Rh1DG312700
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0005694
Physical Location & Seq
Forward (+)
53990675 .. 53999226
8552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG312700.1

Sequence Viewer

Length: 3906 bp
ATGGATTCTAGTACAATGAGACCTACTGCAATGAACAAGTTGCTTATATGGAAAGGTGATATTTCAAAAGTATTGGAGGTGACTGAATCAGAAATTGATTTGCTTGAAAACGAACTGAAGATATTGAACTCTGATTCTAGGGACAGCTGTGCAGCAGCTTCCAGTTCTTTGCCTGTTGAGGAGAGTGATAAATCTGGCAAAGAACACGCTACTGCCAAAAATTTGATCACCAGACCTGCTCCATTGCAAATTTTTTCTTCTGAGGATACAGATCCAGAGAAGTTGGCCCTAGGTAATGGAGAACAGGGAGAGTCCTGTGGTGTTAAGGATCAAGATATGGATAGTCCTGGAACAGCAACGTCAAAATTTGTTGAACAGTTACCTTTGTTGAAGGTGGCTTCATCTGATATGGGGAATCCAAGTGGTTGTGCTGAGAACCAGGACCTAGTTCAAACGGCTGAAAGGGATGTAGAATGTTTAGTGGCTGTTAAAGATGAAGAAAAAAGTGACTTGTCTGCGCATGGAAATAGTAGAATGCTTTTAGGTAGTGAGATAGTTACACCTGTTTCTGATGGTTTGGATCTTTGTGCTGGTGTAGTAGATACATTATGTGATTCTATATTTTCTTCCAATAAAGAATCTGCAAATAGAGCGTCTGACATATTTAATAAGCTGTTGCCCAAAGATAACTGTGAAGTTGATATTTCGGTACTTGGTATTTCCTCATCATGGAAGAATGATTCATTGATCAAAGAGAAGTTCAAAGCAAGGAAGCGGCGTTTAAGGTTTATGGAGAGAGTCATAACCTTAAAATATAAGGCCCATCAGCAATTGTGGAAGGAAGACGTCCGTTTGCTTTCAGAGCAAAAATATCGTCCAAAATCTCACAAAAAATGTGATTTAGGATTGCGGAACACCACTAATGGGTACCAAAAGCATCGCTCTTCCATTCGCTCCCGTTTTTCTACACCTGCAGGAAATTTGAGCCTGGTTCCTACTAAAGAGGTTGAGAAGTTTGCTAACAAGGTGCTCTGTGATTCCCAAGTCAAACTTTATAGGAATTCATTGAAGATGCCAGCCTTAATTTTGGACAAGAAGGAGAAGATTGTGACAAGGTTTGTTTCTAGTAATGGCTTAGTTGAAGATCCCTGCGCTGTTGAGAAGGAAAGGGCTTTGATTAACCCTTGGACACCAGAAGAAAAAGAAGCTTTCATTGAAAAGTTGGCGGTCTTTGGGAAAGATTTTAAAAAGATCGCCTCTTTTTTCGACCACAAGACAACTGCTGACTGTGTTGAGTTCTACTACAAGCATCACAAATCTGCTGCTTTTCAGAAAGCAAAGAAGAAGCCTGATATCTCTAAACTAGGAAAGTCCTCTGCCAATACCTACATGATTAACCCTGGGACAAAATGGAATCGTGAGGTGAATGCTGCTTCCCTTGATATTCTTGGTGCTGCTTCTGTGATGGCAGCTCAGGCTGATGGCAGTACAAGAAACCGGACTGGGCGTTTAATTTTAGGAGGTTACAAGAATATGAAGATATCACAGAGTGACGATGTGACTGTTGAAAGGTCGTGCAGTTTTGATGTTATTGGGAATGAGAGAGAAACAGCTGCTGCTGATGTTTTAGCAGGTATCTGTGGGTCTCTGTCTTCCGAGGCTGTCAGTTCTTGCATCACTAGTTCCATTGATCCTGTTGACGGTTGCCGGGAATGGAAGTGCCAGAAAGTTGATTTACTAGTAAGACGACCTTTGACACCTGATGTTATGCAAAGTGTTGACGATGAGACATGTTCAGATGAGAGTTGTGGTGAAATGGATCCTTCTGATTGGACAGATGAGGAGAAGTCTAGCTTTATACAGGCAGTGTCATCCCATGGTAAGGACTTTGCTATGATCTCACGATGTGTAAGAACGAGGTCCCAGAATCAATGCAAGGTTTTCTTTAGTAAGGCTCGGAAGTGCCTTGGGCTTGATTTGGTACATCCTCGGCGTGGAAATGAAGGAGCTTCTATTGTTGATGATGCTAATGGAGGTGGGAGTGATACTGAAGATGCCTGCGTTGTGGAAACTGGTTCTGGTATTTCCATTGATAAGTCGGGTTGTGAAATGAATGAGGACTTGCCATTGTCTGTTATGGACATGGATCATGAAGACTCTGATCCTGAAGAGACCATTAATTTGAAATGTGATCCACTGGGATCAGTGGAAAACAATGTGAAGGGAGAAGTTGACCATCTAGATAACAAGGCTCTCAAATCTTCTGATGCACTCCAGATGGAAGATAGGCCTAAGGTAGTTTTTGATGATGTCACCAACATCATGGATGTTGGTGACAGACTGTCCGAGTCAGTGCCTGCCCAGAGAAGTGAAGCATTTTCTGCTGATGCAGATGCAGATGCTGTGAGAGATAATGTGGCTGAAAAGAGAAGTTTGGTTGCAGAGTCGCTCATTGGTGAGGGAATCAGCTCTGACCTACCTAAATTGGAGGGACAGGGTGAAAGATGCAATACAGATACAAGTGGATGTGGCTTACAAGTTTCAGCAAATGATTCTAATTCTAGTGGCAGTGCTTCTGACATGGCTGCTGAAGGTTCCTGTTCAGGTTTGGCTGCTGAGTGCCTGCATCAAGTGTCGGTTGAGTTGAATTCTATGCAAAAGTCGTCTGTCAATTCATTGTCACATGAGAATCTTCTTGCTACTGCAATTTCAGTGCCGGAAAATTCTGCTGTAGTTGAATATGGGAAAGCCATTAACCAAGATAGGTTGTCATCAACATCAGATCTGCAGGAGGGTAGAGATAAGCATTCCTTATCTGTTGGTGGAGATGATTGTCACAAGCACTTGCCTGGTCTTCCAGTATTGACAAATATTGATCCAGCCCATGTTCTCAGGGGTTATCCATTGCACATGGCGACGAAGAAAGAGATCAATGGGCACATCAGTTCTGGTAACTTATCTGAAGTACGAAACCTTTCAAAGCCAGACGGGCCAAAAGATTGCCTTCTTCAGTCTGGTAACTGCAAACCCCGAAGTTCTCAGGATTTTCCACTTGTGCATCAAAAGATAGAGCGCCGAACTGATACTACAAAAGCCCATTCATGGAGTTCATCAGATACGGATAAACCGAGCAGGAATGGTGATGTGAAACTGTTCGGTAAGATACTCACCAATACCTCCAAGTCCAGTTCCAGTATCCAGGAGAATGAAGAAAAGGGGTCCAATATCCATAATTTAAGCAACAAGTCATCTAACTTAAAATTCAGCGGGCATCATAACTTAGATGGAAACTCTGGCGTCCTGAAGTTTGATAGTAGTAATTATGCTGGCCTTGAGAATGTTCCCAGGAGGAGTTACAGCTTTTGGGAAGGGAACAAAGTACAAAATGGGCATCCATCTTTTCCTGATTCGGCCATCTTGCTTGCCAAGTACCCTGCAGCTTTTGGTAACTTTCCTACATCCTCGTCCAAATTGGAACAGAAACCATTGCAGGCAGTTGTTAGGAACAATGAGGGCCATGTAAATGGTGCATCAGTTTTTCCTTCAAGGGAAATTAGTAGCAGCAGCAGTAGTGGAATTGTTGATTATCATCAGGTGTTCAGCAGGCATCGTGATGGTGGTGCTAAAGTGCCACCATTTACAGTAGATGTGAAGCAGAGGCAAGACATATTTGATGTTTCAAGACGAAATGGGTTTGAATCAAGTTTACAGCAGCAAGGAAGGGGGATTGCCGGAATGAATGTGGTAGGGAGAGGGGGAATTATGGTAGGAGGGCCATGCACAGGTGTTTCAGATCCTGTGGCTGCCATAAGAATGCACTATGCGAAAACAGAACAGTATGGAGGGCAGGGGAGCATCATCAGGGAGGAGGAGTCGTGGAGAGGTAAGGGTGACATAGGGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000226 GO:0000228 GO:0000785 GO:0000790 GO:0000981 GO:0001067 GO:0001085 GO:0001102 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003712 GO:0003714 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005874 GO:0005876 GO:0006109 GO:0006110 GO:0006139 GO:0006140 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009966 GO:0009968 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0015630 GO:0016043 GO:0016070 GO:0016922 GO:0017053 GO:0018130 GO:0019216 