAGATGGTAAGCCTCTCAAACTTCTTGCTTTTGGTGATGACACTGATATCATGGATTCCGGTGCTATGGGAGGTAATGTGACTGAAAACGGAATTTTGGTTGCAGAATCACTACCTGTTGGTGAGGGAATCAACTCTGACCCACCTAATCCTGAATGTATGGTTGGGGAAAAATTGGTGGGTCAAAATTATTTTGATCGATTTGGAAAGGAGTTGGAGGGGAGAGATGAAAGGACCAATAGAGATGCAAGTGGATGTCACATACCAGTTTCAGTACACGATTTGTGCGGTAATGCTTCTGACCAGGCAACCGATGGTTCTTGTTCAGGTCTTAACCCTGAGTACCTGCTTGAAGTTTCTGTTGAGCTGAATTCTGTGCAAAAGCCTTCTGTCATCCCATTGCCACTTGAGAATCCTCTTGCGACTGCAGATACAGTGGGACAAGATTCTGCTGCCATTGAATGCGAGAAATCCCTTGACCAAGATAGGTTGTCATCAACCCCGGATCTGCAGGAGGGTAGAGATCATCAGTGTTCTAAATCTATTGGTGAAGATGATAGTCGCAAGCACTTGTCAGGTTTTCCGGTATACACAAATGTTGAACCTTTGCAAGTTATCAGAGGCTATCCATTGCAAATAGCAACCAAGAAAGAGACAAACGGGGATATAAGTTGTGGTAATTTATCTGAAGCTAAGCCAGACAGAAATATCAATGGGCATTATATGACACAAGATGGCTTTCTTCAATTCGGGAATTGTAAGCCTCCATGTCCTGAGGTTGATTTTCCTCCTGTGCCCCTAAAGGTAGAACAACCGGGTGACTCTCGAAAAGCCCTTTCATGGAGTTCGTCAGATTCAGATAAACCAAGCAGGAATGGTGATGTGAAACTATTTGGTAAGATACTTAGCAACCCATCCAAGTCAAGTTCCAGCATCCATGAGAACGAAGAGGGAGCTCATAACCATCAATTAAGCAACAAGGCATCTAACTTAAACTTCACTGGGTATCACAGTGCTGACGGGAATTCTCCCCTACTGAAGTTTGATTGTGGTAGTTATTTGGGCCTTGAGAATGTTCCCAGGAGTAGTTATGGCGGGTTTTGGGAAGGGAATAAAGTGCTAGCTGGTTATCCATCTTTCCCGGACTCAGCTATCTTGCTGGCCAAGTACCCTGCAGCATTTAGCAACTTTCCTACATCCTCATCCCAAATGGAACAGCAGCCACTGCAGGCGGTTGTGAAGACCAGCGATGGGAGTATAAATGGCTTGTCAATTTTTCCTGGCATGGAGATTAATGGTAGCAATGGAGTTGTTGATTATCCGGTGTTTAGCAGAGGTCGGGATGGTGGTGCCAAAGTGCAACCATTTACAGTAGATGTGAAGCAGCAGCGGCAAGACATGTTTGATATTCCAAGACGTAATGGGTTGGATGCAATCACGAGCTTACAGCAGCAAGGGAGGGGGATTGTCGGGATGAATGTCATGGGGAGGGGAGGGATCCTCGTAGGGGGTGCATGCACGGGGGTATCAGATCCCGTGGCCGCCATTAGAATGCTCTATGCAAAAACCGAGCAGTACGGGGGGCAGGCGGGGAGCATTGTCGGGGAGGAAGAGTCGTGGAGAGGGGGCAAAGGGGATATAGGGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000226 GO:0000228 GO:0000785 GO:0000790 GO:0000981 GO:0001067 GO:0001085 GO:0001102 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0003714 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005874 GO:0005876 GO:0006109 GO:0006110 GO:0006139 GO:0006140 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009966 GO:0009968 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0015630 GO:0016043 GO:0016070 GO:0016922 GO:0017053 GO:0018130 GO:0019216 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019899 GO:0022402 GO:0022607 GO:0023051 GO:0023057 GO:0030808 GO:0030811 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032368 GO:0032774 GO:0032872 GO:0032873 GO:0032879 GO:0032890 