SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G52250 AT3G52250 |
| fragaria_vesca | FvH4_7g19850 FvH4_7g19850 FvH4_7g19850 FvH4_7g19850 |
| malus_domestica | MD01G1110800.v1.1 MD07G1176800.v1.1 MD12G1111400.v1.1 MD12G1111500.v1.1 |
| prunus_persica | Prupe.2G215600_v2.0.a1 Prupe.2G215600_v2.0.a1 |
| pyrus_communis | pycom01g13790 pycom01g13800 pycom01g13810 pycom07g17090 |
| rosa_chinensis | RchiOBHm_Chr1g0363841 |
| rosa_laevigata | RLG00000027542 |
| rosa_multiflora | Rmu_sc0002483.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00292930 |
| rosa_rugosa | Rorug01G0309600 Rorug01G0309700 |
| rosa_samantha | Rh1AG318200 Rh1BG281400 Rh1CG297800 Rh1DG312700 Rh4AG037100 |
| rosa_wichuraiana | Rw1G028240 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1988 |
| AarI | CACCTGC | 1 cut(s) | 2164 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 162 |
| AatII | GACGTC | 1 cut(s) | 864 |
| Acc36I | ACCTGC | 3 cut(s) | 2164, 2819, 5109 |
| Acc65I | GGTACC | 1 cut(s) | 4096 |
| AccB1I | GGYRCC | 1 cut(s) | 4096 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 167, 3481 |
| AccI | GTMKAC | 1 cut(s) | 858 |
| AccII | CGCG | 4 cut(s) | 120, 610, 811, 2143 |
| AccIII | TCCGGA | 1 cut(s) | 5076 |
| AcoI | YGGCCR | 3 cut(s) | 547, 3777, 4629 |
| AcuI | CTGAAG | 6 cut(s) | 1187, 3264, 4164, 4290, 4526, 4727 |
| AcvI | CACGTG | 2 cut(s) | 190, 281 |
| AcyI | GRCGYC | 2 cut(s) | 861, 2378 |
| AfaI | GTAC | 8 cut(s) | 2677, 2723, 3180, 4044, 4098, 4637, 4996, 5051 |
| AflII | CTTAAG | 1 cut(s) | 1340 |
| AflIII | ACRYGT | 2 cut(s) | 189, 4875 |
| AhlI | ACTAGT | 1 cut(s) | 2876 |
| AjiI | CACGTC | 2 cut(s) | 1692, 4876 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3618, 3650 |
| AleI | CACNNNNGTG | 1 cut(s) | 728 |
| Alw21I | GWGCWC | 1 cut(s) | 4426 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2813, 3911 |
| Ama87I | CYCGRG | 3 cut(s) | 630, 960, 1240 |
| Aor13HI | TCCGGA | 1 cut(s) | 5076 |
| ApaI | GGGCCC | 2 cut(s) | 678, 3192 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 689, 721, 1422, 1454, 2044, 2076 |
| AseI | ATTAAT | 1 cut(s) | 2196 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 35, 1200, 2429, 2560 |
| Asp718I | GGTACC | 1 cut(s) | 4096 |
| AspLEI | GCGC | 4 cut(s) | 482, 545, 612, 813 |
| AspS9I | GGNCC | 8 cut(s) | 323, 674, 675, 1103, 3188, 3189, 4531, 4988 |
| AsuC2I | CCSGG | 3 cut(s) | 3192, 3804, 5065 |
| AsuHPI | GGTGA | 9 cut(s) | 1292, 1535, 2759, 2872, 2906, 3224, 3605, 4286, 4346 |