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019899 GO:0022402 GO:0022607 GO:0023051 GO:0023057 GO:0030808 GO:0030811 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031329 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032368 GO:0032774 GO:0032872 GO:0032873 GO:0032879 GO:0032890 GO:0032991 GO:0033613 GO:0034641 GO:0034645 GO:0034654 GO:0035257 GO:0042325 GO:0042326 GO:0042826 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043269 GO:0043408 GO:0043409 GO:0043467 GO:0043470 GO:0044070 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0045936 GO:0046328 GO:0046329 GO:0046483 GO:0046966 GO:0048511 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051172 GO:0051174 GO:0051193 GO:0051196 GO:0051225 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051427 GO:0060147 GO:0060149 GO:0060255 GO:0060964 GO:0060965 GO:0060966 GO:0060967 GO:0060968 GO:0060969 GO:0062012 GO:0065007 GO:0070013 GO:0070302 GO:0070303 GO:0070920 GO:0070925 GO:0071704 GO:0071840 GO:0072361 GO:0072362 GO:0072367 GO:0072368 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0097659 GO:0098679 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140110 GO:1900371 GO:1900402 GO:1900542 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902531 GO:1902532 GO:1902679 GO:1903506 GO:1903507 GO:1903578 GO:1903798 GO:1903799 GO:1905952 GO:2000112 GO:2000113 GO:2000191 GO:2001141 GO:2001169
KEGG Pathways
Metabolic & Signaling
ko01522 ko04919 ko05202 map01522 map04919 map05202
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

1301

Amino Acids

141.55

Weight (kDa)

5.65

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 395 - 437 4.7e-09 Myb-like DNA-binding domain
DUF7952 PF25826 396 - 447 6.9e-06 Domain of unknown function (DUF7952)
Myb_DNA-binding PF00249 610 - 651 2.2e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 979
AatII GACGTC 1 cut(s) 849
Acc16I TGCGCA 1 cut(s) 519
Acc36I ACCTGC 3 cut(s) 244, 979, 1622
Acc65I GGTACC 1 cut(s) 927
AccB1I GGYRCC 1 cut(s) 927
AciI CCGC 4 cut(s) 775, 910, 1226, 3267
AcoI YGGCCR 1 cut(s) 3411
AcsI RAATTY 8 cut(s) 220, 249, 365, 979, 1060, 2647, 2722, 3260
AcuI CTGAAG 7 cut(s) 137, 2070, 2187, 2610, 2982, 2993, 3323
AcyI GRCGYC 2 cut(s) 846, 3297
AdeI CACNNNGTG 2 cut(s) 1550, 1907
AfaI GTAC 8 cut(s) 13, 711, 929, 1489, 1983, 2967, 3381, 3431