GO:0032991 GO:0033613 GO:0034641 GO:0034645 GO:0034654 GO:0035257 GO:0042325 GO:0042326 GO:0042826 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043408 GO:0043409 GO:0043467 GO:0043470 GO:0044070 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0045936 GO:0046328 GO:0046329 GO:0046483 GO:0046966 GO:0048511 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051172 GO:0051174 GO:0051193 GO:0051196 GO:0051225 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051427 GO:0060147 GO:0060149 GO:0060255 GO:0060964 GO:0060965 GO:0060966 GO:0060967 GO:0060968 GO:0060969 GO:0062012 GO:0065007 GO:0070013 GO:0070302 GO:0070303 GO:0070920 GO:0070925 GO:0071704 GO:0071840 GO:0072361 GO:0072362 GO:0072367 GO:0072368 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0097659 GO:0098679 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140110 GO:1900371 GO:1900402 GO:1900542 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:1903578 GO:1903798 GO:1903799 GO:1905952 GO:2000112 GO:2000113 GO:2000191 GO:2001141 GO:2001169
KEGG Pathways
Metabolic & Signaling
ko01522 ko04919 ko05202 map01522 map04919 map05202
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

1695

Amino Acids

185.04

Weight (kDa)

5.49

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 791 - 834 1.1e-07 Myb-like DNA-binding domain
Myb_DNA-bind_7 PF15963 1008 - 1051 6.9e-06 Myb DNA-binding like
Myb_DNA-binding PF00249 1010 - 1051 2.7e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1997
AasI GACNNNNNNGTC 2 cut(s) 162, 1726
Acc36I ACCTGC 3 cut(s) 922, 2822, 3789
AccB1I GGYRCC 1 cut(s) 4784
AccB7I CCANNNNNTGG 3 cut(s) 167, 809, 2929
AccI GTMKAC 2 cut(s) 1730, 4023
AccII CGCG 3 cut(s) 120, 282, 3103
AccIII TCCGGA 1 cut(s) 1233
AcoI YGGCCR 3 cut(s) 541, 4596, 4974
AcsI RAATTY 9 cut(s) 787, 1438, 1467, 1586, 1832, 2006, 3528, 3805, 4459
AcuI CTGAAG 7 cut(s) 247, 1181, 1668, 2634, 3267, 4143, 4493
AcvI CACGTG 1 cut(s) 190
AflII CTTAAG 1 cut(s) 1334
AflIII ACRYGT 3 cut(s) 189, 1429, 4833
AgeI ACCGGT 2 cut(s) 752, 3269
AhdI GACNNNNNGTC 1 cut(s) 3322
AhlI ACTAGT 1 cut(s) 2879
AjiI CACGTC 1 cut(s) 1432
AjuI GAANNNNNNNTTGG 4 cut(s) 2528, 2560, 3582, 3614
AleI CACNNNNGTG 3 cut(s) 722, 1490, 1780
AloI GAACNNNNNNTCC 4 cut(s) 1896, 1928, 2388, 2420
Alw21I GWGCWC 1 cut(s) 4393
AlwNI CAGNNNCTG 2 cut(s) 2816, 4660
Ama87I CYCGRG 1 cut(s) 624
Aor13HI TCCGGA 1 cut(s) 1233
