Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001479

Physical Location & Seq

Genomic Coordinates Reverse (-)

19779978 .. 19782750

Gene Structure 2773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G53350.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGCAGACTCCAAAATCAAGGCCAGGATCATTGGAGCTGCCACAAAAGAAGTCTCCTTTACCAGCTCCCAAAGTTGTTAGGAGACTCAAACCAAGCGGAGCAGAATCCGATCCAAAAACCAAGACAATATCGAAAACTCAAATCCCGAAAGTAGTAGCTGATCGTCGCTCTGCAAGAATCCCTCTCAATGAGATTCAGAAGAAGCGGACGGGAAGGATACCGGAACTGGAATCTACGATATCTCAGCTTCAAGAAGAGCTTAAGAAGGCAAAAGAAGAGCTAAACAGATCAGAAGCATTGAAAAGAGAAGCTCAAGAAGAAGCTGAAGATGCCAAGCATCAGTTAATGGATATCAATGCCTCGGAAGATTCAAGAATTGAGGAGCTGCGTAAACTCTCGCAGGAGCGAGACAAGACATGGCAGTCTGAACTTGAAGCTATGCAGAGACAACACGGAATGGATTCTACCGCTCTGTCTTCTGCCATTAACGAAGTTCAGAAACTGAAATCGAAGCTCTTTGAGTCCGAGTCTGAGTTAGAGCAGTCTAAGTATGAGGTAAGGTCTTTAGAGAAACTCGTCAGACAGCTCGAGGAAGAAAGAGTAAACAGTAGAGACTCTTCATCATCAATGGAAGTGGAAGAGCTGAAAGAAGCAATGAATCTTTCAAGGCAAGAGATAACACAATTGAAATCTGCAGTTGAAGCAGCAGAGACAAGGTATCAAGAAGAGTATATACAGAGCACATTGCAGATAAGAAGCGCATACGAACAAACAGAGGCGGTTAAATCAAGATATTCACAGAGAGAAGCAGAGTTAACGGAAGAATTGAACAGAACCAAAGATGAAATCGAAGGTTTGCGCAAAGAGTTAATGGAGAAGGTGAAAGAAGACGAATCTACGGGCGATTTGAAGAAGCTAGAATCGGATTTGATGGAAGTGAGAGGGAGTTTAATGGATAAAGAGATGGAGTTGCAGATTCTAAGGAGTGCAATGGAGAAGAAAGTGGAAACCGCAAACACGGAAGCCATGGAAGCTGAGCTTAAAAGAGTGAAGATTCAATGTGAGCAATGGAGGAAAGCTGCTGAGACGGCAGCTTCTATACTGAACAATGATGAGGAAAGAACAGATTCTATTGAGACTAGCAAAATGTTGAAGAAGTTTGGTGTGTTACTCAAGAAAAACCATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005874 GO:0005886 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009507 GO:0009536 GO:0009664 GO:0009987 GO:0015630 GO:0016020 GO:0016043 GO:0030865 GO:0031122 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

No domains found.

Protein Analysis

396

Amino Acids

45.68

Weight (kDa)

5.67

Isoelectric Point (pI)