AfiI CCNNNNNNNGG 7 cut(s) 729, 924, 1700, 1882, 1994, 3102, 3782
AflIII ACRYGT 1 cut(s) 1790
AhdI GACNNNNNGTC 1 cut(s) 2341
AhlI ACTAGT 2 cut(s) 1679, 1738
AjnI CCWGG 7 cut(s) 346, 438, 987, 1399, 2848, 3198, 3344
Alw21I GWGCWC 1 cut(s) 1032
Alw26I GTCTC 4 cut(s) 13, 1650, 1781, 2165
AlwNI CAGNNNCTG 4 cut(s) 1616, 2357, 2402, 3797
AoxI GGCC 8 cut(s) 285, 819, 2288, 2990, 3328, 3411, 3514, 3773
ApoI RAATTY 8 cut(s) 220, 249, 365, 979, 1060, 2647, 2722, 3260
ArsI GACNNNNNNTTYG 6 cut(s) 638, 670, 859, 891, 2164, 2196
AseI ATTAAT 1 cut(s) 2178
Asp700I GAANNNNTTC 2 cut(s) 2974, 3152
Asp718I GGTACC 1 cut(s) 927
AspA2I CCTAGG 1 cut(s) 289
AspLEI GCGC 3 cut(s) 520, 1154, 3075
AspS9I GGNCC 8 cut(s) 286, 442, 820, 1920, 2990, 3219, 3514, 3773
AsuC2I CCSGG 1 cut(s) 1709
AvaII GGWCC 3 cut(s) 442, 1920, 3219
AvrII CCTAGG 1 cut(s) 289
AxyI CCTNAGG 1 cut(s) 2292
BaeGI GKGCMC 1 cut(s) 2940
BamHI GGATCC 1 cut(s) 1819
BanI GGYRCC 1 cut(s) 927
BbsI GAAGAC 4 cut(s) 849, 1644, 2160, 2846
Bbv12I GWGCWC 1 cut(s) 1032
BceAI ACGGC 1 cut(s) 471
BcgI CGANNNNNNTGC 2 cut(s) 854, 888
BciT130I CCWGG 7 cut(s) 348, 440, 989, 1401, 2850, 3200, 3346
BciVI GTATCC 2 cut(s) 259, 3206
BclI TGATCA 2 cut(s) 225, 747
BcnI CCSGG 1 cut(s) 1709
BcoDI GTCTC 4 cut(s) 13, 1650, 1781, 2165
BcuI ACTAGT 2 cut(s) 1679, 1738
BfmI CTRYAG 4 cut(s) 972, 2730, 2786, 3435
BfoI RGCGCY 1 cut(s) 3076
BfuAI ACCTGC 3 cut(s) 244, 979, 1622
BfuI GTATCC 2 cut(s) 259, 3206
BglI GCCNNNNNGGC 1 cut(s) 2989
BglII AGATCT 1 cut(s) 2782
BlnI CCTAGG 1 cut(s) 289
Bme1390I CCNGG 8 cut(s) 348, 440, 989, 1401, 1709, 2850, 3200, 3346
Bme18I GGWCC 3 cut(s) 442, 1920, 3219
BmeRI GACNNNNNGTC 1 cut(s) 2341
BmgT120I GGNCC 8 cut(s) 286, 442, 820, 1920, 2990, 3219, 3514, 3773
BmiI GGNNCC 6 cut(s) 929, 993, 1821, 1922, 2596, 3220
BmrFI CCNGG 8 cut(s) 348, 440, 989, 1401, 1709, 2850, 3200, 3346
BmrI ACTGGG 2 cut(s) 1512, 2207
BmuI ACTGGG 2 cut(s) 1512, 2207
BpiI GAAGAC 4 cut(s) 849, 1644, 2160, 2846
BpmI CTGGAG 1 cut(s) 2258
Bpu10I CCTNAGC 1 cut(s) 1473
BpuEI CTTGAG 1 cut(s) 3353
BpuMI CCSGG 1 cut(s) 1709
BsaBI GATNNNNATC 2 cut(s) 270, 3588
BsaHI GRCGYC 2 cut(s) 846, 3297
BsaI GGTCTC 3 cut(s) 13, 1650, 2165
BsaJI CCNNGG 9 cut(s) 289, 1184, 1399, 1400, 1656, 1876, 1966, 1988, 3344
BsaWI WCCGGW 1 cut(s) 1497
BsaXI ACNNNNNCTCC 4 cut(s) 3857, 3860, 3887, 3890