ApoI RAATTY 9 cut(s) 787, 1438, 1467, 1586, 1832, 2006, 3528, 3805, 4459
AseI ATTAAT 2 cut(s) 2202, 4728
AsiGI ACCGGT 2 cut(s) 752, 3269
Asp700I GAANNNNTTC 3 cut(s) 35, 1194, 2432
AspS9I GGNCC 6 cut(s) 323, 856, 1519, 2182, 3669, 4498
AsuC2I CCSGG 3 cut(s) 3938, 4251, 4577
AsuNHI GCTAGC 1 cut(s) 4555
AvaI CYCGRG 1 cut(s) 624
AvaII GGWCC 4 cut(s) 856, 1519, 2182, 3669
AxyI CCTNAGG 1 cut(s) 4209
BaeGI GKGCMC 2 cut(s) 1701, 4233
BaeI ACNNNNGTAYC 4 cut(s) 2748, 2781, 4944, 4977
BalI TGGCCA 2 cut(s) 543, 4598
BamHI GGATCC 3 cut(s) 1657, 3019, 4932
BanI GGYRCC 1 cut(s) 4784
BanII GRGCYC 3 cut(s) 575, 672, 4393
BauI CACGAG 2 cut(s) 56, 4873
BbrPI CACGTG 1 cut(s) 190
BbsI GAAGAC 3 cut(s) 612, 2043, 4682
Bbv12I GWGCWC 1 cut(s) 4393
BceAI ACGGC 2 cut(s) 1588, 3307
BcgI CGANNNNNNTGC 2 cut(s) 652, 686
BciVI GTATCC 1 cut(s) 1241
BclI TGATCA 2 cut(s) 1941, 2458
BcnI CCSGG 3 cut(s) 3938, 4251, 4577
BcuI ACTAGT 1 cut(s) 2879
BfaI CTAG 8 cut(s) 792, 954, 1227, 1386, 2316, 2880, 3051, 4556
BfmI CTRYAG 6 cut(s) 1161, 1702, 3861, 3944, 4608, 4661
BfrI CTTAAG 1 cut(s) 1334
BfuAI ACCTGC 3 cut(s) 922, 2822, 3789
BfuI GTATCC 1 cut(s) 1241
BglI GCCNNNNNGGC 1 cut(s) 397
BlpI GCTNAGC 1 cut(s) 4128
BmcAI AGTACT 1 cut(s) 1290
Bme18I GGWCC 4 cut(s) 856, 1519, 2182, 3669
BmeRI GACNNNNNGTC 1 cut(s) 3322
BmeT110I CYCGRG 1 cut(s) 624
BmgBI CACGTC 1 cut(s) 1432
BmgT120I GGNCC 6 cut(s) 323, 856, 1519, 2182, 3669, 4498
BmiI GGNNCC 9 cut(s) 523, 858, 1090, 1520, 1659, 2184, 3021, 4786, 4934
BmrI ACTGGG 1 cut(s) 4446
BmtI GCTAGC 1 cut(s) 4559
BmuI ACTGGG 1 cut(s) 4446
BpiI GAAGAC 3 cut(s) 612, 2043, 4682
BplI GAGNNNNNCTC 8 cut(s) 1112, 1144, 1676, 1708, 2978, 3010, 4920, 4952
BpmI CTGGAG 5 cut(s) 705, 759, 1005, 1313, 1923
Bpu1102I GCTNAGC 1 cut(s) 4128
BpuEI CTTGAG 2 cut(s) 3863, 4523
BpuMI CCSGG 3 cut(s) 3938, 4251, 4577
Bsa29I ATCGAT 2 cut(s) 2134, 3634
BsaAI YACGTR 2 cut(s) 190, 477
BsaBI GATNNNNATC 1 cut(s) 1656
BsaI GGTCTC 3 cut(s) 384, 1231, 3126
BsaWI WCCGGW 7 cut(s) 752, 1233, 2247, 3269, 3494, 4018, 4756
BsaXI ACNNNNNCTCC 6 cut(s) 1896, 1926, 3498, 3528, 5033, 5063
Bse118I RCCGGY 4 cut(s) 752, 1777, 2266, 3269
Bse1I ACTGG 8 cut(s) 532, 722, 1191, 1296, 3035, 3285, 3701, 4441
Bse21I CCTNAGG 1 cut(s) 4209
Bse3DI GCAATG 7 cut(s) 14, 1460, 1598, 2803, 3833, 4064, 4744
Bse8I GATNNNNATC 1 cut(s) 1656
BseAI TCCGGA 1 cut(s) 1233
BseCI ATCGAT 2 cut(s) 2134, 3634
BseJI GATNNNNATC 1 cut(s) 1656