60.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37080 AT2G37080 AT2G37080 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350 AT3G53350
fragaria_vesca	FvH4_6g15372 FvH4_6g15372 FvH4_6g15372 FvH4_6g15372
malus_domestica	MD04G1104300.v1.1 MD12G1124200.v1.1
prunus_persica	Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1 Prupe.6G241200_v2.0.a1
pyrus_communis	pycom04g09910 pycom12g12260
rosa_chinensis	RchiOBHm_Chr2g0099711 RchiOBHm_Chr2g0125251 RchiOBHm_Chr3g0468851
rosa_laevigata	RLG00000024406
rosa_multiflora	Rmu_sc0001639.1_g000019
rosa_roxburghii	Rroxscaffold_4G00315970 Rroxscaffold_6G00412520
rosa_rugosa	Rorug03G0096800 Rorug03G0096900 Rorug06G0151400
rosa_samantha	Rh2BG246400 Rh2CG237000 Rh3AG146600 Rh3AG146700 Rh3BG169100 Rh3BG169200 Rh3DG205900 Rh4AG101700 Rh4CG109700 Rh4DG262400 Rh7BG297800 Rh7DG377800
rosa_wichuraiana	Rw2G026840 Rw3G013790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	421
Acc16I	TGCGCA	1 cut(s)	860
AccBSI	CCGCTC	1 cut(s)	470
AciI	CCGC	5 cut(s)	96, 205, 468, 779, 1011
AclWI	GGATC	2 cut(s)	34, 104
AcuI	CTGAAG	1 cut(s)	345
AflII	CTTAAG	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	22
Alw21I	GWGCWC	1 cut(s)	743
Alw26I	GTCTC	8 cut(s)	57, 76, 402, 439, 606, 704, 1079, 1130
AlwI	GGATC	2 cut(s)	34, 104
AlwNI	CAGNNNCTG	1 cut(s)	502
Ama87I	CYCGRG	1 cut(s)	587
AoxI	GGCC	1 cut(s)	20
ApeKI	GCWGC	5 cut(s)	37, 385, 704, 1079, 1091
Asp700I	GAANNNNTTC	2 cut(s)	460, 1126
AspLEI	GCGC	2 cut(s)	761, 861
AsuHPI	GGTGA	1 cut(s)	892
AvaI	CYCGRG	1 cut(s)	587
BarI	GAAGNNNNNNTAC	4 cut(s)	601, 633, 717, 749
BbsI	GAAGAC	2 cut(s)	468, 894
Bbv12I	GWGCWC	1 cut(s)	743
BbvI	GCAGC	5 cut(s)	24, 372, 716, 1066, 1103
BccI	CCATC	2 cut(s)	925, 958
BceAI	ACGGC	1 cut(s)	1104
BciT130I	CCWGG	1 cut(s)	24
BciVI	GTATCC	1 cut(s)	210
BcoDI	GTCTC	8 cut(s)	57, 76, 402, 439, 606, 704, 1079, 1130
BfaI	CTAG	2 cut(s)	917, 1140
BfmI	CTRYAG	1 cut(s)	693
BfrI	CTTAAG	1 cut(s)	260
BfuI	GTATCC	1 cut(s)	210
BisI	GCNGC	5 cut(s)	38, 386, 705, 1080, 1092
BlpI	GCTNAGC	1 cut(s)	1035
BlsI	GCNGC	5 cut(s)	39, 387, 706, 1081, 1093
Bme1390I	CCNGG	1 cut(s)	24
BmeT110I	CYCGRG	1 cut(s)	587
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	2 cut(s)	319, 346
BpiI	GAAGAC	2 cut(s)	468, 894
Bpu1102I	GCTNAGC	1 cut(s)	1035
BpuEI	CTTGAG	2 cut(s)	297, 1157
BsaJI	CCNNGG	2 cut(s)	360, 1026
BsaWI	WCCGGW	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	231
Bse3DI	GCAATG	4 cut(s)	660, 743, 996, 1073
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	2 cut(s)	360, 1026
BseMI	GCAATG	4 cut(s)	660, 743, 996, 1073
BseMII	CTCAG	4 cut(s)	257, 522, 1026, 1074
BseNI	ACTGG	1 cut(s)	231
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	5 cut(s)	24, 372, 716, 1066, 1103
BshFI	GGCC	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	743
BsiHKCI	CYCGRG	1 cut(s)	587
BsiSI	CCGG	1 cut(s)	221
BsmAI	GTCTC	8 cut(s)	57, 76, 402, 439, 606, 704, 1079, 1130