Bsc4I CCNNNNNNNGG 7 cut(s) 729, 924, 1700, 1882, 1994, 3102, 3782
Bse1I ACTGG 7 cut(s) 162, 1507, 2077, 2202, 2858, 3186, 3192
Bse21I CCTNAGG 1 cut(s) 2292
Bse3DI GCAATG 4 cut(s) 36, 242, 2903, 3485
Bse8I GATNNNNATC 2 cut(s) 270, 3588
BseBI CCWGG 7 cut(s) 348, 440, 989, 1401, 2850, 3200, 3346
BseDI CCNNGG 9 cut(s) 289, 1184, 1399, 1400, 1656, 1876, 1966, 1988, 3344
BseGI GGATG 7 cut(s) 472, 1871, 1984, 2332, 2531, 3391, 3458
BseJI GATNNNNATC 2 cut(s) 270, 3588
BseLI CCNNNNNNNGG 7 cut(s) 729, 924, 1700, 1882, 1994, 3102, 3782
BseMI GCAATG 4 cut(s) 36, 242, 2903, 3485
BseMII CTCAG 6 cut(s) 252, 423, 1487, 2607, 2905, 3053
BseNI ACTGG 7 cut(s) 162, 1507, 2077, 2202, 2858, 3186, 3192
BseRI GAGGAG 5 cut(s) 194, 1856, 3364, 3881, 3884
BseSI GKGCMC 1 cut(s) 2940
BsgI GTGCAG 2 cut(s) 171, 1597
BshFI GGCC 8 cut(s) 287, 821, 2290, 2992, 3330, 3413, 3516, 3775
BshNI GGYRCC 1 cut(s) 927
BsiHKAI GWGCWC 1 cut(s) 1032
BsiSI CCGG 4 cut(s) 1498, 1708, 2717, 3732
BslFI GGGAC 4 cut(s) 155, 1417, 1906, 2505
BslI CCNNNNNNNGG 7 cut(s) 729, 924, 1700, 1882, 1994, 3102, 3782
BsmAI GTCTC 4 cut(s) 13, 1650, 1781, 2165
BsmFI GGGAC 4 cut(s) 155, 1417, 1906, 2505
BsmI GAATGC 4 cut(s) 540, 1432, 2806, 3819
BsnI GGCC 8 cut(s) 287, 821, 2290, 2992, 3330, 3413, 3516, 3775
Bso31I GGTCTC 3 cut(s) 13, 1650, 2165
Bsp1286I GDGCHC 2 cut(s) 1032, 2940
Bsp19I CCATGG 1 cut(s) 1876
BspACI CCGC 4 cut(s) 775, 910, 1226, 3267
BspANI GGCC 8 cut(s) 287, 821, 2290, 2992, 3330, 3413, 3516, 3775
BspCNI CTCAG 6 cut(s) 253, 424, 1486, 2608, 2904, 3052
BspHI TCATGA 1 cut(s) 2149
BspLI GGNNCC 6 cut(s) 929, 993, 1821, 1922, 2596, 3220
BspMAI CTGCAG 3 cut(s) 976, 2790, 3439
BspMI ACCTGC 3 cut(s) 244, 979, 1622
BspQI GCTCTTC 1 cut(s) 949
BspT107I GGYRCC 1 cut(s) 927
BspTNI GGTCTC 3 cut(s) 13, 1650, 2165
BsrDI GCAATG 4 cut(s) 36, 242, 2903, 3485
BsrI ACTGG 7 cut(s) 162, 1507, 2077, 2202, 2858, 3186, 3192
BssECI CCNNGG 9 cut(s) 289, 1184, 1399, 1400, 1656, 1876, 1966, 1988, 3344
BssNI GRCGYC 2 cut(s) 846, 3297
BssT1I CCWWGG 4 cut(s) 289, 1184, 1876, 1966
Bst2UI CCWGG 7 cut(s) 348, 440, 989, 1401, 2850, 3200, 3346
Bst4CI ACNGT 9 cut(s) 378, 692, 1289, 1564, 1703, 2343, 3153, 3643, 3837
Bst6I CTCTTC 2 cut(s) 949, 2163
BstACI GRCGYC 2 cut(s) 846, 3297
BstAPI GCANNNNNTGC 1 cut(s) 2381
BstC8I GCNNGC 9 cut(s) 1077, 2059, 2358, 2624, 3269, 3328, 3423, 3492, 3605