BseMI GCAATG 7 cut(s) 14, 1460, 1598, 2803, 3833, 4064, 4744
BseNI ACTGG 8 cut(s) 532, 722, 1191, 1296, 3035, 3285, 3701, 4441
BseRI GAGGAG 2 cut(s) 1046, 3056
BseSI GKGCMC 2 cut(s) 1701, 4233
BsgI GTGCAG 3 cut(s) 746, 753, 1514
Bsh1236I CGCG 3 cut(s) 120, 282, 3103
BshNI GGYRCC 1 cut(s) 4784
BshTI ACCGGT 2 cut(s) 752, 3269
BshVI ATCGAT 2 cut(s) 2134, 3634
BsiHKAI GWGCWC 1 cut(s) 4393
BsiHKCI CYCGRG 1 cut(s) 624
BslFI GGGAC 8 cut(s) 55, 110, 842, 1090, 1496, 1532, 2168, 3888
BsmBI CGTCTC 4 cut(s) 231, 279, 2189, 2748
BsmFI GGGAC 8 cut(s) 55, 110, 842, 1090, 1496, 1532, 2168, 3888
BsmI GAATGC 2 cut(s) 3902, 4992
Bso31I GGTCTC 3 cut(s) 384, 1231, 3126
BsoBI CYCGRG 1 cut(s) 624
Bsp1286I GDGCHC 5 cut(s) 575, 672, 1701, 4233, 4393
Bsp13I TCCGGA 1 cut(s) 1233
Bsp1407I TGTACA 1 cut(s) 1709
Bsp1720I GCTNAGC 1 cut(s) 4128
Bsp19I CCATGG 1 cut(s) 2375
Bsp68I TCGCGA 2 cut(s) 120, 3103
BspDI ATCGAT 2 cut(s) 2134, 3634
BspEI TCCGGA 1 cut(s) 1233
BspFNI CGCG 3 cut(s) 120, 282, 3103
BspHI TCATGA 1 cut(s) 1117
BspLI GGNNCC 9 cut(s) 523, 858, 1090, 1520, 1659, 2184, 3021, 4786, 4934
BspMAI CTGCAG 5 cut(s) 1706, 3865, 3948, 4612, 4665
BspMI ACCTGC 3 cut(s) 922, 2822, 3789
BspOI GCTAGC 1 cut(s) 4559
BspT107I GGYRCC 1 cut(s) 4784
BspTI CTTAAG 1 cut(s) 1334
BspTNI GGTCTC 3 cut(s) 384, 1231, 3126
BsrDI GCAATG 7 cut(s) 14, 1460, 1598, 2803, 3833, 4064, 4744
BsrFI RCCGGY 4 cut(s) 752, 1777, 2266, 3269
BsrGI TGTACA 1 cut(s) 1709
BsrI ACTGG 8 cut(s) 532, 722, 1191, 1296, 3035, 3285, 3701, 4441
BssAI RCCGGY 4 cut(s) 752, 1777, 2266, 3269
BssNAI GTATAC 1 cut(s) 4024
BssSI CACGAG 2 cut(s) 56, 4873
BssT1I CCWWGG 5 cut(s) 20, 73, 808, 2375, 3166
Bst1107I GTATAC 1 cut(s) 4024
Bst2BI CACGAG 2 cut(s) 56, 4873
Bst4CI ACNGT 5 cut(s) 308, 2480, 3871, 4448, 4807
Bst6I CTCTTC 4 cut(s) 1677, 2382, 4377, 5040
BstAFI CTTAAG 1 cut(s) 1334
BstAPI GCANNNNNTGC 3 cut(s) 986, 2666, 4660
BstAUI TGTACA 1 cut(s) 1709
BstBAI YACGTR 2 cut(s) 190, 477
BstDSI CCRYGG 2 cut(s) 2375, 4971
BstENI CCTNNNNNAGG 1 cut(s) 2941
BstFNI CGCG 3 cut(s) 120, 282, 3103
BstNSI RCATGY 7 cut(s) 391, 1692, 1753, 2044, 2621, 4837, 4953
BstSFI CTRYAG 6 cut(s) 1161, 1702, 3861, 3944, 4608, 4661
BstSLI GKGCMC 2 cut(s) 1701, 4233
BstUI CGCG 3 cut(s) 120, 282, 3103
BstV2I GAAGAC 3 cut(s) 612, 2043, 4682
BstX2I RGATCY 6 cut(s) 1657, 2335, 3019, 3940, 4932, 4966
BstXI CCANNNNNNTGG 2 cut(s) 21, 1923
BstYI RGATCY 6 cut(s) 1657, 2335, 3019, 3940, 4932, 4966