| AvaI | CYCGRG | 3 cut(s) | 630, 960, 1240 |
| AvaII | GGWCC | 2 cut(s) | 1103, 4988 |
| AxyI | CCTNAGG | 1 cut(s) | 1099 |
| BaeGI | GKGCMC | 5 cut(s) | 678, 1704, 3192, 3824, 4254 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 2745, 2778, 3502, 3535 |
| BalI | TGGCCA | 2 cut(s) | 549, 4631 |
| BamHI | GGATCC | 3 cut(s) | 1660, 3016, 4974 |
| BanI | GGYRCC | 1 cut(s) | 4096 |
| BanII | GRGCYC | 3 cut(s) | 678, 3192, 4426 |
| BauI | CACGAG | 3 cut(s) | 56, 1124, 2742 |
| BbrPI | CACGTG | 2 cut(s) | 190, 281 |
| BbsI | GAAGAC | 6 cut(s) | 618, 2034, 2553, 3060, 4028, 4715 |
| Bbv12I | GWGCWC | 1 cut(s) | 4426 |
| BbvCI | CCTCAGC | 1 cut(s) | 3742 |
| BceAI | ACGGC | 2 cut(s) | 3523, 4576 |
| BciVI | GTATCC | 2 cut(s) | 1247, 2746 |
| BclI | TGATCA | 2 cut(s) | 1932, 2455 |
| BcnI | CCSGG | 3 cut(s) | 3192, 3804, 5065 |
| BcuI | ACTAGT | 1 cut(s) | 2876 |
| BfaI | CTAG | 8 cut(s) | 798, 1080, 1233, 1392, 2310, 2877, 3048, 3497 |
| BfmI | CTRYAG | 5 cut(s) | 1167, 2157, 2184, 3903, 4641 |
| BfoI | RGCGCY | 1 cut(s) | 546 |
| BfrI | CTTAAG | 1 cut(s) | 1340 |
| BfuAI | ACCTGC | 3 cut(s) | 2164, 2819, 5109 |
| BfuI | GTATCC | 2 cut(s) | 1247, 2746 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 397 |
| BlpI | GCTNAGC | 1 cut(s) | 2547 |
| Bme18I | GGWCC | 2 cut(s) | 1103, 4988 |
| BmeT110I | CYCGRG | 3 cut(s) | 630, 960, 1240 |
| BmgBI | CACGTC | 2 cut(s) | 1692, 4876 |
| BmgT120I | GGNCC | 8 cut(s) | 323, 674, 675, 1103, 3188, 3189, 4531, 4988 |
| BmrI | ACTGGG | 1 cut(s) | 4542 |
| BmuI | ACTGGG | 1 cut(s) | 4542 |
| BpiI | GAAGAC | 6 cut(s) | 618, 2034, 2553, 3060, 4028, 4715 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 1118, 1150, 2975, 3007, 4962, 4994 |
| BpmI | CTGGAG | 4 cut(s) | 711, 1011, 1914, 3707 |
| Bpu10I | CCTNAGC | 3 cut(s) | 3492, 3742, 3953 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2547 |
| BpuEI | CTTGAG | 1 cut(s) | 4556 |
| BpuMI | CCSGG | 3 cut(s) | 3192, 3804, 5065 |
| Bsa29I | ATCGAT | 3 cut(s) | 1566, 2332, 3670 |
| BsaAI | YACGTR | 2 cut(s) | 190, 281 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1659 |
| BsaHI | GRCGYC | 2 cut(s) | 861, 2378 |
| BsaI | GGTCTC | 4 cut(s) | 384, 583, 3123, 3359 |
| BsaWI | WCCGGW | 3 cut(s) | 264, 3397, 5076 |
| Bse118I | RCCGGY | 1 cut(s) | 4592 |
| Bse21I | CCTNAGG | 1 cut(s) | 1099 |
| Bse3DI | GCAATG | 6 cut(s) | 14, 1466, 2800, 3134, 4085, 4777 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1659 |
| BseAI | TCCGGA | 1 cut(s) | 5076 |