BsmBI	CGTCTC	1 cut(s)	1079
BsnI	GGCC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	587
Bsp1286I	GDGCHC	1 cut(s)	743
Bsp143I	GATC	4 cut(s)	26, 109, 160, 287
Bsp1720I	GCTNAGC	1 cut(s)	1035
Bsp19I	CCATGG	1 cut(s)	1026
BspACI	CCGC	5 cut(s)	96, 205, 468, 779, 1011
BspANI	GGCC	1 cut(s)	22
BspCNI	CTCAG	4 cut(s)	256, 523, 1027, 1075
BspMAI	CTGCAG	1 cut(s)	697
BspPI	GGATC	2 cut(s)	34, 104
BspQI	GCTCTTC	3 cut(s)	249, 270, 633
BspTI	CTTAAG	1 cut(s)	260
BsrBI	CCGCTC	1 cut(s)	470
BsrDI	GCAATG	4 cut(s)	660, 743, 996, 1073
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	2 cut(s)	360, 1026
BssMI	GATC	4 cut(s)	26, 109, 160, 287
BssT1I	CCWWGG	1 cut(s)	1026
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	608
Bst6I	CTCTTC	5 cut(s)	249, 270, 622, 633, 720
BstAFI	CTTAAG	1 cut(s)	260
BstDEI	CTNAG	6 cut(s)	243, 531, 546, 980, 1035, 1083
BstDSI	CCRYGG	1 cut(s)	1026
BstHHI	GCGC	2 cut(s)	761, 861
BstKTI	GATC	4 cut(s)	29, 112, 163, 290
BstMAI	GTCTC	8 cut(s)	57, 76, 402, 439, 606, 704, 1079, 1130
BstMBI	GATC	4 cut(s)	26, 109, 160, 287
BstMWI	GCNNNNNNNGC	4 cut(s)	329, 701, 1031, 1088
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	1 cut(s)	693
BstV1I	GCAGC	5 cut(s)	24, 372, 716, 1066, 1103
BstV2I	GAAGAC	2 cut(s)	468, 894
BsuI	GTATCC	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	22
BtgI	CCRYGG	1 cut(s)	1026
CaiI	CAGNNNCTG	1 cut(s)	502
CfoI	GCGC	2 cut(s)	761, 861
CspCI	CAANNNNNGTGG	2 cut(s)	615, 650
CviAII	CATG	2 cut(s)	417, 1027
DdeI	CTNAG	6 cut(s)	243, 531, 546, 980, 1035, 1083
DpnI	GATC	4 cut(s)	28, 111, 162, 289
DpnII	GATC	4 cut(s)	26, 109, 160, 287
DrdI	GACNNNNNNGTC	1 cut(s)	421
DseDI	GACNNNNNNGTC	1 cut(s)	421
Eam1104I	CTCTTC	5 cut(s)	249, 270, 622, 633, 720
EarI	CTCTTC	5 cut(s)	249, 270, 622, 633, 720
Eco130I	CCWWGG	1 cut(s)	1026
Eco32I	GATATC	2 cut(s)	240, 352
Eco57I	CTGAAG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	587
EcoRII	CCWGG	1 cut(s)	22
EcoRV	GATATC	2 cut(s)	240, 352
EcoT14I	CCWWGG	1 cut(s)	1026
ErhI	CCWWGG	1 cut(s)	1026
Esp3I	CGTCTC	1 cut(s)	1079
FaeI	CATG	2 cut(s)	420, 1030
FaiI	YATR	9 cut(s)	418, 440, 552, 732, 734, 763, 1028, 1100, 1185
FalI	AAGNNNNNCTT	4 cut(s)	243, 275, 1023, 1055
FatI	CATG	2 cut(s)	416, 1026
Fnu4HI	GCNGC	5 cut(s)	38, 386, 705, 1080, 1092
Fsp4HI	GCNGC	5 cut(s)	38, 386, 705, 1080, 1092
FspBI	CTAG	2 cut(s)	917, 1140
FspI	TGCGCA	1 cut(s)	860
GlaI	GCGC	2 cut(s)	760, 860
GluI	GCNGC	5 cut(s)	38, 386, 705, 1080, 1092
HaeIII	GGCC	1 cut(s)	22
HapII	CCGG	1 cut(s)	221
HhaI	GCGC	2 cut(s)	761, 861
Hin1II	CATG	2 cut(s)	420, 1030
Hin6I	GCGC	2 cut(s)	759, 859
HinP1I	GCGC	2 cut(s)	759, 859
HincII	GTYRAC	1 cut(s)	816
HindII	GTYRAC	1 cut(s)	816
HpaI	GTTAAC	1 cut(s)	816
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	1 cut(s)	892
Hpy166II	GTNNAC	3 cut(s)	392, 604, 816
Hpy188III	TCNNGA	7 cut(s)	145, 251, 314, 372, 722, 789, 1174