BstZ17I GTATAC 1 cut(s) 4024
Bsu15I ATCGAT 2 cut(s) 2134, 3634
Bsu36I CCTNAGG 1 cut(s) 4209
BsuI GTATCC 1 cut(s) 1241
BsuTUI ATCGAT 2 cut(s) 2134, 3634
BtgI CCRYGG 2 cut(s) 2375, 4971
BtgZI GCGATG 3 cut(s) 3118, 3431, 4698
BtrI CACGTC 1 cut(s) 1432
BtsI GCAGTG 2 cut(s) 3072, 4658
BtuMI TCGCGA 2 cut(s) 120, 3103
BveI ACCTGC 3 cut(s) 922, 2822, 3789
CaiI CAGNNNCTG 2 cut(s) 2816, 4660
CciI TCATGA 1 cut(s) 1117
Cfr10I RCCGGY 4 cut(s) 752, 1777, 2266, 3269
Cfr13I GGNCC 6 cut(s) 323, 856, 1519, 2182, 3669, 4498
ClaI ATCGAT 2 cut(s) 2134, 3634
CseI GACGC 1 cut(s) 3251
CsiI ACCWGGT 2 cut(s) 1521, 2178
CspAI ACCGGT 2 cut(s) 752, 3269
CspCI CAANNNNNGTGG 4 cut(s) 1200, 1235, 2009, 2044
DraI TTTAAA 1 cut(s) 2011
DrdI GACNNNNNNGTC 2 cut(s) 162, 1726
DriI GACNNNNNGTC 1 cut(s) 3322
DseDI GACNNNNNNGTC 2 cut(s) 162, 1726
EaeI YGGCCR 3 cut(s) 541, 4596, 4974
Eam1104I CTCTTC 4 cut(s) 1677, 2382, 4377, 5040
Eam1105I GACNNNNNGTC 1 cut(s) 3322
EarI CTCTTC 4 cut(s) 1677, 2382, 4377, 5040
Ecl136II GAGCTC 1 cut(s) 4391
Eco130I CCWWGG 5 cut(s) 20, 73, 808, 2375, 3166
Eco147I AGGCCT 1 cut(s) 2773
Eco24I GRGCYC 3 cut(s) 575, 672, 4393
Eco31I GGTCTC 3 cut(s) 384, 1231, 3126
Eco32I GATATC 1 cut(s) 3484
Eco47I GGWCC 4 cut(s) 856, 1519, 2182, 3669
Eco53kI GAGCTC 1 cut(s) 4391
Eco57I CTGAAG 7 cut(s) 247, 1181, 1668, 2634, 3267, 4143, 4493
Eco72I CACGTG 1 cut(s) 190
Eco81I CCTNAGG 1 cut(s) 4209
Eco88I CYCGRG 1 cut(s) 624
EcoICRI GAGCTC 1 cut(s) 4391
EcoNI CCTNNNNNAGG 1 cut(s) 2941
EcoO109I RGGNCCY 1 cut(s) 856
EcoRI GAATTC 2 cut(s) 3805, 4459
EcoRV GATATC 1 cut(s) 3484
EcoT14I CCWWGG 5 cut(s) 20, 73, 808, 2375, 3166
EcoT22I ATGCAT 4 cut(s) 2046, 2619, 2973, 3110
EcoT38I GRGCYC 3 cut(s) 575, 672, 4393
ErhI CCWWGG 5 cut(s) 20, 73, 808, 2375, 3166
Esp3I CGTCTC 4 cut(s) 231, 279, 2189, 2748
FaqI GGGAC 8 cut(s) 55, 110, 842, 1090, 1496, 1532, 2168, 3888
FauI CCCGC 2 cut(s) 4523, 5017
FauNDI CATATG 2 cut(s) 1101, 1265
FbaI TGATCA 2 cut(s) 1941, 2458
FblI GTMKAC 2 cut(s) 1730, 4023
FriOI GRGCYC 3 cut(s) 575, 672, 4393
FspBI CTAG 8 cut(s) 792, 954, 1227, 1386, 2316, 2880, 3051, 4556
GsuI CTGGAG 5 cut(s) 705, 759, 1005, 1313, 1923
HgaI GACGC 1 cut(s) 3251
HincII GTYRAC 4 cut(s) 1168, 1510, 1546, 1872
HindII GTYRAC 4 cut(s) 1168, 1510, 1546, 1872
HindIII AAGCTT 2 cut(s) 613, 934
HpaI GTTAAC 2 cut(s) 1168, 1872
Hpy166II GTNNAC 7 cut(s) 1168, 1510, 1546, 1731, 1872, 3712, 4024