BstDEI CTNAG 9 cut(s) 261, 432, 1135, 1473, 2292, 2616, 2891, 3039, 3280
BstDSI CCRYGG 1 cut(s) 1876
BstF5I GGATG 7 cut(s) 472, 1871, 1984, 2332, 2531, 3391, 3458
BstH2I RGCGCY 1 cut(s) 3076
BstHHI GCGC 3 cut(s) 520, 1154, 3075
BstMAI GTCTC 4 cut(s) 13, 1650, 1781, 2165
BstMWI GCNNNNNNNGC 5 cut(s) 650, 862, 1475, 2381, 2989
BstNI CCWGG 7 cut(s) 348, 440, 989, 1401, 2850, 3200, 3346
BstNSI RCATGY 1 cut(s) 1794
BstSCI CCNGG 8 cut(s) 346, 438, 987, 1399, 1707, 2848, 3198, 3344
BstSFI CTRYAG 4 cut(s) 972, 2730, 2786, 3435
BstSLI GKGCMC 1 cut(s) 2940
BstV2I GAAGAC 4 cut(s) 849, 1644, 2160, 2846
BstX2I RGATCY 6 cut(s) 271, 580, 1144, 1819, 2782, 3793
BstXI CCANNNNNNTGG 2 cut(s) 2323, 3524
BstYI RGATCY 6 cut(s) 271, 580, 1144, 1819, 2782, 3793
Bsu36I CCTNAGG 1 cut(s) 2292
BsuI GTATCC 2 cut(s) 259, 3206
BsuRI GGCC 8 cut(s) 287, 821, 2290, 2992, 3330, 3413, 3516, 3775
BtgI CCRYGG 1 cut(s) 1876
BtgZI GCGATG 1 cut(s) 923
BtsCI GGATG 7 cut(s) 472, 1871, 1984, 2332, 2531, 3391, 3458
BtsI GCAGTG 2 cut(s) 1872, 2575
BtsIMutI CAGTG 6 cut(s) 1872, 2195, 2211, 2358, 2575, 2718
BveI ACCTGC 3 cut(s) 244, 979, 1622
Cac8I GCNNGC 9 cut(s) 1077, 2059, 2358, 2624, 3269, 3328, 3423, 3492, 3605
CaiI CAGNNNCTG 4 cut(s) 1616, 2357, 2402, 3797
CciI TCATGA 1 cut(s) 2149
CfoI GCGC 3 cut(s) 520, 1154, 3075
Cfr13I GGNCC 8 cut(s) 286, 442, 820, 1920, 2990, 3219, 3514, 3773
CseI GACGC 2 cut(s) 642, 3286
Csp6I GTAC 8 cut(s) 12, 710, 928, 1488, 1982, 2966, 3380, 3430
CviQI GTAC 8 cut(s) 12, 710, 928, 1488, 1982, 2966, 3380, 3430
DdeI CTNAG 9 cut(s) 261, 432, 1135, 1473, 2292, 2616, 2891, 3039, 3280
DraI TTTAAA 1 cut(s) 1246
DraIII CACNNNGTG 2 cut(s) 1550, 1907
DriI GACNNNNNGTC 1 cut(s) 2341
EaeI YGGCCR 1 cut(s) 3411
Eam1104I CTCTTC 2 cut(s) 949, 2163
Eam1105I GACNNNNNGTC 1 cut(s) 2341
EarI CTCTTC 2 cut(s) 949, 2163
Eco130I CCWWGG 4 cut(s) 289, 1184, 1876, 1966
Eco147I AGGCCT 1 cut(s) 2290
Eco31I GGTCTC 3 cut(s) 13, 1650, 2165
Eco32I GATATC 2 cut(s) 1354, 1542
Eco47I GGWCC 3 cut(s) 442, 1920, 3219
Eco57I CTGAAG 7 cut(s) 137, 2070, 2187, 2610, 2982, 2993, 3323
Eco81I CCTNAGG 1 cut(s) 2292
EcoO109I RGGNCCY 2 cut(s) 442, 1920
EcoRI GAATTC 2 cut(s) 1060, 2647
EcoRII CCWGG 7 cut(s) 346, 438, 987, 1399, 2848, 3198, 3344
EcoRV GATATC 2 cut(s) 1354, 1542
EcoT14I CCWWGG 4 cut(s) 289, 1184, 1876, 1966
ErhI CCWWGG 4 cut(s) 289, 1184, 1876, 1966