| BseCI | ATCGAT | 3 cut(s) | 1566, 2332, 3670 |
| BseJI | GATNNNNATC | 1 cut(s) | 1659 |
| BseMI | GCAATG | 6 cut(s) | 14, 1466, 2800, 3134, 4085, 4777 |
| BseRI | GAGGAG | 7 cut(s) | 1052, 1424, 2297, 2716, 3053, 4769, 5112 |
| BseSI | GKGCMC | 5 cut(s) | 678, 1704, 3192, 3824, 4254 |
| BseYI | CCCAGC | 1 cut(s) | 1703 |
| BsgI | GTGCAG | 3 cut(s) | 752, 759, 1236 |
| Bsh1236I | CGCG | 4 cut(s) | 120, 610, 811, 2143 |
| Bsh1285I | CGRYCG | 2 cut(s) | 2141, 4720 |
| BshNI | GGYRCC | 1 cut(s) | 4096 |
| BshVI | ATCGAT | 3 cut(s) | 1566, 2332, 3670 |
| BsiEI | CGRYCG | 2 cut(s) | 2141, 4720 |
| BsiHKAI | GWGCWC | 1 cut(s) | 4426 |
| BsiHKCI | CYCGRG | 3 cut(s) | 630, 960, 1240 |
| BsiSI | CCGG | 7 cut(s) | 265, 3192, 3398, 3804, 4593, 5064, 5077 |
| BslFI | GGGAC | 4 cut(s) | 55, 110, 848, 1502 |
| BsmBI | CGTCTC | 4 cut(s) | 231, 1682, 2745, 4103 |
| BsmFI | GGGAC | 4 cut(s) | 55, 110, 848, 1502 |
| BsmI | GAATGC | 4 cut(s) | 3470, 3895, 3944, 5031 |
| Bso31I | GGTCTC | 4 cut(s) | 384, 583, 3123, 3359 |
| BsoBI | CYCGRG | 3 cut(s) | 630, 960, 1240 |
| Bsp120I | GGGCCC | 2 cut(s) | 674, 3188 |
| Bsp1286I | GDGCHC | 6 cut(s) | 678, 1704, 3192, 3824, 4254, 4426 |
| Bsp13I | TCCGGA | 1 cut(s) | 5076 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2547 |
| Bsp19I | CCATGG | 1 cut(s) | 2372 |
| Bsp68I | TCGCGA | 2 cut(s) | 120, 2143 |
| BspDI | ATCGAT | 3 cut(s) | 1566, 2332, 3670 |
| BspEI | TCCGGA | 1 cut(s) | 5076 |
| BspFNI | CGCG | 4 cut(s) | 120, 610, 811, 2143 |
| BspMAI | CTGCAG | 3 cut(s) | 2161, 3907, 4645 |
| BspMI | ACCTGC | 3 cut(s) | 2164, 2819, 5109 |
| BspQI | GCTCTTC | 1 cut(s) | 2134 |
| BspT107I | GGYRCC | 1 cut(s) | 4096 |
| BspTI | CTTAAG | 1 cut(s) | 1340 |
| BspTNI | GGTCTC | 4 cut(s) | 384, 583, 3123, 3359 |
| BsrDI | GCAATG | 6 cut(s) | 14, 1466, 2800, 3134, 4085, 4777 |
| BsrFI | RCCGGY | 1 cut(s) | 4592 |
| BssAI | RCCGGY | 1 cut(s) | 4592 |
| BssNI | GRCGYC | 2 cut(s) | 861, 2378 |
| BssSI | CACGAG | 3 cut(s) | 56, 1124, 2742 |
| BssT1I | CCWWGG | 5 cut(s) | 20, 73, 814, 2372, 3163 |
| Bst2BI | CACGAG | 3 cut(s) | 56, 1124, 2742 |
| Bst6I | CTCTTC | 6 cut(s) | 1680, 2134, 2379, 4410, 4675, 5079 |
| BstACI | GRCGYC | 2 cut(s) | 861, 2378 |
| BstAFI | CTTAAG | 1 cut(s) | 1340 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 992, 2663 |
| BstBAI | YACGTR | 2 cut(s) | 190, 281 |
| BstDSI | CCRYGG | 2 cut(s) | 2372, 5010 |
| BstEII | GGTNACC | 1 cut(s) | 1523 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2021 |