Hpy8I GTNNAC 7 cut(s) 1168, 1510, 1546, 1731, 1872, 3712, 4024
Hpy99I CGWCG 1 cut(s) 3328
HpyCH4III ACNGT 5 cut(s) 308, 2480, 3871, 4448, 4807
HpyCH4IV ACGT 5 cut(s) 189, 476, 1431, 2741, 4852
HpySE526I ACGT 5 cut(s) 189, 476, 1431, 2741, 4852
Kpn2I TCCGGA 1 cut(s) 1233
KroI GCCGGC 1 cut(s) 2266
KroNI GCCGGC 1 cut(s) 2268
Ksp22I TGATCA 2 cut(s) 1941, 2458
KspAI GTTAAC 2 cut(s) 1168, 1872
LmnI GCTCC 3 cut(s) 884, 4388, 5028
MabI ACCWGGT 2 cut(s) 1521, 2178
MaeI CTAG 8 cut(s) 792, 954, 1227, 1386, 2316, 2880, 3051, 4556
MaeII ACGT 5 cut(s) 189, 476, 1431, 2741, 4852
MfeI CAATTG 3 cut(s) 491, 576, 1136
MflI RGATCY 6 cut(s) 1657, 2335, 3019, 3940, 4932, 4966
MhlI GDGCHC 5 cut(s) 575, 672, 1701, 4233, 4393
MlsI TGGCCA 2 cut(s) 543, 4598
MluNI TGGCCA 2 cut(s) 543, 4598
MmeI TCCRAC 5 cut(s) 45, 1128, 1287, 3630, 4842
Mox20I TGGCCA 2 cut(s) 543, 4598
Mph1103I ATGCAT 4 cut(s) 2046, 2619, 2973, 3110
MroI TCCGGA 1 cut(s) 1233
MroNI GCCGGC 1 cut(s) 2266
MroXI GAANNNNTTC 3 cut(s) 35, 1194, 2432
MscI TGGCCA 2 cut(s) 543, 4598
MslI CAYNNNNRTG 8 cut(s) 216, 392, 722, 1490, 1780, 2751, 3438, 4985
Msp20I TGGCCA 2 cut(s) 543, 4598
MspA1I CMGCKG 3 cut(s) 1365, 2813, 4825
MspCI CTTAAG 1 cut(s) 1334
MunI CAATTG 3 cut(s) 491, 576, 1136
Mva1269I GAATGC 2 cut(s) 3902, 4992
MvnI CGCG 3 cut(s) 120, 282, 3103
NaeI GCCGGC 1 cut(s) 2268
NciI CCSGG 3 cut(s) 3938, 4251, 4577
NcoI CCATGG 1 cut(s) 2375
NdeI CATATG 2 cut(s) 1101, 1265
NgoMIV GCCGGC 1 cut(s) 2266
NheI GCTAGC 1 cut(s) 4555
NlaIV GGNNCC 9 cut(s) 523, 858, 1090, 1520, 1659, 2184, 3021, 4786, 4934
NmeAIII GCCGAG 1 cut(s) 2546
NmuCI GTSAC 9 cut(s) 420, 757, 958, 1432, 3239, 3287, 3514, 3692, 4253
NruI TCGCGA 2 cut(s) 120, 3103
NsiI ATGCAT 4 cut(s) 2046, 2619, 2973, 3110
NspI RCATGY 7 cut(s) 391, 1692, 1753, 2044, 2621, 4837, 4953
OliI CACNNNNGTG 3 cut(s) 722, 1490, 1780
PaeI GCATGC 3 cut(s) 1753, 2621, 4953
PagI TCATGA 1 cut(s) 1117
PceI AGGCCT 1 cut(s) 2773
PciI ACATGT 1 cut(s) 4833
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PctI GAATGC 2 cut(s) 3902, 4992
PdiI GCCGGC 1 cut(s) 2268
PdmI GAANNNNTTC 3 cut(s) 35, 1194, 2432
PflFI GACNNNGTC 1 cut(s) 604
PflMI CCANNNNNTGG 3 cut(s) 167, 809, 2929
PfoI TCCNGGA 3 cut(s) 1567, 1922, 4575
PinAI ACCGGT 2 cut(s) 752, 3269
PmaCI CACGTG 1 cut(s) 190
PmlI CACGTG 1 cut(s) 190
Ppu21I YACGTR 2 cut(s) 190, 477
PpuMI RGGWCCY 1 cut(s) 856
PscI ACATGT 1 cut(s) 4833
PshBI ATTAAT 2 cut(s) 2202, 4728