FaqI GGGAC 4 cut(s) 155, 1417, 1906, 2505
FauI CCCGC 1 cut(s) 3260
FbaI TGATCA 2 cut(s) 225, 747
FokI GGATG 7 cut(s) 479, 1858, 1971, 2339, 2538, 3378, 3445
FspI TGCGCA 1 cut(s) 519
GlaI GCGC 3 cut(s) 519, 1153, 3074
GsuI CTGGAG 1 cut(s) 2258
HaeII RGCGCY 1 cut(s) 3076
HaeIII GGCC 8 cut(s) 287, 821, 2290, 2992, 3330, 3413, 3516, 3775
HapII CCGG 4 cut(s) 1498, 1708, 2717, 3732
HgaI GACGC 2 cut(s) 642, 3286
HhaI GCGC 3 cut(s) 520, 1154, 3075
Hin1I GRCGYC 2 cut(s) 846, 3297
Hin6I GCGC 3 cut(s) 518, 1152, 3073
HinP1I GCGC 3 cut(s) 518, 1152, 3073
HincII GTYRAC 3 cut(s) 1699, 1780, 2233
HindII GTYRAC 3 cut(s) 1699, 1780, 2233
HindIII AAGCTT 1 cut(s) 1206
HpaII CCGG 4 cut(s) 1498, 1708, 2717, 3732
Hpy166II GTNNAC 4 cut(s) 1699, 1780, 2233, 3707
Hpy8I GTNNAC 4 cut(s) 1699, 1780, 2233, 3707
Hpy99I CGWCG 1 cut(s) 2920
HpyCH4III ACNGT 9 cut(s) 378, 692, 1289, 1564, 1703, 2343, 3153, 3643, 3837
HpyCH4IV ACGT 2 cut(s) 359, 846
HpyF10VI GCNNNNNNNGC 5 cut(s) 650, 862, 1475, 2381, 2989
HpyF3I CTNAG 9 cut(s) 261, 432, 1135, 1473, 2292, 2616, 2891, 3039, 3280
HpySE526I ACGT 2 cut(s) 359, 846
Hsp92I GRCGYC 2 cut(s) 846, 3297
HspAI GCGC 3 cut(s) 518, 1152, 3073
KpnI GGTACC 1 cut(s) 931
Ksp22I TGATCA 2 cut(s) 225, 747
LguI GCTCTTC 1 cut(s) 949
LmnI GCTCC 4 cut(s) 244, 959, 2006, 3852
MaeII ACGT 2 cut(s) 359, 846
MfeI CAATTG 1 cut(s) 830
MflI RGATCY 6 cut(s) 271, 580, 1144, 1819, 2782, 3793
MhlI GDGCHC 2 cut(s) 1032, 2940
MlyI GAGTC 6 cut(s) 320, 807, 2150, 2357, 2453, 3881
MroXI GAANNNNTTC 2 cut(s) 2974, 3152
MslI CAYNNNNRTG 3 cut(s) 3522, 3612, 3812
MspA1I CMGCKG 3 cut(s) 147, 1613, 3267
MspI CCGG 4 cut(s) 1498, 1708, 2717, 3732
MspR9I CCNGG 8 cut(s) 348, 440, 989, 1401, 1709, 2850, 3200, 3346
MunI CAATTG 1 cut(s) 830
Mva1269I GAATGC 4 cut(s) 540, 1432, 2806, 3819
MvaI CCWGG 7 cut(s) 348, 440, 989, 1401, 2850, 3200, 3346
MwoI GCNNNNNNNGC 5 cut(s) 650, 862, 1475, 2381, 2989
NciI CCSGG 1 cut(s) 1709
NcoI CCATGG 1 cut(s) 1876
NlaIV GGNNCC 6 cut(s) 929, 993, 1821, 1922, 2596, 3220
NmeAIII GCCGAG 1 cut(s) 1969
NsbI TGCGCA 1 cut(s) 519
NspI RCATGY 1 cut(s) 1794
PagI TCATGA 1 cut(s) 2149
PaqCI CACCTGC 1 cut(s) 979
PasI CCCWGGG 1 cut(s) 1400
PceI AGGCCT 1 cut(s) 2290
PciI ACATGT 1 cut(s) 1790
PciSI GCTCTTC 1 cut(s) 949
PcsI WCGNNNNNNNCGW 1 cut(s) 3125
PctI GAATGC 4 cut(s) 540, 1432, 2806, 3819
PdmI GAANNNNTTC 2 cut(s) 2974, 3152