| BstFNI | CGCG | 4 cut(s) | 120, 610, 811, 2143 |
| BstH2I | RGCGCY | 1 cut(s) | 546 |
| BstHHI | GCGC | 4 cut(s) | 482, 545, 612, 813 |
| BstMCI | CGRYCG | 2 cut(s) | 2141, 4720 |
| BstNSI | RCATGY | 4 cut(s) | 391, 625, 1756, 4049 |
| BstPI | GGTNACC | 1 cut(s) | 1523 |
| BstSFI | CTRYAG | 5 cut(s) | 1167, 2157, 2184, 3903, 4641 |
| BstSLI | GKGCMC | 5 cut(s) | 678, 1704, 3192, 3824, 4254 |
| BstUI | CGCG | 4 cut(s) | 120, 610, 811, 2143 |
| BstV2I | GAAGAC | 6 cut(s) | 618, 2034, 2553, 3060, 4028, 4715 |
| BstX2I | RGATCY | 7 cut(s) | 1660, 3016, 3715, 3982, 3995, 4974, 5005 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 21, 3538, 4814 |
| BstYI | RGATCY | 7 cut(s) | 1660, 3016, 3715, 3982, 3995, 4974, 5005 |
| Bsu15I | ATCGAT | 3 cut(s) | 1566, 2332, 3670 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1099 |
| BsuI | GTATCC | 2 cut(s) | 1247, 2746 |
| BsuTUI | ATCGAT | 3 cut(s) | 1566, 2332, 3670 |
| BtgI | CCRYGG | 2 cut(s) | 2372, 5010 |
| BtgZI | GCGATG | 1 cut(s) | 2108 |
| BtrI | CACGTC | 2 cut(s) | 1692, 4876 |
| BtsI | GCAGTG | 1 cut(s) | 3069 |
| BtuMI | TCGCGA | 2 cut(s) | 120, 2143 |
| BveI | ACCTGC | 3 cut(s) | 2164, 2819, 5109 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2813, 3911 |
| CfoI | GCGC | 4 cut(s) | 482, 545, 612, 813 |
| Cfr10I | RCCGGY | 1 cut(s) | 4592 |
| Cfr13I | GGNCC | 8 cut(s) | 323, 674, 675, 1103, 3188, 3189, 4531, 4988 |
| ClaI | ATCGAT | 3 cut(s) | 1566, 2332, 3670 |
| CseI | GACGC | 4 cut(s) | 616, 2386, 3248, 4286 |
| CsiI | ACCWGGT | 2 cut(s) | 1527, 4270 |
| Csp6I | GTAC | 8 cut(s) | 2676, 2722, 3179, 4043, 4097, 4636, 4995, 5050 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 1206, 1241, 2000, 2035, 3739, 3774 |
| CviQI | GTAC | 8 cut(s) | 2676, 2722, 3179, 4043, 4097, 4636, 4995, 5050 |
| DraI | TTTAAA | 1 cut(s) | 2002 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 162 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 162 |
| EaeI | YGGCCR | 3 cut(s) | 547, 3777, 4629 |
| Eam1104I | CTCTTC | 6 cut(s) | 1680, 2134, 2379, 4410, 4675, 5079 |
| EarI | CTCTTC | 6 cut(s) | 1680, 2134, 2379, 4410, 4675, 5079 |
| Ecl136II | GAGCTC | 1 cut(s) | 4424 |
| Eco130I | CCWWGG | 5 cut(s) | 20, 73, 814, 2372, 3163 |
| Eco24I | GRGCYC | 3 cut(s) | 678, 3192, 4426 |
| Eco31I | GGTCTC | 4 cut(s) | 384, 583, 3123, 3359 |
| Eco32I | GATATC | 1 cut(s) | 1564 |
| Eco47I | GGWCC | 2 cut(s) | 1103, 4988 |
| Eco53kI | GAGCTC | 1 cut(s) | 4424 |
| Eco57I | CTGAAG | 6 cut(s) | 1187, 3264, 4164, 4290, 4526, 4727 |