Hpy8I	GTNNAC	3 cut(s)	392, 604, 816
Hpy99I	CGWCG	1 cut(s)	168
HpyAV	CCTTC	4 cut(s)	207, 259, 845, 871
HpyCH4III	ACNGT	1 cut(s)	608
HpyCH4V	TGCA	7 cut(s)	4, 173, 442, 695, 748, 973, 989
HpyF10VI	GCNNNNNNNGC	4 cut(s)	329, 701, 1031, 1088
HpyF3I	CTNAG	6 cut(s)	243, 531, 546, 980, 1035, 1083
Hsp92II	CATG	2 cut(s)	420, 1030
HspAI	GCGC	2 cut(s)	759, 859
KspAI	GTTAAC	1 cut(s)	816
Kzo9I	GATC	4 cut(s)	26, 109, 160, 287
LguI	GCTCTTC	3 cut(s)	249, 270, 633
LmnI	GCTCC	5 cut(s)	34, 70, 98, 382, 403
LpnPI	CCDG	6 cut(s)	9, 36, 75, 212, 234, 386
Lsp1109I	GCAGC	5 cut(s)	24, 372, 716, 1066, 1103
LweI	GCATC	2 cut(s)	319, 346
MaeI	CTAG	2 cut(s)	917, 1140
MaeIII	GTNAC	1 cut(s)	1167
MalI	GATC	4 cut(s)	28, 111, 162, 289
MbiI	CCGCTC	1 cut(s)	470
MboI	GATC	4 cut(s)	26, 109, 160, 287
MfeI	CAATTG	1 cut(s)	683
MhlI	GDGCHC	1 cut(s)	743
MluCI	AATT	3 cut(s)	375, 683, 824
MlyI	GAGTC	4 cut(s)	78, 530, 536, 608
MnlI	CCTC	9 cut(s)	192, 370, 373, 547, 583, 769, 935, 1065, 1108
MroXI	GAANNNNTTC	2 cut(s)	460, 1126
MseI	TTAA	8 cut(s)	261, 344, 486, 783, 815, 869, 950, 1041
MspCI	CTTAAG	1 cut(s)	260
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	24
MunI	CAATTG	1 cut(s)	683
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	4 cut(s)	329, 701, 1031, 1088
NcoI	CCATGG	1 cut(s)	1026
NdeII	GATC	4 cut(s)	26, 109, 160, 287
NlaIII	CATG	2 cut(s)	420, 1030
NsbI	TGCGCA	1 cut(s)	860
PaeR7I	CTCGAG	1 cut(s)	587
PciSI	GCTCTTC	3 cut(s)	249, 270, 633
PdmI	GAANNNNTTC	2 cut(s)	460, 1126
PkrI	GCNGC	5 cut(s)	39, 387, 706, 1081, 1093
PleI	GAGTC	4 cut(s)	78, 529, 535, 608
PpsI	GAGTC	4 cut(s)	78, 529, 535, 608
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspXI	VCTCGAGB	1 cut(s)	587
PstI	CTGCAG	1 cut(s)	697
PstNI	CAGNNNCTG	1 cut(s)	502
SapI	GCTCTTC	3 cut(s)	249, 270, 633
SaqAI	TTAA	8 cut(s)	261, 344, 486, 783, 815, 869, 950, 1041
SatI	GCNGC	5 cut(s)	38, 386, 705, 1080, 1092
Sau3AI	GATC	4 cut(s)	26, 109, 160, 287
SchI	GAGTC	4 cut(s)	78, 530, 536, 608
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	743
SfaNI	GCATC	2 cut(s)	319, 346
SfcI	CTRYAG	1 cut(s)	693
Sfr274I	CTCGAG	1 cut(s)	587
SlaI	CTCGAG	1 cut(s)	587
SmlI	CTYRAG	4 cut(s)	260, 312, 587, 1172
SmoI	CTYRAG	4 cut(s)	260, 312, 587, 1172
Sse9I	AATT	3 cut(s)	375, 683, 824
SsiI	CCGC	5 cut(s)	96, 205, 468, 779, 1011
SspMI	CTAG	2 cut(s)	917, 1140
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	1 cut(s)	1026
TaaI	ACNGT	1 cut(s)	608
TaqI	TCGA	4 cut(s)	131, 509, 588, 849
TasI	AATT	3 cut(s)	375, 683, 824
Tru1I	TTAA	8 cut(s)	261, 344, 486, 783, 815, 869, 950, 1041
Tru9I	TTAA	8 cut(s)	261, 344, 486, 783, 815, 869, 950, 1041
TseI	GCWGC	5 cut(s)	37, 385, 704, 1079, 1091
TspDTI	ATGAA	3 cut(s)	609, 671, 858
TspGWI	ACGGA	3 cut(s)	468, 833, 1034
Vha464I	CTTAAG	1 cut(s)	260
XhoI	CTCGAG	1 cut(s)	587
XmnI	GAANNNNTTC	2 cut(s)	460, 1126
XspI	CTAG	2 cut(s)	917, 1140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.