PfoI TCCNGGA 2 cut(s) 346, 3198
PleI GAGTC 6 cut(s) 319, 806, 2150, 2356, 2452, 3880
PpsI GAGTC 6 cut(s) 319, 806, 2150, 2356, 2452, 3880
PpuMI RGGWCCY 2 cut(s) 442, 1920
PscI ACATGT 1 cut(s) 1790
PshBI ATTAAT 1 cut(s) 2178
Psp5II RGGWCCY 2 cut(s) 442, 1920
Psp6I CCWGG 7 cut(s) 346, 438, 987, 1399, 2848, 3198, 3344
PspGI CCWGG 7 cut(s) 346, 438, 987, 1399, 2848, 3198, 3344
PspN4I GGNNCC 6 cut(s) 929, 993, 1821, 1922, 2596, 3220
PspPI GGNCC 8 cut(s) 286, 442, 820, 1920, 2990, 3219, 3514, 3773
PspPPI RGGWCCY 2 cut(s) 442, 1920
PsrI GAACNNNNNNTAC 2 cut(s) 3070, 3102
PstI CTGCAG 3 cut(s) 976, 2790, 3439
PstNI CAGNNNCTG 4 cut(s) 1616, 2357, 2402, 3797
PsuI RGATCY 6 cut(s) 271, 580, 1144, 1819, 2782, 3793
PvuII CAGCTG 2 cut(s) 147, 1613
RsaI GTAC 8 cut(s) 13, 711, 929, 1489, 1983, 2967, 3381, 3431
RsaNI GTAC 8 cut(s) 12, 710, 928, 1488, 1982, 2966, 3380, 3430
RseI CAYNNNNRTG 3 cut(s) 3522, 3612, 3812
SapI GCTCTTC 1 cut(s) 949
Sau96I GGNCC 8 cut(s) 286, 442, 820, 1920, 2990, 3219, 3514, 3773
SbfI CCTGCAGG 1 cut(s) 976
SchI GAGTC 6 cut(s) 320, 807, 2150, 2357, 2453, 3881
ScrFI CCNGG 8 cut(s) 348, 440, 989, 1401, 1709, 2850, 3200, 3346
SdaI CCTGCAGG 1 cut(s) 976
SduI GDGCHC 2 cut(s) 1032, 2940
SfcI CTRYAG 4 cut(s) 972, 2730, 2786, 3435
SinI GGWCC 3 cut(s) 442, 1920, 3219
SmiMI CAYNNNNRTG 3 cut(s) 3522, 3612, 3812
SmlI CTYRAG 1 cut(s) 3332
SmoI CTYRAG 1 cut(s) 3332
SpeI ACTAGT 2 cut(s) 1679, 1738
Sse8387I CCTGCAGG 1 cut(s) 976
SseBI AGGCCT 1 cut(s) 2290
SsiI CCGC 4 cut(s) 775, 910, 1226, 3267
SspI AATATT 1 cut(s) 2872
StuI AGGCCT 1 cut(s) 2290
StyD4I CCNGG 8 cut(s) 346, 438, 987, 1399, 1707, 2848, 3198, 3344
StyI CCWWGG 4 cut(s) 289, 1184, 1876, 1966
TaaI ACNGT 9 cut(s) 378, 692, 1289, 1564, 1703, 2343, 3153, 3643, 3837
TaiI ACGT 2 cut(s) 362, 849
TaqI TCGA 1 cut(s) 1266
TatI WGTACW 3 cut(s) 11, 1487, 3379
TauI GCSGC 1 cut(s) 778
TscAI CASTG 6 cut(s) 1872, 2202, 2211, 2358, 2575, 2718
TspGWI ACGGA 2 cut(s) 839, 3134
TspRI CASTG 6 cut(s) 1872, 2202, 2211, 2358, 2575, 2718
VpaK11BI GGWCC 3 cut(s) 442, 1920, 3219
VspI ATTAAT 1 cut(s) 2178
XapI RAATTY 8 cut(s) 220, 249, 365, 979, 1060, 2647, 2722, 3260
XbaI TCTAGA 1 cut(s) 2239
XceI RCATGY 1 cut(s) 1794
XmaJI CCTAGG 1 cut(s) 289
XmnI GAANNNNTTC 2 cut(s) 2974, 3152
ZraI GACGTC 1 cut(s) 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.