| Eco72I | CACGTG | 2 cut(s) | 190, 281 |
| Eco81I | CCTNAGG | 1 cut(s) | 1099 |
| Eco88I | CYCGRG | 3 cut(s) | 630, 960, 1240 |
| Eco91I | GGTNACC | 1 cut(s) | 1523 |
| EcoICRI | GAGCTC | 1 cut(s) | 4424 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2021 |
| EcoO109I | RGGNCCY | 2 cut(s) | 674, 1103 |
| EcoO65I | GGTNACC | 1 cut(s) | 1523 |
| EcoRI | GAATTC | 2 cut(s) | 3847, 4210 |
| EcoRV | GATATC | 1 cut(s) | 1564 |
| EcoT14I | CCWWGG | 5 cut(s) | 20, 73, 814, 2372, 3163 |
| EcoT22I | ATGCAT | 1 cut(s) | 3472 |
| EcoT38I | GRGCYC | 3 cut(s) | 678, 3192, 4426 |
| ErhI | CCWWGG | 5 cut(s) | 20, 73, 814, 2372, 3163 |
| Esp3I | CGTCTC | 4 cut(s) | 231, 1682, 2745, 4103 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 495, 527, 610, 642, 2932, 2964, 3125, 3157 |
| FaqI | GGGAC | 4 cut(s) | 55, 110, 848, 1502 |
| FauI | CCCGC | 2 cut(s) | 3981, 4556 |
| FbaI | TGATCA | 2 cut(s) | 1932, 2455 |
| FblI | GTMKAC | 1 cut(s) | 858 |
| FriOI | GRGCYC | 3 cut(s) | 678, 3192, 4426 |
| FspBI | CTAG | 8 cut(s) | 798, 1080, 1233, 1392, 2310, 2877, 3048, 3497 |
| GlaI | GCGC | 4 cut(s) | 481, 544, 611, 812 |
| GsaI | CCCAGC | 1 cut(s) | 1707 |
| GsuI | CTGGAG | 4 cut(s) | 711, 1011, 1914, 3707 |
| HaeII | RGCGCY | 1 cut(s) | 546 |
| HapII | CCGG | 7 cut(s) | 265, 3192, 3398, 3804, 4593, 5064, 5077 |
| HgaI | GACGC | 4 cut(s) | 616, 2386, 3248, 4286 |
| HhaI | GCGC | 4 cut(s) | 482, 545, 612, 813 |
| Hin1I | GRCGYC | 2 cut(s) | 861, 2378 |
| Hin6I | GCGC | 4 cut(s) | 480, 543, 610, 811 |
| HinP1I | GCGC | 4 cut(s) | 480, 543, 610, 811 |
| HincII | GTYRAC | 2 cut(s) | 859, 1174 |
| HindII | GTYRAC | 2 cut(s) | 859, 1174 |
| HindIII | AAGCTT | 3 cut(s) | 940, 2089, 4059 |
| HpaI | GTTAAC | 1 cut(s) | 1174 |
| HpaII | CCGG | 7 cut(s) | 265, 3192, 3398, 3804, 4593, 5064, 5077 |
| HphI | GGTGA | 9 cut(s) | 1292, 1535, 2759, 2872, 2906, 3224, 3605, 4286, 4346 |
| Hpy166II | GTNNAC | 3 cut(s) | 859, 1174, 4995 |
| Hpy8I | GTNNAC | 3 cut(s) | 859, 1174, 4995 |
| Hpy99I | CGWCG | 2 cut(s) | 863, 1965 |
| HpyCH4IV | ACGT | 9 cut(s) | 189, 280, 861, 1691, 1963, 2693, 2738, 2820, 4875 |
| HpySE526I | ACGT | 9 cut(s) | 189, 280, 861, 1691, 1963, 2693, 2738, 2820, 4875 |
| Hsp92I | GRCGYC | 2 cut(s) | 861, 2378 |
| HspAI | GCGC | 4 cut(s) | 480, 543, 610, 811 |
| Kpn2I | TCCGGA | 1 cut(s) | 5076 |
| KpnI | GGTACC | 1 cut(s) | 4100 |
| Ksp22I | TGATCA | 2 cut(s) | 1932, 2455 |
| KspAI | GTTAAC | 1 cut(s) | 1174 |