PsiI TTATAA 1 cut(s) 1997
Psp124BI GAGCTC 1 cut(s) 4393
Psp5II RGGWCCY 1 cut(s) 856
PspCI CACGTG 1 cut(s) 190
PspN4I GGNNCC 9 cut(s) 523, 858, 1090, 1520, 1659, 2184, 3021, 4786, 4934
PspPI GGNCC 6 cut(s) 323, 856, 1519, 2182, 3669, 4498
PspPPI RGGWCCY 1 cut(s) 856
PstI CTGCAG 5 cut(s) 1706, 3865, 3948, 4612, 4665
PstNI CAGNNNCTG 2 cut(s) 2816, 4660
PsuI RGATCY 6 cut(s) 1657, 2335, 3019, 3940, 4932, 4966
PsyI GACNNNGTC 1 cut(s) 604
PvuII CAGCTG 2 cut(s) 1365, 2813
RruI TCGCGA 2 cut(s) 120, 3103
RseI CAYNNNNRTG 8 cut(s) 216, 392, 722, 1490, 1780, 2751, 3438, 4985
SacI GAGCTC 1 cut(s) 4393
Sau96I GGNCC 6 cut(s) 323, 856, 1519, 2182, 3669, 4498
ScaI AGTACT 1 cut(s) 1290
SduI GDGCHC 5 cut(s) 575, 672, 1701, 4233, 4393
SexAI ACCWGGT 2 cut(s) 1521, 2178
SfcI CTRYAG 6 cut(s) 1161, 1702, 3861, 3944, 4608, 4661
SgrAI CRCCGGYG 1 cut(s) 1777
SinI GGWCC 4 cut(s) 856, 1519, 2182, 3669
SmiMI CAYNNNNRTG 8 cut(s) 216, 392, 722, 1490, 1780, 2751, 3438, 4985
SmlI CTYRAG 3 cut(s) 1334, 3842, 4502
SmoI CTYRAG 3 cut(s) 1334, 3842, 4502
SpeI ACTAGT 1 cut(s) 2879
SphI GCATGC 3 cut(s) 1753, 2621, 4953
SseBI AGGCCT 1 cut(s) 2773
SspI AATATT 1 cut(s) 1060
SspMI CTAG 8 cut(s) 792, 954, 1227, 1386, 2316, 2880, 3051, 4556
SstI GAGCTC 1 cut(s) 4393
StuI AGGCCT 1 cut(s) 2773
StyI CCWWGG 5 cut(s) 20, 73, 808, 2375, 3166
TaaI ACNGT 5 cut(s) 308, 2480, 3871, 4448, 4807
TaiI ACGT 5 cut(s) 192, 479, 1434, 2744, 4855
TaqI TCGA 9 cut(s) 852, 1583, 2134, 2146, 2152, 2689, 2702, 3634, 4261
TaqII GACCGA 1 cut(s) 219
TatI WGTACW 4 cut(s) 1288, 1709, 2678, 3709
TauI GCSGC 3 cut(s) 7, 4828, 4979
TseFI GTSAC 9 cut(s) 420, 757, 958, 1432, 3239, 3287, 3514, 3692, 4253
Tsp45I GTSAC 9 cut(s) 420, 757, 958, 1432, 3239, 3287, 3514, 3692, 4253
TspGWI ACGGA 2 cut(s) 303, 3540
Tth111I GACNNNGTC 1 cut(s) 604
Van91I CCANNNNNTGG 3 cut(s) 167, 809, 2929
Vha464I CTTAAG 1 cut(s) 1334
VpaK11BI GGWCC 4 cut(s) 856, 1519, 2182, 3669
VspI ATTAAT 2 cut(s) 2202, 4728
XagI CCTNNNNNAGG 1 cut(s) 2941
XapI RAATTY 9 cut(s) 787, 1438, 1467, 1586, 1832, 2006, 3528, 3805, 4459
XceI RCATGY 7 cut(s) 391, 1692, 1753, 2044, 2621, 4837, 4953
XcmI CCANNNNNNNNNTGG 2 cut(s) 810, 3746
XmiI GTMKAC 2 cut(s) 1730, 4023
XmnI GAANNNNTTC 3 cut(s) 35, 1194, 2432
XspI CTAG 8 cut(s) 792, 954, 1227, 1386, 2316, 2880, 3051, 4556
ZrmI AGTACT 1 cut(s) 1290
Zsp2I ATGCAT 4 cut(s) 2046, 2619, 2973, 3110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.