| LguI | GCTCTTC | 1 cut(s) | 2134 |
| LmnI | GCTCC | 4 cut(s) | 3805, 3898, 4421, 5067 |
| MabI | ACCWGGT | 2 cut(s) | 1527, 4270 |
| MaeI | CTAG | 8 cut(s) | 798, 1080, 1233, 1392, 2310, 2877, 3048, 3497 |
| MaeII | ACGT | 9 cut(s) | 189, 280, 861, 1691, 1963, 2693, 2738, 2820, 4875 |
| MfeI | CAATTG | 4 cut(s) | 497, 582, 1142, 2652 |
| MflI | RGATCY | 7 cut(s) | 1660, 3016, 3715, 3982, 3995, 4974, 5005 |
| MhlI | GDGCHC | 6 cut(s) | 678, 1704, 3192, 3824, 4254, 4426 |
| MlsI | TGGCCA | 2 cut(s) | 549, 4631 |
| MluNI | TGGCCA | 2 cut(s) | 549, 4631 |
| MmeI | TCCRAC | 2 cut(s) | 45, 1134 |
| Mox20I | TGGCCA | 2 cut(s) | 549, 4631 |
| Mph1103I | ATGCAT | 1 cut(s) | 3472 |
| MroI | TCCGGA | 1 cut(s) | 5076 |
| MroXI | GAANNNNTTC | 4 cut(s) | 35, 1200, 2429, 2560 |
| MscI | TGGCCA | 2 cut(s) | 549, 4631 |
| Msp20I | TGGCCA | 2 cut(s) | 549, 4631 |
| MspA1I | CMGCKG | 5 cut(s) | 1371, 2810, 3322, 3782, 4867 |
| MspCI | CTTAAG | 1 cut(s) | 1340 |
| MspI | CCGG | 7 cut(s) | 265, 3192, 3398, 3804, 4593, 5064, 5077 |
| MunI | CAATTG | 4 cut(s) | 497, 582, 1142, 2652 |
| Mva1269I | GAATGC | 4 cut(s) | 3470, 3895, 3944, 5031 |
| MvnI | CGCG | 4 cut(s) | 120, 610, 811, 2143 |
| NciI | CCSGG | 3 cut(s) | 3192, 3804, 5065 |
| NcoI | CCATGG | 1 cut(s) | 2372 |
| NmuCI | GTSAC | 7 cut(s) | 705, 1438, 1523, 3236, 3284, 3328, 4274 |
| NruI | TCGCGA | 2 cut(s) | 120, 2143 |
| NsiI | ATGCAT | 1 cut(s) | 3472 |
| NspI | RCATGY | 4 cut(s) | 391, 625, 1756, 4049 |
| OliI | CACNNNNGTG | 1 cut(s) | 728 |
| PaeI | GCATGC | 1 cut(s) | 1756 |
| PaqCI | CACCTGC | 1 cut(s) | 2164 |
| PciSI | GCTCTTC | 1 cut(s) | 2134 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 195, 5040 |
| PctI | GAATGC | 4 cut(s) | 3470, 3895, 3944, 5031 |
| PdmI | GAANNNNTTC | 4 cut(s) | 35, 1200, 2429, 2560 |
| PflFI | GACNNNGTC | 1 cut(s) | 2477 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 167, 3481 |
| PfoI | TCCNGGA | 2 cut(s) | 1573, 1913 |
| Ple19I | CGATCG | 2 cut(s) | 2141, 4720 |
| PmaCI | CACGTG | 2 cut(s) | 190, 281 |
| PmlI | CACGTG | 2 cut(s) | 190, 281 |
| Ppu21I | YACGTR | 2 cut(s) | 190, 281 |
| PpuMI | RGGWCCY | 1 cut(s) | 1103 |
| PshBI | ATTAAT | 1 cut(s) | 2196 |
| PsiI | TTATAA | 1 cut(s) | 1988 |
| Psp124BI | GAGCTC | 1 cut(s) | 4426 |
| Psp5II | RGGWCCY | 1 cut(s) | 1103 |
| PspCI | CACGTG | 2 cut(s) | 190, 281 |
| PspEI | GGTNACC | 1 cut(s) | 1523 |
| PspFI | CCCAGC | 1 cut(s) | 1703 |
| PspOMI | GGGCCC | 2 cut(s) | 674, 3188 |
| PspPI | GGNCC | 8 cut(s) | 323, 674, 675, 1103, 3188, 3189, 4531, 4988 |
| PspPPI | RGGWCCY | 1 cut(s) | 1103 |
| PstI | CTGCAG | 3 cut(s) | 2161, 3907, 4645 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2813, 3911 |
| PsuI | RGATCY | 7 cut(s) | 1660, 3016, 3715, 3982, 3995, 4974, 5005 |
| PsyI | GACNNNGTC | 1 cut(s) | 2477 |
| PvuI | CGATCG | 2 cut(s) | 2141, 4720 |
| PvuII | CAGCTG | 2 cut(s) | 1371, 2810 |
| RruI | TCGCGA | 2 cut(s) | 120, 2143 |
| RsaI | GTAC | 8 cut(s) | 2677, 2723, 3180, 4044, 4098, 4637, 4996, 5051 |
| RsaNI | GTAC | 8 cut(s) | 2676, 2722, 3179, 4043, 4097, 4636, 4995, 5050 |
| SacI | GAGCTC | 1 cut(s) | 4426 |
| SalI | GTCGAC | 1 cut(s) | 857 |
| SapI | GCTCTTC | 1 cut(s) | 2134 |
| Sau96I | GGNCC | 8 cut(s) | 323, 674, 675, 1103, 3188, 3189, 4531, 4988 |
| SbfI | CCTGCAGG | 1 cut(s) | 2161 |
| SdaI | CCTGCAGG | 1 cut(s) | 2161 |
| SduI | GDGCHC | 6 cut(s) | 678, 1704, 3192, 3824, 4254, 4426 |
| SexAI | ACCWGGT | 2 cut(s) | 1527, 4270 |
| SfcI | CTRYAG | 5 cut(s) | 1167, 2157, 2184, 3903, 4641 |
| SinI | GGWCC | 2 cut(s) | 1103, 4988 |
| SmlI | CTYRAG | 2 cut(s) | 1340, 4535 |
| SmoI | CTYRAG | 2 cut(s) | 1340, 4535 |
| SpeI | ACTAGT | 1 cut(s) | 2876 |
| SphI | GCATGC | 1 cut(s) | 1756 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 2161 |
| SspI | AATATT | 1 cut(s) | 1836 |
| SspMI | CTAG | 8 cut(s) | 798, 1080, 1233, 1392, 2310, 2877, 3048, 3497 |
| SstI | GAGCTC | 1 cut(s) | 4426 |
| StyI | CCWWGG | 5 cut(s) | 20, 73, 814, 2372, 3163 |
| TaiI | ACGT | 9 cut(s) | 192, 283, 864, 1694, 1966, 2696, 2741, 2823, 4878 |
| TaqII | GACCGA | 2 cut(s) | 219, 3641 |
| TatI | WGTACW | 1 cut(s) | 4042 |
| TauI | GCSGC | 6 cut(s) | 7, 811, 893, 3322, 3782, 4870 |
| TseFI | GTSAC | 7 cut(s) | 705, 1438, 1523, 3236, 3284, 3328, 4274 |
| Tsp45I | GTSAC | 7 cut(s) | 705, 1438, 1523, 3236, 3284, 3328, 4274 |
| TspGWI | ACGGA | 1 cut(s) | 4980 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2477 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 167, 3481 |
| Vha464I | CTTAAG | 1 cut(s) | 1340 |
| VpaK11BI | GGWCC | 2 cut(s) | 1103, 4988 |
| VspI | ATTAAT | 1 cut(s) | 2196 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2021 |
| XbaI | TCTAGA | 1 cut(s) | 3047 |
| XceI | RCATGY | 4 cut(s) | 391, 625, 1756, 4049 |
| XmiI | GTMKAC | 1 cut(s) | 858 |
| XmnI | GAANNNNTTC | 4 cut(s) | 35, 1200, 2429, 2560 |
| XspI | CTAG | 8 cut(s) | 798, 1080, 1233, 1392, 2310, 2877, 3048, 3497 |
| ZraI | GACGTC | 1 cut(s) | 862 |
| Zsp2I | ATGCAT | 1 cut(s) | 3472 |